Nucleotide Global Alignment

Description

Query:
TRCN0000479053
Subject:
XR_001747261.2
Aligned Length:
4267
Identities:
1901
Gaps:
2363

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCGTTGTCGGCCAGTGCCTTCCGTGAAGTTGCTCGCCGGGTCGTTGGGCCCTGTCGACCTGTAGGCGGGCGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGAGCCAGCGGACAAGACTGCGGGTACAAAACTCAAAACATGAACAACAATATATATTACCAATCTTCAAACCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGTTTGCCTAGAACTGGAATACAGTTGCCTGCGACATATTTTAGAAGAACTAGAAAAGTCAAAGTAATGGATAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGAAAAGAGCCTCCATTCTTCAATGATGATAACATGGGACCATTTTACTACAGACTTCATTTCTGTGATACCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGGAGCTCTTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTCACCTTTTGAAACTGTTATTTCT  370

Query    1  ------------------------------------------------------------------ATGGAACT  8
                                                                              ||||||||
Sbjct  371  GTGAAAGCAAAAATTCGAAGATTGGAAGGTATTCCCATCTGTCGACAACACTTAATTTGGAATAACATGGAACT  444

Query    9  TGAAAATGATTATTGCTTGAATGATTACAACATTTCAGAAGGGTGGACCTTGAAGCTAGTTTTGGCTATGCGTG  82
            |||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct  445  TGAAAATGATTATTGCTTGAATGATTACAACATTTCAGAAGGGTGTACCTTGAAGCTAGTTTTGGCTATGCGTG  518

Query   83  GCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGACGATGGCAGAGTACTTGGATTCCAGT  156
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct  519  GCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGAAGATGGCAGAGTACTTGGATTCCAGT  592

Query  157  CGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGATCAATT  230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGATCAATT  666

Query  231  GAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAATAGATT  304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAATAGATT  740

Query  305  TTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATACAGAT  378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATACAGAT  814

Query  379  GAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAGATGAA  452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAGATGAA  888

Query  453  GCTGCTGAAGGCTAAGATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACC  526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GCTGCTGAAGGCTAAGATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACC  962

Query  527  CACCTGTAGCTCCTCGACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAAC  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CACCTGTAGCTCCTCGACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAAC  1036

Query  601  ATTGGTCAATCTTGTTCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTT  674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ATTGGTCAATCTTGTTCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTT  1110

Query  675  GGCAACTCAACTCTCTGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGG  748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GGCAACTCAACTCTCTGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGG  1184

Query  749  AGAATAACACACTGTCTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAAT  822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGAATAACACACTGTCTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAAT  1258

Query  823  GACCAGGAGCTTGCTGACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAA  896
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GACCAGGAGCTTGCTGACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAA  1332

Query  897  CTTGCCATCTAGTAATGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAG  970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CTTGCCATCTAGTAATGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAG  1406

Query  971  TGGGCTCACTGGCTTCATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTG  1044
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGGGCTCACTGGCTTCATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTG  1480

Query 1045  AATCTGGAGTTGCTACTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGG  1118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AATCTGGAGTTGCTACTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGG  1554

Query 1119  AGTGCTGAATGGGGAATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCT  1192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AGTGCTGAATGGGGAATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCT  1628

Query 1193  TGTCACCTCTTCGCTGTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGT  1266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TGTCACCTCTTCGCTGTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGT  1702

Query 1267  TTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTC  1340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTC  1776

Query 1341  TAGGACTACTTGCTTTCAAGGTGTTAAAGTTGATTCGCTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGG  1414
            ||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1777  TAGGACTACTTGCTTTCAAGGTGTTAAAGTTGATTCACTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGG  1850

Query 1415  CTCGGGATATCACAGAAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTT  1488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CTCGGGATATCACAGAAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTT  1924

Query 1489  GCCTCACTGGCCGGGAGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGG  1562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GCCTCACTGGCCGGGAGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGG  1998

Query 1563  AACTGGGCTGTCTACAAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATA  1636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AACTGGGCTGTCTACAAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATA  2072

Query 1637  CAGGAGTTTTTTTGTCTACCCATGGTGTTGGAATGAATGGAAATAATGCAGCAGCAGGGAAAAGCGTAGGAGAA  1710
            |||||||||||||                                                       ||||||
Sbjct 2073  CAGGAGTTTTTTT-------------------------------------------------------GGAGAA  2091

Query 1711  TGTACTACTCATCACCTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCT  1784
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092  TGTACTACTCATCACCTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCT  2165

Query 1785  TTGTGGAAAGAAAACAGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTT  1858
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2166  TTGTGGAAAGAAAACAGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTT  2239

Query 1859  ATGCAGAAACTCATGGCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTG  1932
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2240  ATGCAGAAACTCATGGCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTG  2313

Query 1933  GTTAATGCACCAAAGCTTCCAAAAATC-----------------------------------------------  1959
            |||||||||||||||||||||||||||                                               
Sbjct 2314  GTTAATGCACCAAAGCTTCCAAAAATCTAACTCTTCCTCTACATCTTACTGTTCTGCCCGGGATTCGTATTATA  2387

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2388  ATGACAGAAGAAATGTTGTTTAGACTATTATTTTTGTTCGACTCTAAAAGATTTGCCAAATAACAAAAGCATAC  2461

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2462  AATGCATACTGTTGGAGAACAAGAATGCTACTGTATTTTACATCTTTATTTCTTGGTGAAACAAAAGTTTTAAA  2535

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2536  AGTAGTTTTAACAACTTTACACTGGAATGATTTAGCTTTGTTATTGCATGTCTTGTGTTAAGTGTTTTGTATAT  2609

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2610  GATATTGCAGTTTTACTAGGCAAATCTTCAAAAGATGCACTTTAGGAAACGAAATATTTCCTAAATAACCAGGC  2683

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2684  TTCCACATTGTACAGAATGAGCAGTCATGTAATGAATGGCTCTACTCAGATTGACCATATGGGTTTTTTCTTTT  2757

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2758  TCTTTCTTTTATTCTTCTCCTTCTTTTTTTTTCAGAGGTGGGATGGGTGGAGATTTTTTAAAAATCCCACGTGT  2831

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2832  GAAAGTTTACTGGCTTTATTAGCAAGTTCCTTTTTACTTCAAGCTACTTTTTATAAAAAAGAACATTTTTCCAG  2905

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2906  TGTGGTTTTTAACAGATAATACATTTCTTCCACATTCAGATTAGTATTCGGACATGAATCCATTCTATAAAACA  2979

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2980  CATCGTGTTCATGATAGTGTATATTTTACTACTTTTTGAATGTTAATTTTAAAATAGAAGATGTCCCACTTGCC  3053

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3054  ATTAAATATAGAAGCCAACTTTTTACCTTTTGAAATATGGCTACATTTAAAACAAAATCTCACAGCTCGGTTTT  3127

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3128  TCTTATTTGTTGAGTGCTATTACCAGGAGAAATTCAAATAAATATTCAATTTCATTATGAATTTCATTATTTAT  3201

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3202  TTATAATAGTTTTTCTTTTATAAATAATTTTTCTTTTATAAAACTATTTAATTAAATGAGTGATTTATTTTACG  3275

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3276  TGGATAAAATAACTATCAGTATAAAAATATTCTTTTAGGATATTAAGGACCCTGTTCCCCAGGTGTAACCAGAA  3349

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3350  ACCACTAAGGCACTTAGTGGCCACTTGCTGTATAGAAGCTCAGTTCAGACTGATGCTGAACCCTGGTAAACAAC  3423

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3424  TAGCACCTAACCCAGGTAGACTCTGCAGCCCTGGGGTAGCAGACTCTGCTAAGAGTACCAGACTCTGCTAAGAG  3497

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3498  TACCAGAAGGCTAACTTAGGAGCTGTGAGGGGCCCCTTCCTCTACTTAAGGCTGAATGAACTGGAGAGCTCACT  3571

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3572  GCCCCTGCTCCTGTAAGAAATGAAATGTTGATGGAGACAGATGCCTTCAGACAAAGAGGGCAGTACATTCATAA  3645

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3646  GAGGGAATGGCTAAAAGTTAGCAGAGGAGCTATGCAAATGGGGGTTGAAGGCATGCTTTTTAAGAAGGGTGGAT  3719

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3720  ATAAGTAGATGAAAAATACTTTCATCTGTGTTATGAATAATTCAGTATTTCCTCCTGTATCAAGAAGACACGTG  3793

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3794  TTTTAGACACTTAAAATATAAGAACTGCCTTACAGAGTTAGACTGCTGAGAAATGGACCATAGCATATTTATTC  3867

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3868  TGCAAACAAATATGAATGCCTAGGGCCTACTTGATGTAGTGTGCTATGCTTTTTAAACCAAGACTATAAGTAGA  3941

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3942  AGTAAGTCTCATTCTAAGTTTTACTAAAGATTGTGGTGAAAGTTAAGTCTTTTTACTAGTTTTCAATAACTGAC  4015

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 4016  AGCTGAACTATTTTAATTCAACAAGTTATATCATTATATTGAGGGGCATTTCTTTATGCTTTAAATTCTTACAC  4089

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 4090  AGACACATTCCAAATTTTAGAGACATTGTATCTGTCTTTGCATTTCCAGTAATTAGCAGAGTAGATTGCCTGTA  4163

Query 1960  -------------------------------------------------  1959
                                                             
Sbjct 4164  GGTACTGGTTAAACATTAGTTGAATAAATTGATGCATTGGACAACTTAA  4212

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