Nucleotide Global Alignment

Description

Query:
TRCN0000478315
Subject:
NM_001310127.1
Aligned Length:
2307
Identities:
1553
Gaps:
507

Alignment

Query    1  ATGTTACGTGAGGAAGCCACCAAGAAGAGCAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAGGGACGCTTGAC  74
                                                            |||||||||||||||||.|..|||||
Sbjct    1  ------------------------------------------------ATGGCTCTTCCTCAGGGTCTATTGAC  26

Query   75  TTTCAGGGATGTGGCTATAGAGTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACA  148
            .||||||||||||||.|||||.||||||..|||||||||||||||||||.|||||||.||||||.||.||||||
Sbjct   27  ATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACA  100

Query  149  GGGCTGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGGATAGCTCTTTAAAATCCATGATGGAGTTCTCA  222
            |.|..||||||.|||||||.||.||||||||||..|...||||||.|||||..||||.||||||||||||||||
Sbjct  101  GAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCTCTTCCAAATGCATGATGGAGTTCTCA  174

Query  223  TCAACCAGGCACA-GTATTACAGGAGAAGTGATCCACACAGGGACGTTGCAAAGACATAAAAGTCATCACATTG  295
            |||| .|||.|.| |.|.|||   |||||||||||||||||||||.||||||||||....||||||||||||||
Sbjct  175  TCAA-TAGGGAAAGGCAATAC---AGAAGTGATCCACACAGGGACATTGCAAAGACTGGCAAGTCATCACATTG  244

Query  296  GAGATTTTTGCTTCCCAGAAATGAAGAAAGATATTCATCACTTTGAGTTTCAGTGGCAAGAAGTTGAAAGAAAT  369
            ||||.|.||||||||..|||||..|||||||.||||||.||||||.|||||||||||||||||.|||||.||||
Sbjct  245  GAGAATGTTGCTTCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAAT  318

Query  370  GGCCATGAAGCACCCATGACAAAAATCAAAAAGTTGACTGGTAGTACAGACCGAAGTGATCACAGGCATGCTGG  443
            |||||||||||||||||||||.||||||||.|||||||.|||||||||||||.|..||||||.|||||||||||
Sbjct  319  GGCCATGAAGCACCCATGACAGAAATCAAAGAGTTGACGGGTAGTACAGACCAATATGATCAAAGGCATGCTGG  392

Query  444  AAACAAGCCTATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTGCCTGAACTCCACATGTTTCAGACTA  517
            ||||||||||||||||.||||||||||||.||||||||||||.||||||||||||||.|||||.||||||.|..
Sbjct  393  AAACAAGCCTATTAAATATCAGCTTGGATCAAGCTTTCATTCACATCTGCCTGAACTGCACATATTTCAGCCCG  466

Query  518  AAGGGAAAATTAGTAACCAATTGGACAAGTCTAT---CGGTGCTTCCTCAGCTTCAGAATCCCAAAGAATTTCT  588
            |||||||||||.||||.|||.|.||.||||||||   |..|||||||||||.||||..||||||||||||||||
Sbjct  467  AAGGGAAAATTGGTAATCAACTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTCT  540

Query  589  TGTAGGCTCAAAACTCATATTTCTAATAAGTATGGGAAGAATTTCCTCCATTCTTCAT---TCACACAAATACA  659
            |||||||.||||||.||||||||||||||.||||||||.||||||.||||||||||||   |||||||.|.|||
Sbjct  541  TGTAGGCCCAAAACCCATATTTCTAATAACTATGGGAATAATTTCTTCCATTCTTCATTACTCACACAGAAACA  614

Query  660  GGAAATATGCATGAGAGAAAAACCTTGCCAAAGTAATGAGTGTGGCAAAGCCTTTAATTATAGCTCACTCTTAA  733
            |||..||..||.||.|||||||.|||.||||..|||||||.||||||||.|||||||||.||||||||||||.|
Sbjct  615  GGATGTACACAGGAAAGAAAAATCTTTCCAATTTAATGAGAGTGGCAAATCCTTTAATTGTAGCTCACTCTTTA  688

Query  734  GGAGACACCACATAACCCATTCAAGAGAGAGAGAATATAAATGTGATGTATGTGGC-AAGATCTTTAATCAGAA  806
            ..|.|||.||.||||..|||..|.||||||.|.||||||||||||||||||||||| |||| ||||||||||||
Sbjct  689  AAAAACATCAGATAATTCATCTAGGAGAGAAACAATATAAATGTGATGTATGTGGCAAAGA-CTTTAATCAGAA  761

Query  807  GCAATACATTGTATATCATCATAGATGTCACACTGGTGAGAAAACTTACAAGTGTAATGAGTGTGGGAAGACCT  880
            ||.||||.|||.|.|.||||.||||||||||||||||||||||.||||||.|||||||.|.|||||.|||...|
Sbjct  762  GCGATACCTTGCACACCATCGTAGATGTCACACTGGTGAGAAACCTTACATGTGTAATAAATGTGGCAAGGTTT  835

Query  881  TCACTCAGATGTCATCCCTTGTATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGT  954
            |.|.|.|.|...|||.|||||.|.|.|||..|||||.||||||||||||.||||||||||||||||||||||||
Sbjct  836  TTAATAAAAAAGCATACCTTGCACGTCATTATAGACGTCATACTGGAGAAAAACCTTACAAGTGTAATGAGTGT  909

Query  955  GGCAAGACCTTCAGTGAGAAGTCATCC--CTTAG----------------------------------------  986
            ||||||||.||||||||.||||||.||  |||||                                        
Sbjct  910  GGCAAGACGTTCAGTGACAAGTCAGCCCTCTTAGTTCACAAGACAATTCATACTGGAGAGAAACCTTACAAGTG  983

Query  987  ------------------------------------------ATGCCATCGTAGACTTCATACTG---------  1009
                                                      |.|.||||.||||.|||||||||         
Sbjct  984  TAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAAC  1057

Query 1010  --------------------------------------------------------------------------  1009
                                                                                      
Sbjct 1058  CTTACCAATGTAAAGAATGTGACAAAGTTTTCAGTCGCAAATCATACCTTGAAAGACATAGGAGAATTCACACT  1131

Query 1010  --------------------------------------------------------------------------  1009
                                                                                      
Sbjct 1132  GGTGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACATGATTCACACCTGGCACAGCATATTGT  1205

Query 1010  -----------GAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACTTTTGGTCGAAATTCAGCCCTTGTAA  1072
                       ||||||||||||||||||||||||||||||||||.||.||||||..||||||||||||..||.
Sbjct 1206  AATTCACACTAGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAACGTTTGGTGAAAATTCAGCCCTCTTAG  1279

Query 1073  TTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGAAATCA  1146
            ||||.|||.|||||||||||||||||||||||||||||||||||||.|||||||||...||||.|||..|||||
Sbjct 1280  TTCACAAGACAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTCAATCAACAATCA  1353

Query 1147  TCCCTTCAATGCCATCATATACTTCACACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAATGTTTACAT  1220
            ..||||..|.|.|||||||.||||||.||||||||||||||||||||||||.|||||||||||||.||||.||.
Sbjct 1354  AACCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTAAAGAATGTGACAAAGTTTTCAG  1427

Query 1221  TCGCAGATCACACCTTGAAAGACATAGGAAGATTCATACTGGAGAGGGATCATACAAATGTAAGGTTTGTGACA  1294
            |||||.|||||||||||||||||||||||..|||||.|||||.|||..|.||||||||||||||||||||||||
Sbjct 1428  TCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGTGAGAAACCATACAAATGTAAGGTTTGTGACA  1501

Query 1295  AGGTTTTCCGGAGTGATTCATACCTTGCAGAACA---------TCA-----GAGAG------------------  1336
            |||.||||.|..||||||||.||||.|||.||||         |||     |||||                  
Sbjct 1502  AGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAAT  1575

Query 1337  ----------------------------------------------------TTCATACTGGAGAGAAACCATA  1358
                                                                ||||||||||||||||||..||
Sbjct 1576  GAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACTGGAGAGAAACGTTA  1649

Query 1359  CAAGTGTAATAAATGTGGCAGGAGTTTCAGTCGGAAGTCATCCCTTCAATACCATCATACACTTCACACTGGAG  1432
            ||||||||||.|||||||||..|||||.|.||..||.|||..||||..|||.|||||||.||||||.|||||||
Sbjct 1650  CAAGTGTAATGAATGTGGCAAAAGTTTTAATCACAAATCAAGCCTTGCATATCATCATAGACTTCATACTGGAG  1723

Query 1433  AGAAACCTTACACATGTAATGAATGTGGCAAGGTTTTTAGTCGA---AGAGAAAACCTTGCACGTCATCATAGA  1503
            ||||||||||||..||||||||||||||||||||||||||  ||   ||..|.|| ||||||.|||||||||||
Sbjct 1724  AGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAG--GACACAGTCACAA-CTTGCATGTCATCATAGA  1794

Query 1504  CTTCATGCTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAGATCACACCTTGAAAG  1577
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||.|..||.||||||||||||||.
Sbjct 1795  CTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAATATCAAATCACACCTTGAAAT  1868

Query 1578  ACATAGGAGAATTCATACTGGGGAAAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCAT  1651
            ||||||||||.||||||||||.||.||||||||||||||||.||||||.|||||||||||..||.|||||||||
Sbjct 1869  ACATAGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAGGGTTTGCGACAAGGCTTTTGGGCGTGATTCAT  1942

Query 1652  GCCTTGCAAACCATACGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATAAATGTGCGAAGGTTTTTAAT  1725
                                                                                      
Sbjct 1943  --------------------------------------------------------------------------  1942

Query 1726  CAAAAAGGAATCCTTGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAA  1799
                      .||||||||||||||||||||||||.||||||||||||||.|||||.|||||.|..||||.|||
Sbjct 1943  ----------ACCTTGCACAACATCAGAGAGTTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAA  2006

Query 1800  GGTTT-------TTAATCAAAAAGCAAGCCTTGCAAAACATCAGAGAGTTCATACTGCAGAGAAACCTTACAAG  1866
            ||.||       |||.|||.|       |||.|||.|||||...|||.|||||||||.|||||||||||.||||
Sbjct 2007  GGCTTTCAAGTGTTACTCACA-------CCTGGCACAACATACTAGAATTCATACTGGAGAGAAACCTTTCAAG  2073

Query 1867  TGTAATGAGTGTGGCAAAGCCTTTACTGGACAGTCAACACTTATTCACCATCAAGCAATCCATGGGTGTAGGGA  1940
            ||||.|||||||||||||||||||..||.||||||||||||||||||||||||.||||||||| ||||||||||
Sbjct 2074  TGTAGTGAGTGTGGCAAAGCCTTTCGTGCACAGTCAACACTTATTCACCATCAGGCAATCCAT-GGTGTAGGGA  2146

Query 1941  AACTTTACAAATG  1953
            |||||.||     
Sbjct 2147  AACTTGAC-----  2154

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