Nucleotide Global Alignment

Description

Query:
TRCN0000478540
Subject:
XM_006509147.3
Aligned Length:
2203
Identities:
839
Gaps:
1244

Alignment

Query    1  ATGAATAATATATTGAAACTTAAAAGCTCGGATTCTGAAGGTAATTTTGAGACTCCTGAAGCTGAAACCCCGAT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCGATCACCTTTCAAGGAGTCCTGTGATCCATCACTCGGATTGGCAGGACCTGGGGCCAAAAGCCAAGAATCAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AAGAAGCTGATGAACAGCTTGTAGCAGAAGTGGTTGAAAAATGTTCATCTAAGACTTGTTCTAAACCTTCAGAA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AATGAAGTGCCACAGCAGGCCATTGACTCTCACTCAGTCAAGAATTTCAGAGAAGAACCTGAACATGATTTTAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CAAAATTTCCATCGTGAGGCCATTTTCAATAGAAACGAAGGATTCCACGGATATCTCGGCAGTCCTCGGAACAA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAGCAGCTCATGGCTGTGTAACTGCAGTCTCAGGCAAGGCTCTGCCTTCCAGCCCGCCAGACGCCCTCCAGGAC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GAGGCGATGACGGAAGGCAGCATGGGGGTCACCCTCGAGGCCTCCGCAGAAGCTGATCTAAAAGCTGGCAACTC  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  CTGTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAGCCCAAGCCTGTCCCCCTGAGGAAGAAAGCAA  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCACACCTCTCCCCAAGGCATCCTATCACTTCAGT  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATGCCAGGTTCCAGAAGTCTCCCCCTGACCTTAA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  AGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGGGTTGAGCTGGGGGAGGAGTCGAGGAGCTCAC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  CTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACATAGAGGCCAGGAAAGCCCTTCCAAGGAAGCTT  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  GGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAGATGGCATCAGTAAGTCAGCAGGTTTAGAACA  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  GCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACATCTTCCAAGCCAGATCCTAGTCAGTGGGAGA  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  GCCCCAGCTTCAACCCCTTTGGGAGCCACTCTGTTCTGCAGAACTCCCCACCCCTCTCTTCTGAGGGCTCCTAC  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  CACTTTGACCCAGATAACTTTGACGAATCCATGGA-TCACTTTAAACCAACTACGACCTTAACAAGCAGTGACT  1183
                                          ||||| ||||                              ||||
Sbjct    1  ------------------------------ATGGAGTCAC------------------------------GACT  14

Query 1184  T--TTGTTCTCCCACTGGTAATCACGTTAATGAAATCTTAGAATCACCCAAGAAGGCAAAGTCGCGTTTAATAA  1255
            |  |||                              |||                 ||||||            
Sbjct   15  TCCTTG------------------------------CTT-----------------CAAAGT------------  29

Query 1256  CGAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCTGGATGCATGTTCTCGGGATGAAGGGGCA  1329
             |||.|||||.||.||||||||..|.|||.|||||.||||||...||||.||.|||||.|.|||||||||.||.
Sbjct   30  -GAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTCGATTTGGACGCGTGTTCCCAGGATGAAGGAGCC  102

Query 1330  GTGATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTACTGATGAGGAGAAACTGGCATCCA---C  1400
            ||||||||..||||.|||||.|||.|.||.|||||.|||||.||.||||||||||||||.|||||.||||   |
Sbjct  103  GTGATCTCGAAGATCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTC  176

Query 1401  GTCATGTGGTCAGAAATCAGCTGGTGCCGAGGTGAAAGGCATAGAGAAGGAGACGTGCCAGAAGATGGAAGAAG  1474
            |||.||||.||||||.|||||.||.||.|.|||.|||||||||||.||||||||.||||||||||||||..|||
Sbjct  177  GTCGTGTGCTCAGAAGTCAGCGGGGGCTGGGGTCAAAGGCATAGAAAAGGAGACATGCCAGAAGATGGAGAAAG  250

Query 1475  ----ACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCCTGTGTCGGTGTCCTGTGGAGG  1544
                ||.||    ||||||.|||.|||||||||||||||.||||.||||||||.|||||.|||.|||||||.||
Sbjct  251  AGGAACTGG----CTGTGCATGGACTGCTGGAGTCCTCTTCAGAAAAGGCCCCCGTGTCTGTGGCCTGTGGGGG  320

Query 1545  TGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGCTCACCTTAATAAGAGAAGAGA  1618
            ||||||||||||||||||||||||||||||||||.||||||||||.|||||||||||.||.||.||||||||||
Sbjct  321  TGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAAGCAGACAAGACTGCCGTGCTCACGTTGATCAGAGAAGAGA  394

Query 1619  TAATTACCAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGCAAGAAGTTTTGGAGATG  1692
            ||||.||.||||||||.|||||||||||||||||||||||||||||||||||||||.||||||||.||||||||
Sbjct  395  TAATCACTAAAGAGATCGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGGAAGAAGTTCTGGAGATG  468

Query 1693  AGGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGAACAAAGGACAAGTATGACCTC  1766
            |||||||||||.||.||||||||||||||.|||||.|||||||||||.||.||.||.||||||||.||||..||
Sbjct  469  AGGAAAATTGTGGCAGAATATGAAAAGACCATTGCCCAAATGATTGAGGACGAGCAGAGGACAAGCATGAGTTC  542

Query 1767  TCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACCTTAACTCTGTGGAAAGGTCCC  1840
            |||||||||.||||||||.|||||||||||||||||.|||||.|||||.|||||.|||||||||||.|||||||
Sbjct  543  TCAGAAGAGTTTCCAGCAGCTGACCATGGAGAAGGAGCAGGCGCTGGCGGACCTGAACTCTGTGGAGAGGTCCC  616

Query 1841  TTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTCAAGAAGAATGAAGAAGCCTTG  1914
            ||||||||||||||||||||||.||.|||||||||||.||.||.|||||.||||||||||||||||||||||||
Sbjct  617  TTTCTGATCTCTTCAGGAGATACGAAAACCTGAAAGGCGTGCTAGAAGGATTCAAGAAGAATGAAGAAGCCTTG  690

Query 1915  AAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATACCAGGCCCTGAAAATCCACGC  1988
            ||.||.|||||||||||.||||||||||||||.||.||.||.|||||||||||||||||||||||..|.|||||
Sbjct  691  AAAAAGTGTGCTCAGGACTACTTAGCCAGAGTCAAGCAGGAAGAGCAGCGATACCAGGCCCTGAAGGTTCACGC  764

Query 1989  AGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAGCAAAGGCTGAGAGTGCAGCTC  2062
            |||.||.||.|||||||.||||||.||.|||||||||||||||||..|.||.||.||||||||||||||.||||
Sbjct  765  AGAGGAAAAGCTGGACAGAGCCAACGAGGAGATTGCTCAGGTTCGCTCCAAGGCGAAGGCTGAGAGTGCCGCTC  838

Query 2063  TCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCCCTGCAGCAGAAGAACCAAGAA  2136
            |||||||.||||||||.||.||||||||||||||||||||||||||.|||||.||.|||||||||||.|||||.
Sbjct  839  TCCATGCCGGACTCCGGAAGGAGCAGATGAAGGTGGAGTCCCTGGAGAGGGCTCTTCAGCAGAAGAATCAAGAG  912

Query 2137  ATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGACTGAC  2193
            |||||.||.|||||||||||||||||.|||.||||.|||||||||||||||||.|||
Sbjct  913  ATTGAGGAGCTGACAAAAATCTGTGACGAGTTGATCGCAAAGCTGGGAAAGACCGAC  969

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