Nucleotide Global Alignment

Description

Query:
TRCN0000479053
Subject:
XR_001747265.1
Aligned Length:
4241
Identities:
1894
Gaps:
2338

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACATCCGGGCCTCGTAACTCACAACCTCCAGCGAATGCCAAGAAGGCCCCAGGGCCCTGGCGCCCCGGCAACCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCACGTCCGGGGGCCAGGCCTGCCCCCGCCCGCGCTGATTGGAGGGCAGCGAAAGCGCCGTCCAGCGATTGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACAAAACTCAAAACATGAACAACAATATATATTACCAATCTTCAAACCTGGTTTGCCTAGAACTGGAATACAGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGCCTGCGACATATTTTAGAAGAACTAGAAAAGTCAAAGTAATGGATAACAGAAAAGAGCCTCCATTCTTCAAT  296

Query    1  -------------------------------------------------------------------------A  1
                                                                                     .
Sbjct  297  GATGATAACATGGGACCATTTTACTACAGACTTCATTTCTGTGATACCATGGAGCTCTTCATTGAAACATTAAC  370

Query    2  TGGAAC--------------------------TTGAAAATGATTATTGCT-TGAATG-----ATTACAA-----  38
            ||||||                          ||||||.|| |||||.|| ||||.|     |||..||     
Sbjct  371  TGGAACATGTTTTGAGCTGAGAGTTTCACCTTTTGAAACTG-TTATTTCTGTGAAAGCAAAAATTCGAAGATTG  443

Query   39  ----CATTTCAGAAGGGTGGACCTTGAAGCTAGTTTTGGCTATGCGTGGCGGACCTATAAATACTAGAAGAGTT  108
                |||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  GAAGCATTTCAGAAGGGTGTACCTTGAAGCTAGTTTTGGCTATGCGTGGCGGACCTATAAATACTAGAAGAGTT  517

Query  109  CCTACAGACGATCCACTTAGGACGATGGCAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGGGAGAAGACCTC  182
            ||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  518  CCTACAGACGATCCACTTAGGAAGATGGCAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGGGAGAAGACCTC  591

Query  183  CTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGATCAATTGAATTTCTTTCCTGCAGTAGATAGGG  256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  592  CTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGATCAATTGAATTTCTTTCCTGCAGTAGATAGGG  665

Query  257  GAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAATAGATTTTCATTTGCATGTCCTACGGAGAAAA  330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  666  GAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAATAGATTTTCATTTGCATGTCCTACGGAGAAAA  739

Query  331  GGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATACAGATGAGGATGAAGAAACTGAGCCTTCTTC  404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  740  GGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATACAGATGAGGATGAAGAAACTGAGCCTTCTTC  813

Query  405  TTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGCTGCTGAAGGCTAAGATGAAGAACA  478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  814  TTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGCTGCTGAAGGCTAAGATGAAGAACA  887

Query  479  TGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCACCTGTAGCTCCTCGACCTTCTAGT  552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888  TGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCACCTGTAGCTCCTCGACCTTCTAGT  961

Query  553  GGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGTTCACCTGCTTT  626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  962  GGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGTTCACCTGCTTT  1035

Query  627  TGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGGCAACTCAACTCTCTGCTGAGAGAT  700
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036  TGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGGCAACTCAACTCTCTGCTGAGAGAT  1109

Query  701  ACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAGAATAACACACTGTCTCACTTCAGT  774
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110  ACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAGAATAACACACTGTCTCACTTCAGT  1183

Query  775  AGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCTGACTCTGTTCT  848
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  AGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCTGACTCTGTTCT  1257

Query  849  CCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACTTGCCATCTAGTAATGGGAACATTG  922
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258  CCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACTTGCCATCTAGTAATGGGAACATTG  1331

Query  923  TCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTGGGCTCACTGGCTTCATTTGCAGAA  996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332  TCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTGGGCTCACTGGCTTCATTTGCAGAA  1405

Query  997  GGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTACTCACTAATGC  1070
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406  GGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTACTCACTAATGC  1479

Query 1071  TGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGAATCAGTAGAGA  1144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480  TGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGAATCAGTAGAGA  1553

Query 1145  CTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTGTCACCTCTTCGCTGTTCTGCACCA  1218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554  CTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTGTCACCTCTTCGCTGTTCTGCACCA  1627

Query 1219  ATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAGCTACAGCCTTC  1292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628  ATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAGCTACAGCCTTC  1701

Query 1293  TTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTAGGACTACTTGCTTTCAAGGTGTTA  1366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702  TTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTAGGACTACTTGCTTTCAAGGTGTTA  1775

Query 1367  AAGTTGATTCGCTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCTCGGGATATCACAGAAATGACTAAC  1440
            ||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776  AAGTTGATTCACTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCTCGGGATATCACAGAAATGACTAAC  1849

Query 1441  AAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGCCTCACTGGCCGGGAGCACAAGCAG  1514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850  AAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGCCTCACTGGCCGGGAGCACAAGCAG  1923

Query 1515  AAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTACAAACCTCCAGC  1588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924  AAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTACAAACCTCCAGC  1997

Query 1589  ATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACAGGAGTTTTTTTGTCTACCCATGGT  1662
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct 1998  ATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACAGGAGTTTTTTT-------------  2058

Query 1663  GTTGGAATGAATGGAAATAATGCAGCAGCAGGGAAAAGCGTAGGAGAATGTACTACTCATCACCTCCCACCTGT  1736
                                                      ||||||||||||||||||||||||||||||||
Sbjct 2059  ------------------------------------------GGAGAATGTACTACTCATCACCTCCCACCTGT  2090

Query 1737  GAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTTGTGGAAAGAAAACAGGACTGGCTA  1810
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091  GAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTTGTGGAAAGAAAACAGGACTGGCTA  2164

Query 1811  GTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTATGCAGAAACTCATGGCTGTACCTAT  1884
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2165  GTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTATGCAGAAACTCATGGCTGTACCTAT  2238

Query 1885  GATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGTTAATGCACCAAAGCTTCCAAAAAT  1958
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2239  GATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGTTAATGCACCAAAGCTTCCAAAAAT  2312

Query 1959  C-------------------------------------------------------------------------  1959
            |                                                                         
Sbjct 2313  CTAACTCTTCCTCTACATCTTACTGTTCTGCCCGGGATTCGTATTATAATGACAGAAGAAATGTTGTTTAGACT  2386

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2387  ATTATTTTTGTTCGACTCTAAAAGATTTGCCAAATAACAAAAGCATACAATGCATACTGTTGGAGAACAAGAAT  2460

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2461  GCTACTGTATTTTACATCTTTATTTCTTGGTGAAACAAAAGTTTTAAAAGTAGTTTTAACAACTTTACACTGGA  2534

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2535  ATGATTTAGCTTTGTTATTGCATGTCTTGTGTTAAGTGTTTTGTATATGATATTGCAGTTTTACTAGGCAAATC  2608

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2609  TTCAAAAGATGCACTTTAGGAAACGAAATATTTCCTAAATAACCAGGCTTCCACATTGTACAGAATGAGCAGTC  2682

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2683  ATGTAATGAATGGCTCTACTCAGATTGACCATATGGGTTTTTTCTTTTTCTTTCTTTTATTCTTCTCCTTCTTT  2756

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2757  TTTTTTCAGAGGTGGGATGGGTGGAGATTTTTTAAAAATCCCACGTGTGAAAGTTTACTGGCTTTATTAGCAAG  2830

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2831  TTCCTTTTTACTTCAAGCTACTTTTTATAAAAAAGAACATTTTTCCAGTGTGGTTTTTAACAGATAATACATTT  2904

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2905  CTTCCACATTCAGATTAGTATTCGGACATGAATCCATTCTATAAAACACATCGTGTTCATGATAGTGTATATTT  2978

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 2979  TACTACTTTTTGAATGTTAATTTTAAAATAGAAGATGTCCCACTTGCCATTAAATATAGAAGCCAACTTTTTAC  3052

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3053  CTTTTGAAATATGGCTACATTTAAAACAAAATCTCACAGCTCGGTTTTTCTTATTTGTTGAGTGCTATTACCAG  3126

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3127  GAGAAATTCAAATAAATATTCAATTTCATTATGAATTTCATTATTTATTTATAATAGTTTTTCTTTTATAAATA  3200

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3201  ATTTTTCTTTTATAAAACTATTTAATTAAATGAGTGATTTATTTTACGTGGATAAAATAACTATCAGTATAAAA  3274

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3275  ATATTCTTTTAGGATATTAAGGACCCTGTTCCCCAGGTGTAACCAGAAACCACTAAGGCACTTAGTGGCCACTT  3348

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3349  GCTGTATAGAAGCTCAGTTCAGACTGATGCTGAACCCTGGTAAACAACTAGCACCTAACCCAGGTAGACTCTGC  3422

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3423  AGCCCTGGGGTAGCAGACTCTGCTAAGAGTACCAGACTCTGCTAAGAGTACCAGAAGGCTAACTTAGGAGCTGT  3496

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3497  GAGGGGCCCCTTCCTCTACTTAAGGCTGAATGAACTGGAGAGCTCACTGCCCCTGCTCCTGTAAGAAATGAAAT  3570

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3571  GTTGATGGAGACAGATGCCTTCAGACAAAGAGGGCAGTACATTCATAAGAGGGAATGGCTAAAAGTTAGCAGAG  3644

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3645  GAGCTATGCAAATGGGGGTTGAAGGCATGCTTTTTAAGAAGGGTGGATATAAGTAGATGAAAAATACTTTCATC  3718

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3719  TGTGTTATGAATAATTCAGTATTTCCTCCTGTATCAAGAAGACACGTGTTTTAGACACTTAAAATATAAGAACT  3792

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3793  GCCTTACAGAGTTAGACTGCTGAGAAATGGACCATAGCATATTTATTCTGCAAACAAATATGAATGCCTAGGGC  3866

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3867  CTACTTGATGTAGTGTGCTATGCTTTTTAAACCAAGACTATAAGTAGAAGTAAGTCTCATTCTAAGTTTTACTA  3940

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 3941  AAGATTGTGGTGAAAGTTAAGTCTTTTTACTAGTTTTCAATAACTGACAGCTGAACTATTTTAATTCAACAAGT  4014

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 4015  TATATCATTATATTGAGGGGCATTTCTTTATGCTTTAAATTCTTACACAGACACATTCCAAATTTTAGAGACAT  4088

Query 1960  --------------------------------------------------------------------------  1959
                                                                                      
Sbjct 4089  TGTATCTGTCTTTGCATTTCCAGTAATTAGCAGAGTAGATTGCCTGTAGGTACTGGTTAAACATTAGTTGAATA  4162

Query 1960  -----------------------  1959
                                   
Sbjct 4163  AATTGATGCATTGGACAACTTAA  4185

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