Nucleotide Global Alignment

Description

Query:
TRCN0000480973
Subject:
XR_001785549.1
Aligned Length:
2497
Identities:
1108
Gaps:
1207

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACGGAAGAGCGAGCACGGGGTGACGTAGCTCAGTTGCAACGTGCTTTAAGTCTGGGTCTGCACTCCGGTCCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTACGGTGTGACACTGACCGCTGTGTTCCGTGTAGTCGAACCTTCTGTGCTTTCGGGAGCGGGACGCGGAGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGGTCCCGTGGGAACTGCTCGGGGCGCGGAGGGAAGAGCGACAGGAGCGCATGACGGCAGGACTGCGCGGCTG  222

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    ||
Sbjct  223  AAAAAGGCTGCTCTCGGGGACTGTGAGCCGGGACGTAGCCCGGCATCCCGTGGAACCCTGTCCGGTCTCGCCAT  296

Query    3  GCTGGGGGTCCGCTGCCTGCTGCGGTCCG-TGCGCTTCTGTTCCTCCGCCCCCTTCCCCAAGCACAAACCTTCA  75
            |||.||||.|||..||||||| |||..|| |||||.||||||||||||...|||.|||||.||.|....|.||.
Sbjct  297  GCTCGGGGCCCGGCGCCTGCT-CGGCGCGCTGCGCCTCTGTTCCTCCGTTTCCTGCCCCAGGCCCCGCGCGTCT  369

Query   76  GCCAAACTGAGCGTGCGGGACGCTCTCGGGGCTCAGAACGCGAGTGGGGAGCGCATTAAGATCCAGGGATGGAT  149
            ||||||.||.|||||||||||||.|||.|||..|||.|||||||.||||||.||.|.|.|.|.|||||||||||
Sbjct  370  GCCAAAATGCGCGTGCGGGACGCCCTCAGGGTCCAGGACGCGAGAGGGGAGTGCGTAACGGTGCAGGGATGGAT  443

Query  150  TCGTTCTGTCCGATCCCAGAAGGAAGTCTTGTTCCTGCATGTAAATGATGGGTCATCTTTGGAAAGCCTTCAGG  223
            .||.||.|||.||||||||||||||||.||||||||||||||||||||.||.||.||||||||||||||||||.
Sbjct  444  CCGGTCCGTCAGATCCCAGAAGGAAGTTTTGTTCCTGCATGTAAATGACGGATCTTCTTTGGAAAGCCTTCAGA  517

Query  224  TTGTTGCAGATTCAGGCCTTGACAGTAGAGAATTAACTTTTGGGAGTTCTGTGGAAGTACAAGGGCAGCTGATA  297
            |||||||.||||||.||.|.||||||||||||||.||||||||||||||||||.||||.||||||||||||.|.
Sbjct  518  TTGTTGCGGATTCAAGCTTCGACAGTAGAGAATTGACTTTTGGGAGTTCTGTGCAAGTCCAAGGGCAGCTGGTC  591

Query  298  AAAAGTCCATCCAAAAGGCAAAATGTGGAACTGAAGGCAGAAAAAATTAAAGTTATTGGAAATTGTGATGCCAA  371
            |||||||..|||||.|||||||||||||||||||||||||||||.|||.|.|||||||||.|.|||||.|||||
Sbjct  592  AAAAGTCAGTCCAAGAGGCAAAATGTGGAACTGAAGGCAGAAAAGATTGAGGTTATTGGAGACTGTGAAGCCAA  665

Query  372  GGATTTCCCCATCAAATATAAAGAGAGGCATCCTCTGGAGTACCTGCGACAATATCCTCACTTTAGGTGTAGGA  445
            ||..|||||.||.||.|||||.|||.|.||.|||||||||||||||.||||.|||||||||.|.|||||.||||
Sbjct  666  GGCATTCCCTATAAAGTATAAGGAGCGACACCCTCTGGAGTACCTGAGACAGTATCCTCACCTGAGGTGCAGGA  739

Query  446  CTAACGTTCTGGGTTCTATATTGAGGATTCGCAGTGAAGCGACAGCTGCTATTCATTCTTTCTTTAAGGACAGT  519
            ||||.|.|||||||||||||||||||.|.|||||||||||.|||||||||||||||||.|.|||||||||||.|
Sbjct  740  CTAATGCTCTGGGTTCTATATTGAGGGTCCGCAGTGAAGCCACAGCTGCTATTCATTCCTACTTTAAGGACAAT  813

Query  520  GGCTTTGTACATATTCATACTCCAATAATCACATCCAATGACTCTGAGGGAGCTGGAGAACTTTTTCAACTTGA  593
            ||||||||.||.||||||||.|||.||.||||||||||.||||.||||||.||.|||||.|||||||||.|.||
Sbjct  814  GGCTTTGTGCACATTCATACCCCAGTACTCACATCCAACGACTGTGAGGGGGCCGGAGAGCTTTTTCAAGTGGA  887

Query  594  ACCTTCAGGCAAACTTAAGGTACCTGAGGAGAATTTCTTCAATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  667
            .||||||.|||||.|.||||.|||..||||||.||||||..|||||||||||||||||||||||||||||||||
Sbjct  888  GCCTTCAAGCAAAATAAAGGGACCCAAGGAGAGTTTCTTTGATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  961

Query  668  TTCATCTAGAAGTGATGTCAGGAGCTTTTACTCAAGTGTTTACCTTTGGTCCGACCTTCCGAGCTGAAAATTCT  741
            ||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||.|||||||||||.||||||
Sbjct  962  TTCACCTAGAAGTGATGTCAGGAGCTTTTACCCAAGTATTTACCTTTGGTCCAACATTCCGAGCTGAGAATTCT  1035

Query  742  CAGAGCCGGAGGCACCTGGCAGAGTTTTATATGATAGAAGCAGAGATTTCTTTTGTTGACAGCCTTCAAGATCT  815
            |||||||||||.||||||||.||.|||||||||.|.|||||.|||||||||||||||||.||||||||.|||||
Sbjct 1036  CAGAGCCGGAGACACCTGGCTGAATTTTATATGGTTGAAGCGGAGATTTCTTTTGTTGAAAGCCTTCAGGATCT  1109

Query  816  TATGCAGGTTATAGAGGAACTGTTCAAGGCTACAACAATGATGGTTCTCTCAAAATGTCCTGAAGATGTTGAAC  889
            .||||||||.||.||||||||.||||||||.||.||...|||||||||||||.|.||||||||||||||||||.
Sbjct 1110  CATGCAGGTCATGGAGGAACTCTTCAAGGCGACCACGGAGATGGTTCTCTCACACTGTCCTGAAGATGTTGAAT  1183

Query  890  TCTGTCACAAATTCATAGCACCTGGCCAAAAGGACAGATTAGAACATATGCTAAAAAACAACTTTTTAATCATT  963
            |.||||||.|.||||||||..|||||||.||||.||||.|||||||||||||||||||||||||..||||||||
Sbjct 1184  TGTGTCACCAGTTCATAGCTGCTGGCCAGAAGGGCAGACTAGAACATATGCTAAAAAACAACTTCCTAATCATT  1257

Query  964  TCTTATACTGAAGCAGTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTACCCCAGAGTGGGGTGCTGA  1037
            ||||||||.||.|||.|.||||||||||||||||||||||||||||||.|||||||.||               
Sbjct 1258  TCTTATACGGAGGCAATTGAGATCTTAAAGCAAGCATCCCAGAACTTCGCCTTTACACC---------------  1316

Query 1038  CCTACGGACTGAACATGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATTATCCAT  1111
                                                                                      
Sbjct 1317  --------------------------------------------------------------------------  1316

Query 1112  TAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACGGTTGCTGCTGTTGATCTTCTG  1185
                                                             ||.||||||||||||.|||||||||
Sbjct 1317  -------------------------------------------------CAAGGTTGCTGCTGTAGATCTTCTG  1341

Query 1186  GTTCCTGGAGTTGGGGAACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCTTAGAGGAGCGCTTAGC  1259
            |||||||||||||||||.|||||||||||..|||||||.||.|||||.|||||..||.|||||.||||..||||
Sbjct 1342  GTTCCTGGAGTTGGGGAGCTCTTTGGAGGTAGCCTCAGGGAGGAACGGTACCACGTCCTAGAGCAGCGACTAGC  1415

Query 1260  CAGATCGGGACTTACAGAAGTCTACCAATG--------------------------------------------  1289
            .|||||.||||||||..|||.||||||.||                                            
Sbjct 1416  AAGATCAGGACTTACGAAAGCCTACCAGTGGTAAGGATGTGGCCTATTCTGAGTCCCTGCAAAGGATTGTTACT  1489

Query 1290  -----------------GTATCTGGACCTTCGTCGA-TTTGGATCTGTGCCACATGGAGGTTTTGGGATGGGAT  1345
                             |||.|||||.||||| |.| ||||||||||||||.||||||||.||.||||||||||
Sbjct 1490  TGTGCTTCCATTCCCCTGTACCTGGATCTTCG-CAAGTTTGGATCTGTGCCCCATGGAGGCTTCGGGATGGGAT  1562

Query 1346  TTGAACGCTACCTGCAGTGCATCTTGGGTGTTGACAATATCAAAGATGTTATCCCTTTCCCAAGGTTTCCTCA-  1418
            |||||||||||.|.|||||||||.|.||.|||||||||||||||||||||||||||||.|||||||||.|||| 
Sbjct 1563  TTGAACGCTACTTACAGTGCATCCTAGGAGTTGACAATATCAAAGATGTTATCCCTTTTCCAAGGTTTACTCAT  1636

Query 1419  TCATGCCTTTTA--------------------------------------------------------------  1430
            ||.||.|||||.                                                              
Sbjct 1637  TCGTGTCTTTTGTAGCTGAAAGACTGTTTAATGGAAAGTGCTCCATCACCTCATCTACACATGAGTATGTGTAG  1710

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1711  AAAAGACTGGGTGTTTGCAGTCTGGAAATGTGGATTTCAGTGCACAATTCTTGTGCTTTGAGATGTACTATATG  1784

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1785  AAAAATAGAAATGGTCTTGATCATCTTAAGTCAAAGGCTTTTCATGGACAGATAAACTCCCCCAAGGAGAAATA  1858

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1859  CTAAGAGCAAGTGGACTTTCAAATCTGTTACCTCAATTAGGACTGGGCATGTTGTCCAGCTAGTGGAGAAGCCG  1932

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1933  GTTCAGGAGAGTAACTTGAGCCCGGATAACATCTCAAGAAAGAGGAAAGGAAGATATGGAAGTGTAGGATCTCA  2006

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2007  GCGTTCCTCAGGGACTCTGACTTGATAGCCATGTCTCACCCTGCTTTGCCTTTCATTGGTAGCTCATTTCCCCT  2080

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2081  TGTTGTTTGTTTTTTAACAACTAGTGACTAAAAATAAGGTGATGTTGACCCTTTTCTTCCTTGCCATTTAAACT  2154

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2155  TACATGACACCAATCTTATTCTCTGTGCTTTACTCAACTTTATAGAAGAAAATATTCCTTTTCAGAGTCTAAAT  2228

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2229  TGACTAATGAAGTGGCTATTCTGAATTGAACCATTCATCATTGGGTGGTGAAAAAAAATCACATTTAATAACTG  2302

Query 1431  -------------------------------------------------------  1430
                                                                   
Sbjct 2303  TTGATCTTTAGTTTTAAAAGTTAAAGAGCTAAAATTAACCATTTAAACTTGTCAA  2357

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