Nucleotide Global Alignment

Description

Query:
TRCN0000478540
Subject:
XM_011544636.2
Aligned Length:
2284
Identities:
996
Gaps:
1274

Alignment

Query    1  ATGAATAATATATTGAAACTTAAAAGCTCGGATTCTGAAGGTAATTTTGAGACTCCTGAAGCTGAAACCCCGAT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCGATCACCTTTCAAGGAGTCCTGTGATCCATCACTCGGATTGGCAGGACCTGGGGCCAAAAGCCAAGAATCAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AAGAAGCTGATGAACAGCTTGTAGCAGAAGTGGTTGAAAAATGTTCATCTAAGACTTGTTCTAAACCTTCAGAA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AATGAAGTGCCACAGCAGGCCATTGACTCTCACTCAGTCAAGAATTTCAGAGAAGAACCTGAACATGATTTTAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CAAAATTTCCATCGTGAGGCCATTTTCAATAGAAACGAAGGATTCCACGGATATCTCGGCAGTCCTCGGAACAA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAGCAGCTCATGGCTGTGTAACTGCAGTCTCAGGCAAGGCTCTGCCTTCCAGCCCGCCAGACGCCCTCCAGGAC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GAGGCGATGACGGAAGGCAGCATGGGGGTCACCCTCGAGGCCTCCGCAGAAGCTGATCTAAAAGCTGGCAACTC  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  CTGTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAGCCCAAGCCTGTCCCCCTGAGGAAGAAAGCAA  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCACACCTCTCCCCAAGGCATCCTATCACTTCAGT  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATGCCAGGTTCCAGAAGTCTCCCCCTGACCTTAA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  AGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGGGTTGAGCTGGGGGAGGAGTCGAGGAGCTCAC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  CTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACATAGAGGCCAGGAAAGCCCTTCCAAGGAAGCTT  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  GGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAGATGGCATCAGTAAGTCAGCAGGTTTAGAACA  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  GCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACATCTTCCAAGCCAGATCCTAGTCAGTGGGAGA  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  GCCCCAGCTTCAACCCCTTTGGGAG----CCACTCTGTTCTGCAGAACTCCCCACCCCTCTCTTCTGAGGGCTC  1106
                              .||||||    |||||||      ||||   ||||             |||||   
Sbjct    1  ------------------ATGGGAGGCTCCCACTCT------CAGA---CCCC-------------GAGGG---  31

Query 1107  CTACCACTTTGACCCAGATAACTTTGACGAATCCATGGATCACTTTAAACCAACTACGACCTTAACAAGCAGTG  1180
                                     |.||       ||         ||||     ||.|....|.|.|||   
Sbjct   32  -------------------------GCCG-------GG---------AACC-----CGCCGGGGAGAGGCA---  56

Query 1181  ACTTTTGTTCTCCCACTGGTAATCACGTTAATGAAATCTTAGAATCACCCAAGAAGGCAAAGTCGCGTTTAATA  1254
                       |||                  ||           .|||||.|.||.|     ||         
Sbjct   57  -----------CCC------------------GA-----------GACCCACGGAGAC-----CG---------  76

Query 1255  ACGAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCTGGATGCATGTTCTCGGGATGAAGGGGC  1328
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   77  -CGAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCTGGATGCATGTTCTCGGGATGAAGGGGC  149

Query 1329  AGTGATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTACTGATGAGGAGAAACTGGCATCCACGT  1402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  AGTGATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTACTGATGAGGAGAAACTGGCATCCACGT  223

Query 1403  CATGTGGTCAGAAATCAGCTGGTGCCGAGGTGAA----------------------------------------  1436
            ||||||||||||||||||||||||||||||||||                                        
Sbjct  224  CATGTGGTCAGAAATCAGCTGGTGCCGAGGTGAAAGGTGAGCCAGAGGAAGACCTGGAGTACTTTGAATGTTCC  297

Query 1437  -----------------------------------------------AGGCATAGAGAAGGAGACGTGCCAGAA  1463
                                                           |||||||||||||||||||||||||||
Sbjct  298  AATGTTCCTGTGTCTACCATAAATCATGCGTTTTCATCCTCAGAAGCAGGCATAGAGAAGGAGACGTGCCAGAA  371

Query 1464  GATGGAAGAAGACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCCTGTGTCGGTGTCCT  1537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  372  GATGGAAGAAGACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCCTGTGTCGGTGTCCT  445

Query 1538  GTGGAGGTGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGCTCACCTTAATAAGA  1611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  446  GTGGAGGTGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGCTCACCTTAATAAGA  519

Query 1612  GAAGAGATAATTACCAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGCAAGAAGTTTT  1685
            ||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  520  GAAGAGATAATTACTAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGCAAGAAGTTTT  593

Query 1686  GGAGATGAGGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGAACAAAGGACAAGTA  1759
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  594  GGAGATGAGGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGAACAAAGGACAAGTA  667

Query 1760  TGACCTCTCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACCTTAACTCTGTGGAA  1833
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  668  TGACCTCTCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACCTTAACTCTGTGGAA  741

Query 1834  AGGTCCCTTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTCAAGAAGAATGAAGA  1907
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  742  AGGTCCCTTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTCAAGAAGAATGAAGA  815

Query 1908  AGCCTTGAAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATACCAGGCCCTGAAAA  1981
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  816  AGCCTTGAAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATACCAGGCCCTGAAAA  889

Query 1982  TCCACGCAGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAGCAAAGGCTGAGAGT  2055
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  890  TCCACGCAGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAGCAAAGGCTGAGAGT  963

Query 2056  GCAGCTCTCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCCCTGCAGCAGAAGAA  2129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  964  GCAGCTCTCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCCCTGCAGCAGAAGAA  1037

Query 2130  CCAAGAAATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGACTGAC  2193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038  CCAAGAAATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGACTGAC  1101

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