Nucleotide Global Alignment

Description

Query:
TRCN0000478540
Subject:
XM_005273629.1
Aligned Length:
2347
Identities:
2179
Gaps:
158

Alignment

Query    1  -------------------------------ATGAATAATATATTGAAACTTAAAAGCTCGGATTCTGAAGGTA  43
                                           |||.| ||.|.|   ||.|.|.|||||||||||||||||||||
Sbjct    1  ATGTTTACTCTTCCAAGTACACTGAGATCAAATGCA-AAGACA---AACCATCAAAGCTCGGATTCTGAAGGTA  70

Query   44  ATTTTGAGACTCCTGAAGCTGAAACCCCGATCCGATCACCTTTCAAGGAGTCCTGTGATCCATCACTCGGATTG  117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   71  ATTTTGAGACTCCTGAAGCTGAAACCCCGATCCGATCACCTTTCAAGGAGTCCTGTGATCCATCACTCGGATTG  144

Query  118  GCAGGACCTGGGGCCAAAAGCCAAGAATCACAAGAAGCTGATGAACAGCTTGTAGCAGAAGTGGTTGAAAAATG  191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  GCAGGACCTGGGGCCAAAAGCCAAGAATCACAAGAAGCTGATGAACAGCTTGTAGCAGAAGTGGTTGAAAAATG  218

Query  192  TTCATCTAAGACTTGTTCTAAACCTTCAGAAAATGAAGTGCCACAGCAGGCCATTGACTCTCACTCAGTCAAGA  265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  219  TTCATCTAAGACTTGTTCTAAACCTTCAGAAAATGAAGTGCCACAGCAGGCCATTGACTCTCACTCAGTCAAGA  292

Query  266  ATTTCAGAGAAGAACCTGAACATGATTTTAGCAAAATTTCCATCGTGAGGCCATTTTCAATAGAAACGAAGGAT  339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  ATTTCAGAGAAGAACCTGAACATGATTTTAGCAAAATTTCCATCGTGAGGCCATTTTCAATAGAAACGAAGGAT  366

Query  340  TCCACGGATATCTCGGCAGTCCTCGGAACAAAAGCAGCTCATGGCTGTGTAACTGCAGTCTCAGGCAAGGCTCT  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  367  TCCACGGATATCTCGGCAGTCCTCGGAACAAAAGCAGCTCATGGCTGTGTAACTGCAGTCTCAGGCAAGGCTCT  440

Query  414  GCCTTCCAGCCCGCCAGACGCCCTCCAGGACGAGGCGATGACGGAAGGCAGCATGGGGGTCACCCTCGAGGCCT  487
            ||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct  441  GCCTTCCAGCCCGCCAGACGCCCTCCAGGACGAGGCGATGACAGAAGGCAGCATGGGGGTCACCCTCGAGGCCT  514

Query  488  CCGCAGAAGCTGATCTAAAAGCTGGCAACTCCTGTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAG  561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  515  CCGCAGAAGCTGATCTAAAAGCTGGCAACTCCTGTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAG  588

Query  562  CCCAAGCCTGTCCCCCTGAGGAAGAAAGCAATTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCAC  635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  589  CCCAAGCCTGTCCCCCTGAGGAAGAAAGCAATTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCAC  662

Query  636  ACCTCTCCCCAAGGCATCCTATCACTTCAGTCCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATG  709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  663  ACCTCTCCCCAAGGCATCCTATCACTTCAGTCCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATG  736

Query  710  CCAGGTTCCAGAAGTCTCCCCCTGACCTTAAAGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGG  783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  737  CCAGGTTCCAGAAGTCTCCCCCTGACCTTAAAGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGG  810

Query  784  GTTGAGCTGGGGGAGGAGTCGAGGAGCTCACCTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACAT  857
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  811  GTTGAGCTGGGGGAGGAGTCGAGGAGCTCACCTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACAT  884

Query  858  AGAGGCCAGGAAAGCCCTTCCAAGGAAGCTTGGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAG  931
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  885  AGAGGCCAGGAAAGCCCTTCCAAGGAAGCTTGGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAG  958

Query  932  ATGGCATCAGTAAGTCAGCAGGTTTAGAACAGCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACA  1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  959  ATGGCATCAGTAAGTCAGCAGGTTTAGAACAGCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACA  1032

Query 1006  TCTTCCAAGCCAGATCCTAGTCAGTGGGAGAGCCCCAGCTTCAACCCCTTTGGGAGCCACTCTGTTCTGCAGAA  1079
            |||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033  TCTTCCAAGCCAGATCCTAGTCAGTGGGAAAGCCCCAGCTTCAACCCCTTTGGGAGCCACTCTGTTCTGCAGAA  1106

Query 1080  CTCCCCACCCCTCTCTTCTGAGGGCTCCTACCACTTTGACCCAGATAACTTTGACGAATCCATGGATCACTTTA  1153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1107  CTCCCCACCCCTCTCTTCTGAGGGCTCCTACCACTTTGACCCAGATAACTTTGACGAATCCATGGATCCCTTTA  1180

Query 1154  AACCAACTACGACCTTAACAAGCAGTGACTTTTGTTCTCCCACTGGTAATCACGTTAATGAAATCTTAGAATCA  1227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181  AACCAACTACGACCTTAACAAGCAGTGACTTTTGTTCTCCCACTGGTAATCACGTTAATGAAATCTTAGAATCA  1254

Query 1228  CCCAAGAAGGCAAAGTCGCGTTTAATAAC------------------------------------GAGTGGCTG  1265
            |||||||||||||||||||||||||||||                                    |||||||||
Sbjct 1255  CCCAAGAAGGCAAAGTCGCGTTTAATAACGACTACTGAACAAGTGAAATTTCTCTGTTTTCTGTTGAGTGGCTG  1328

Query 1266  TAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCTGGATGCATGTTCTCGGGATGAAGGGGCAGTGATCTCCC  1339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329  TAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCTGGATGCATGTTCTCGGGATGAAGGGGCAGTGATCTCCC  1402

Query 1340  AGATTTCAGACATTTCTAATAGGGATGGCCATGCTACTGATGAGGAGAAACTGGCATCCACGTCATGTGGTCAG  1413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403  AGATTTCAGACATTTCTAATAGGGATGGCCATGCTACTGATGAGGAGAAACTGGCATCCACGTCATGTGGTCAG  1476

Query 1414  AAATCAGCTGGTGCCGAGGTGAA---------------------------------------------------  1436
            |||||||||||||||||||||||                                                   
Sbjct 1477  AAATCAGCTGGTGCCGAGGTGAAAGGTGAGCCAGAGGAAGACCTGGAGTACTTTGAATGTTCCAATGTTCCTGT  1550

Query 1437  ------------------------------------AGGCATAGAGAAGGAGACGTGCCAGAAGATGGAAGAAG  1474
                                                ||||||||||||||||||||||||||||||||||||||
Sbjct 1551  GTCTACCATAAATCATGCGTTTTCATCCTCAGAAGCAGGCATAGAGAAGGAGACGTGCCAGAAGATGGAAGAAG  1624

Query 1475  ACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCCTGTGTCGGTGTCCTGTGGAGGTGAG  1548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625  ACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCCTGTGTCGGTGTCCTGTGGAGGTGAG  1698

Query 1549  AGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGCTCACCTTAATAAGAGAAGAGATAAT  1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699  AGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGCTCACCTTAATAAGAGAAGAGATAAT  1772

Query 1623  TACCAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGCAAGAAGTTTTGGAGATGAGGA  1696
            |||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773  TACTAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGCAAGAAGTTTTGGAGATGAGGA  1846

Query 1697  AAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGAACAAAGGACAAGTATGACCTCTCAG  1770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847  AAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGAACAAAGGACAAGTATGACCTCTCAG  1920

Query 1771  AAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACCTTAACTCTGTGGAAAGGTCCCTTTC  1844
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921  AAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACCTTAACTCTGTGGAAAGGTCCCTTTC  1994

Query 1845  TGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTCAAGAAGAATGAAGAAGCCTTGAAGA  1918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995  TGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTCAAGAAGAATGAAGAAGCCTTGAAGA  2068

Query 1919  AATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATACCAGGCCCTGAAAATCCACGCAGAA  1992
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069  AATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATACCAGGCCCTGAAAATCCACGCAGAA  2142

Query 1993  GAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAGCAAAGGCTGAGAGTGCAGCTCTCCA  2066
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143  GAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAGCAAAGGCTGAGAGTGCAGCTCTCCA  2216

Query 2067  TGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCCCTGCAGCAGAAGAACCAAGAAATTG  2140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217  TGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCCCTGCAGCAGAAGAACCAAGAAATTG  2290

Query 2141  AAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGACTGAC  2193
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2291  AAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGACTGAC  2343

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.