Nucleotide Global Alignment

Description

Query:
TRCN0000478540
Subject:
XM_006509146.3
Aligned Length:
2208
Identities:
835
Gaps:
1242

Alignment

Query    1  ATGAATAATATATTGAAACTTAAAAGCTCGGATTCTGAAGGTAATTTTGAGACTCCTGAAGCTGAAACCCCGAT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCGATCACCTTTCAAGGAGTCCTGTGATCCATCACTCGGATTGGCAGGACCTGGGGCCAAAAGCCAAGAATCAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AAGAAGCTGATGAACAGCTTGTAGCAGAAGTGGTTGAAAAATGTTCATCTAAGACTTGTTCTAAACCTTCAGAA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AATGAAGTGCCACAGCAGGCCATTGACTCTCACTCAGTCAAGAATTTCAGAGAAGAACCTGAACATGATTTTAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CAAAATTTCCATCGTGAGGCCATTTTCAATAGAAACGAAGGATTCCACGGATATCTCGGCAGTCCTCGGAACAA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAGCAGCTCATGGCTGTGTAACTGCAGTCTCAGGCAAGGCTCTGCCTTCCAGCCCGCCAGACGCCCTCCAGGAC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GAGGCGATGACGGAAGGCAGCATGGGGGTCACCCTCGAGGCCTCCGCAGAAGCTGATCTAAAAGCTGGCAACTC  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  CTGTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAGCCCAAGCCTGTCCCCCTGAGGAAGAAAGCAA  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCACACCTCTCCCCAAGGCATCCTATCACTTCAGT  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATGCCAGGTTCCAGAAGTCTCCCCCTGACCTTAA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  AGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGGGTTGAGCTGGGGGAGGAGTCGAGGAGCTCAC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  CTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACATAGAGGCCAGGAAAGCCCTTCCAAGGAAGCTT  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  GGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAGATGGCATCAGTAAGTCAGCAGGTTTAGAACA  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  GCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACATCTTCCAAGCCAGATCCTAGTCAGTGGGAGA  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  GCCCCAGCTTCAACCCCTTTGGGAGCCACTCTGTTCTGCAGAACTCCCCACCCCTCTCTTCTGAGGGCTCCTAC  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  CACTTTGACCCAGATAACTTTGACGAATCCATGGATCACTTTAAACCAACTACGACCTTAACAAGCAGTGACTT  1184
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1185  TTGTTCTCCCACTGGTAATCACGTTAATGAA---ATCTTAGAATCACCCAAGAAGG-----CAAAGTCGCGTTT  1250
                                      |||.|   ||.|.||     |..||.||||     ||..||..|    
Sbjct    1  --------------------------ATGGACGGATGTGAG-----CAGAAAAAGGCTTCCCAGTGTGCC----  39

Query 1251  AATAACGAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCTGGATGCATGTTCTCGGGATGAAG  1324
                |.|||.|||||.||.||||||||..|.|||.|||||.||||||...||||.||.|||||.|.||||||||
Sbjct   40  ----AGGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTCGATTTGGACGCGTGTTCCCAGGATGAAG  109

Query 1325  GGGCAGTGATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTACTGATGAGGAGAAACTGGCATCC  1398
            |.||.||||||||..||||.|||||.|||.|.||.|||||.|||||.||.||||||||||||||.|||||.|||
Sbjct  110  GAGCCGTGATCTCGAAGATCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCC  183

Query 1399  A---CGTCATGTGGTCAGAAATCAGCTGGTGCCGAGGTGAAAGGCATAGAGAAGGAGACGTGCCAGAAGATGGA  1469
            |   ||||.||||.||||||.|||||.||.||.|.|||.|||||||||||.||||||||.||||||||||||||
Sbjct  184  ACGTCGTCGTGTGCTCAGAAGTCAGCGGGGGCTGGGGTCAAAGGCATAGAAAAGGAGACATGCCAGAAGATGGA  257

Query 1470  AGAAG----ACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCCTGTGTCGGTGTCCTGT  1539
            ..|||    ||.||    ||||||.|||.|||||||||||||||.||||.||||||||.|||||.|||.|||||
Sbjct  258  GAAAGAGGAACTGG----CTGTGCATGGACTGCTGGAGTCCTCTTCAGAAAAGGCCCCCGTGTCTGTGGCCTGT  327

Query 1540  GGAGGTGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGCTCACCTTAATAAGAGA  1613
            ||.||||||||||||||||||||||||||||||||||||.||||||||||.|||||||||||.||.||.|||||
Sbjct  328  GGGGGTGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAAGCAGACAAGACTGCCGTGCTCACGTTGATCAGAGA  401

Query 1614  AGAGATAATTACCAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGCAAGAAGTTTTGG  1687
            |||||||||.||.||||||||.|||||||||||||||||||||||||||||||||||||||.||||||||.|||
Sbjct  402  AGAGATAATCACTAAAGAGATCGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGGAAGAAGTTCTGG  475

Query 1688  AGATGAGGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGAACAAAGGACAAGTATG  1761
            ||||||||||||||||.||.||||||||||||||.|||||.|||||||||||.||.||.||.||||||||.|||
Sbjct  476  AGATGAGGAAAATTGTGGCAGAATATGAAAAGACCATTGCCCAAATGATTGAGGACGAGCAGAGGACAAGCATG  549

Query 1762  ACCTCTCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACCTTAACTCTGTGGAAAG  1835
            |..|||||||||||.||||||||.|||||||||||||||||.|||||.|||||.|||||.|||||||||||.||
Sbjct  550  AGTTCTCAGAAGAGTTTCCAGCAGCTGACCATGGAGAAGGAGCAGGCGCTGGCGGACCTGAACTCTGTGGAGAG  623

Query 1836  GTCCCTTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTCAAGAAGAATGAAGAAG  1909
            |||||||||||||||||||||||||||.||.|||||||||||.||.||.|||||.|||||||||||||||||||
Sbjct  624  GTCCCTTTCTGATCTCTTCAGGAGATACGAAAACCTGAAAGGCGTGCTAGAAGGATTCAAGAAGAATGAAGAAG  697

Query 1910  CCTTGAAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATACCAGGCCCTGAAAATC  1983
            |||||||.||.|||||||||||.||||||||||||||.||.||.||.|||||||||||||||||||||||..|.
Sbjct  698  CCTTGAAAAAGTGTGCTCAGGACTACTTAGCCAGAGTCAAGCAGGAAGAGCAGCGATACCAGGCCCTGAAGGTT  771

Query 1984  CACGCAGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAGCAAAGGCTGAGAGTGC  2057
            ||||||||.||.||.|||||||.||||||.||.|||||||||||||||||..|.||.||.||||||||||||||
Sbjct  772  CACGCAGAGGAAAAGCTGGACAGAGCCAACGAGGAGATTGCTCAGGTTCGCTCCAAGGCGAAGGCTGAGAGTGC  845

Query 2058  AGCTCTCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCCCTGCAGCAGAAGAACC  2131
            .|||||||||||.||||||||.||.||||||||||||||||||||||||||.|||||.||.|||||||||||.|
Sbjct  846  CGCTCTCCATGCCGGACTCCGGAAGGAGCAGATGAAGGTGGAGTCCCTGGAGAGGGCTCTTCAGCAGAAGAATC  919

Query 2132  AAGAAATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGACTGAC  2193
            ||||.|||||.||.|||||||||||||||||.|||.||||.|||||||||||||||||.|||
Sbjct  920  AAGAGATTGAGGAGCTGACAAAAATCTGTGACGAGTTGATCGCAAAGCTGGGAAAGACCGAC  981

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.