Nucleotide Global Alignment

Description

Query:
TRCN0000478280
Subject:
XR_002958278.1
Aligned Length:
2462
Identities:
172
Gaps:
2284

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCCTCCCTGTTTTCAAGAGTCTCACTCTGTCCTTCAGGCTGTGAGTGCAGTCTCCTGATCTTGGCTCACTGCAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTCTGTCTCCTGGGTTCAAGTGATTCTTGTGCCTCAGCCTACCAAGTAGCTGAGATACAGGATTGACTTCTAA  148

Query    1  ------------------------------------------------------------ATGGCTC-TCCTCA  13
                                                                        ||||||| |.||||
Sbjct  149  AGACTCTTGGTACCTGAGGAAGAAACCCAGAAGAGGAAGAGGAAAGCAAAGGAGTCGGGGATGGCTCTTTCTCA  222

Query   14  GGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGA  87
            |||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGA  296

Query   88  GGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGA-------------------  142
            |||||||||||||.|||||||||||||||||||||||||||||||||||||||||                   
Sbjct  297  GGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCTCTTCCAAATGCATG  370

Query  143  --------GTTGT------CAGG-------------GGAGTG-TC----------CATTGACAG----------  168
                    .||||      ||||             |.|||| ||          ||||| |||          
Sbjct  371  ATGAATACATTGTCATCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTG-CAGAGACAAGCAA  443

Query  169  -----CACCT----GC------CTCC------------------------------------------------  179
                 |||.|    ||      ||||                                                
Sbjct  444  GTTATCACATTGGAGCATTTTGCTCCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAA  517

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct  518  GATGAAACAAATGACCATGAAGCACCCATGACAGAAATAAAAAAGTTGACTAGTAGTACAGACCGATATGATCA  591

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct  592  AAGGCATGCTGGAAACAAGCCTATTAAAGGTCAGCTTGAATCAAGATTTCATTTGCATTTGCGAAGACATAGGA  665

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct  666  GAATTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGAGAAAGTTTTCAGTTGCAAATCACATCTTGAA  739

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct  740  ATACATAGGATAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGCGACAAGGCTTTTAAGCATGATTC  813

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct  814  ACACCTGGCAAAACATACTAGAATTCACAGGGGAGACAAACATTACACATGTAATGAATGTGGCAAGGTTTTTG  887

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct  888  ATCAAAAAGCAACCCTTGCATGTCATCATAGAAGTCATACTGGAGAGAAACCTTATAAGTGTAATGAGTGTGGC  961

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct  962  AAGACCTTTAGTCAGACATCACACCTTGTGTACCATCATAGACTGCATACTGGAGAGAAACCTTACAAATGTAA  1035

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1036  TGAGTGTGGCAAGACCTTCGCTCGAAATTCAGTCCTCGTAATTCATAAGGCAGTTCATACTGCAGAGAAACCCT  1109

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1110  ATAAGTGTAATGAATGTGGCAAGGTTTTTAAGCAACGAGCAACTCTTGCAGGACATCGTAGAGTTCACACTGGA  1183

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1184  GAGAAACCTTACAGATGTGAAGAATGCGACAAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAGGAGGAT  1257

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1258  TCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCACGTCTTGCAGAAC  1331

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1332  ATCAGAGAGTTCATACTGGAGAGAGACCTTACACATGTAATGAATGTGGCAAGGTTTTTAGTACAAAAGCGTAC  1405

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1406  CTCGCATGTCATCAAAAACTTCATACTGGAGAGAAACTTTACGAATGTGAAGAATGTGACAAAGTTTACATTCG  1479

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1480  CAAATCACACCTTGAAAGACATAGGAGGATTCATACAGGAGAGAAACCTCACAAGTGTGGTGATTGTGGTAAAG  1553

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1554  CCTTTAATTCACCTTCACACCTTATTAGGCATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATCAG  1627

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1628  TGTGGCAAGGTCTTTAGTCTGAGGTCACTCCTTGCAGAACATCAGAAAATTCCTTTTGGAGACAATTGTTTCAA  1701

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1702  GTGCAATGAGTATAGCAAACCATCAAGCATTAATTGACATCAGAGTCAAATCAGCATTGACCTGAGTTTGAGTT  1775

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1776  GACTTAACATTGATTTCAAGCATTAATCGACATTAAACTGTTTATGTTAAGAGGATTGGGCCAGGCGTGGTGTC  1849

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1850  TCACACCTGTAATCCCAGCACTTTGAGAGGCCAAGACAGATGGAATCTTGCTCTGTCGCCCACGTTGGAGTGCA  1923

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1924  GTGATGTGATCTCGGTTCACTGCAACATTCACCTCCCAGGTTCATGCAATTCTCCTGCCTCAGTCTCCTGAGTA  1997

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 1998  GCTGGGACTACAGGATTGATTTCCAGAGACTTATGTTACTTGAGGAAGACACCAAGAAGGCAAAGAAAAGGAGC  2071

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 2072  CAGGGATGGCTCTTCCTCAGGGATACTTGACTTTCAGAGATGTGGCTATAGAGTTCTCTTTGCTGGAGTGGAAA  2145

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 2146  CGCCTGGACCCTGCACAGAACGCTTTATACAGGGCTGTGATGTGGGAGAACTACAGGAACCTGGAGTCTGTGGG  2219

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 2220  TGAGGAAAATGTTCCTCCAGACATGAAGAATCTGTCCTTGTGTATCTTGGCTTTTCCTGGTTTTGTATTCTCTT  2293

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 2294  TTGTGATTTTGCCCCATACGTGCTTTTGATGTACACAGCTGGGATTCCAGGCACGTGCCACCATGCCCAGCATG  2367

Query  180  --------------------------------------------------------------------------  179
                                                                                      
Sbjct 2368  TTATTTTGTATCTTTAGTGGAGATAGGGTTTTGCCATGTTGGCCAGGCTCGTCTCGAACTCCTGACCTCCATAC  2441

Query  180  --------------------  179
                                
Sbjct 2442  CCACCCGCCTCGGCCTCTAA  2461

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.