Nucleotide Global Alignment

Description

Query:
TRCN0000478216
Subject:
XM_005245681.2
Aligned Length:
3086
Identities:
1737
Gaps:
1315

Alignment

Query    1  ATGGAGGTCAGAGCTTCATTACAGAAGATAGTTTCTAATGGTGATGAACAATTGGAAAAAGCCATGGAAGAGAT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGAGGTCAGAGCTTCATTACAGAAGATAGTTTCTAATGGTGATGAACAATTGGAAAAAGCCATGGAAGAGAT  74

Query   75  TTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTTGTTGATTGTCAGAGTTCCAGTGAGATTTCAGACCATT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct   75  TTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTTGTTGATTGTCAAAGTTCCAGTGAGATTTCAGACCATT  148

Query  149  CGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCCATCTCTTCAGTTAATTTTGGATCCGTCTAACACAGAA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCCATCTCTTCAGTTAATTTTGGATCCGTCTAACACAGAA  222

Query  223  ATTTCTACACCCAGACCATCTTCTCCAGGTGGACTACCTGAAGAAGATAGTGTTTTATTTAATAAACTGACCTA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATTTCTACACCCAGACCATCTTCTCCAGGTGGACTACCTGAAGAAGATAGTGTTTTATTTAATAAACTGACCTA  296

Query  297  CTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAAGTAGAGGCTTTACGGGCAATGGCAACCATGAAATCTT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAAGTAGAGGCTTTACGGGCAATGGCAACCATGAAATCTT  370

Query  371  CCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACCAAATGTTCCAGAAGGTTCTGTGAGAATTATAGACCAA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACCAAATGTTCCAGAAGGTTCTGTGAGAATTATAGACCAA  444

Query  445  TCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATAAGGTGTTATTCTGTGCACGTGGACATGACGGAACAAC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATAAGGTGTTATTCTGTGCACGTGGACATGACGGAACAAC  518

Query  519  AGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCATGGTTCGGAAGAATTTCAGATACATGTTTTCTCCTGTG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCATGGTTCGGAAGAATTTCAGATACATGTTTTCTCCTGTG  592

Query  593  AAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTTCTGTACAGCATTCAAACGTTCTTCCAGACAAGTGTCT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTTCTGTACAGCATTCAAACGTTCTTCCAGACAAGTGTCT  666

Query  667  GATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTGATGTGTTTACCTTCAGTGTCTCCTTGGAGGTAAAAGA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTGATGTGTTTACCTTCAGTGTCTCCTTGGAGGTAAAAGA  740

Query  741  AGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAGGATAGAGATAAATTTTATTTCAAATTAAAGCAAGGAA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAGGATAGAGATAAATTTTATTTCAAATTAAAGCAAGGAA  814

Query  815  TAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTCTAACAAAGAATTAGCTATTGAAAGATGTTTTGGAATG  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTCTAACAAAGAATTAGCTATTGAAAGATGTTTTGGAATG  888

Query  889  TTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACTGGATATGGAATCCATGGGAAAGAGCTA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACTGGATATGGAATCCATGGGAAAGAGCTA  962

Query  963  TGATGGGAGAGCTTATGTCATCACTGGCATGTGGAACCCCAATGCACCAGTATTTCTGGCACTTAACGAGGAAA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGATGGGAGAGCTTATGTCATCACTGGCATGTGGAACCCCAATGCACCAGTATTTCTGGCACTTAACGAGGAAA  1036

Query 1037  CCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGTGGATATGGTAGTCACAGAGGTGGTGGAGCCTGTTCGC  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGTGGATATGGTAGTCACAGAGGTGGTGGAGCCTGTTCGC  1110

Query 1111  TTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAAATGAGCGATTTTGGTATTTCAGCAGAAAGACTTTCAC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAAATGAGCGATTTTGGTATTTCAGCAGAAAGACTTTCAC  1184

Query 1185  AGAGACCTTCTTCATGAGATTGAAACAGTCTGAGGGAAAAGGCCATACCAATGCTGGAGATGCAATATATGAGG  1258
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGAGACTTTCTTCATGAGATTGAAACAGTCTGAGGGAAAAGGCCATACCAATGCTGGAGATGCAATATATGAGG  1258

Query 1259  TGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCC  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCC  1332

Query 1333  CAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCAAGTGGAACAGGTGATGTGTCTAAGGATTGTCC  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCAAGTGGAACAGGTGATGTGTCTAAGGATTGTCC  1406

Query 1407  TGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGAAAATGGCACAGTAACCTTGGTGCACGACCGAAAGGGC  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGAAAATGGCACAGTAACCTTGGTGCACGACCGAAAGGGC  1480

Query 1481  TGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATTGAGGGCAGAGGTATGGCAGTTATTGGCAGGCTGCCAT  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATTGAGGGCAGAGGTATGGCAGTTATTGGCAGGCTGCCAT  1554

Query 1555  GACAACCAGGCAATGCTGGATAGATACCGAATTCTTATCACAAAG---------CAACAGA-TGAAATTTAGTC  1618
            |||||||||||||||||||||||||||||||||||||||||||||         ||..||| ||    |||   
Sbjct 1555  GACAACCAGGCAATGCTGGATAGATACCGAATTCTTATCACAAAGGACTCAGCCCAGGAGAGTG----TTA---  1621

Query 1619  TTACACCGAGACAGACTATTCA-CCTA--------------------GTTAAATAT------------------  1653
            |||| .|||||     |||||| |.||                    .|||||.||                  
Sbjct 1622  TTAC-TCGAGA-----TATTCATCGTACATTTCCCGCACATGATTACTTTAAAGATACTGGAGGAGATGGTCAA  1689

Query 1654  GAA-GGGTCTATGAAGGTCTCCATGAC--ACCCTGT--------AACCAGCTGCAATTTGACATTAG-------  1709
            ||| .|.||||| |||.|||.||.|.|  ||.||||        ||             ||||||.|       
Sbjct 1690  GAATCGCTCTAT-AAGATCTGCAAGGCCTACTCTGTGTATGATGAA-------------GACATTGGGTACTGT  1749

Query 1710  --------------ACTTGATGTTCTG-ATTACT------TAT---------------ACTTTTTGTTTTAGTT  1747
                          .||||.||  ||| ||||||      |||               |.|.|.||||||.|  
Sbjct 1750  CAAGGGCAGTCTTTTCTTGCTG--CTGTATTACTGCTGCATATGCCAGAGGAACAAGCATTCTGTGTTTTGG--  1819

Query 1748  CCTTTCCTGAGCCTGAAT--TGTACAAATATG------------TCCTAAAACACCAACTT-----------AT  1796
                   |||    .|||  |||||.|.||||            | |||.|..|.||||||           ||
Sbjct 1820  -------TGA----AAATCATGTACGACTATGGTTTGAGAGACCT-CTACAGAAACAACTTCGAAGATCTTCAT  1881

Query 1797  T-----------------AAGAGGCTTAATGCCTGT--------------------------------------  1815
            |                 .||||.| ||||||..|.                                      
Sbjct 1882  TGCAAATTCTACCAGTTGGAGAGAC-TAATGCAGGAACAGCTACCGGACCTGCATAGCCATTTTTCTGATCTGA  1954

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 1955  ACCTGGAAGCTCATATGTATGCATCCCAGTGGTTTCTCACTCTTTTTACTGCCAAGTTCCCACTCTGCATGGTG  2028

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2029  TTCCACATCATTGACTTACTGCTTTGTGAGGGTTTGAACATAATCTTTCATGTAGCTTTGGCTCTCCTAAAGAC  2102

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2103  CTCAAAGGAAGACCTTCTGCAGGCTGATTTTGAAGGTGCTTTAAAGTTCTTTAGAGTTCAGCTTCCAAAGAGAT  2176

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2177  ACAGGGCAGAGGAAAATGCAAGAAGACTGATGGAGCAGGCTTGCAATATTAAAGTACCAACCAAGAAGCTGAAG  2250

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2251  AAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAACAGGAAGACCCAATGGATAGATACAAGAG  2324

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2325  GGAGAACCGAAGATTACAGGAGGCCAGCATGAGGTTGGAACAAGAGAATGATGACCTTGCCCATGAACTAGTAA  2398

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2399  CAAGCAAAATTGCTCTACGGAATGACTTGGATCAGGCAGAAGACAAGGCAGATGTGTTGAATAAAGAGCTCCTT  2472

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2473  TTGACCAAACAGAGGCTGGTGGAGACTGAAGAGGAGAAGAGGAAGCAAGAGGAAGAGACTGCCCAGCTAAAAGA  2546

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2547  AGTCTTCAGGAAACAGCTAGAGAAGGCAGAATATGAAATAAAGAAGACTACAGCTATCATTGCTGAGTATAAAC  2620

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2621  AGATCTGTTCGCAGTTGAGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGGAGGAGCTGGAAGTGGTAAAG  2694

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2695  GGTAAGATGATGGCATGCAAACACTGCAGTGACATTTTCAGCAAGGAGGGTGCTTTGAAACTAGCAGCCACAGG  2768

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2769  CAGAGAGGACCAGGGAATTGAAACAGATGATGAGAAGGACTCACTTAAGAAGCAGCTGAGAGAGATGGAACTGG  2842

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2843  AACTGGCACAAACCAAACTGCAGTTGGTGGAGGCCAAGTGTAAAATTCAGGAACTTGAACATCAGAGAGGAGCC  2916

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2917  CTTATGAATGAAATCCAAGCTGCGAAAAACTCTTGGTTTAGCAAAACCCTGAACTCTATCAAAACGGCCACGGG  2990

Query 1816  ----------------------------------------------------  1815
                                                                
Sbjct 2991  CACCCAGCCATTGCAGCCAGCACCGGTCACCCAGCCACCCAAGGAGAGCACA  3042

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.