Nucleotide Global Alignment

Description

Query:
TRCN0000480973
Subject:
XR_001785554.1
Aligned Length:
2575
Identities:
1193
Gaps:
1186

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACGGAAGAGCGAGCACGGGGTGACGTAGCTCAGTTGCAACGTGCTTTAAGTCTGGGTCTGCACTCCGGTCCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTACGGTGTGACACTGACCGCTGTGTTCCGTGTAGTCGAACCTTCTGTGCTTTCGGGAGCGGGACGCGGAGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGGTCCCGTGGGAACTGCTCGGGGCGCGGAGGGAAGAGCGACAGGAGCGCATGACGGCAGGACTGCGCGGCTG  222

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    ||
Sbjct  223  AAAAAGGCTGCTCTCGGGGACTGTGAGCCGGGACGTAGCCCGGCATCCCGTGGAACCCTGTCCGGTCTCGCCAT  296

Query    3  GCTGGGGGTCCGCTGCCTGCTGCGGTCCG-TGCGCTTCTGTTCCTCCGCCCCCTTCCCCAAGCACAAACCTTCA  75
            |||.||||.|||..||||||| |||..|| |||||.||||||||||||...|||.|||||.||.|....|.||.
Sbjct  297  GCTCGGGGCCCGGCGCCTGCT-CGGCGCGCTGCGCCTCTGTTCCTCCGTTTCCTGCCCCAGGCCCCGCGCGTCT  369

Query   76  GCCAAACTGAGCGTGCGGGACGCTCTCGGGGCTCAGAACGCGAGTGGGGAGCGCATTAAGATCCAGGGATGGAT  149
            ||||||.||.|||||||||||||.|||.|||..|||.|||||||.||||||.||.|.|.|.|.|||||||||||
Sbjct  370  GCCAAAATGCGCGTGCGGGACGCCCTCAGGGTCCAGGACGCGAGAGGGGAGTGCGTAACGGTGCAGGGATGGAT  443

Query  150  TCGTTCTGTCCGATCCCAGAAGGAAGTCTTGTTCCTGCATGTAAATGATGGGTCATCTTTGGAAAGCCTTCAGG  223
            .||.||.|||.||||||||||||||||.||||||||||||||||||||.||.||.||||||||||||||||||.
Sbjct  444  CCGGTCCGTCAGATCCCAGAAGGAAGTTTTGTTCCTGCATGTAAATGACGGATCTTCTTTGGAAAGCCTTCAGA  517

Query  224  TTGTTGCAGATTCAGGCCTTGACAGTAGAGAATTAACTTTTGGGAGTTCTGTGGAAGTACAAGGGCAGCTGATA  297
            |||||||.||||||.||.|.||||||||||||||.||||||||||||||||||.||||.||||||||||||.|.
Sbjct  518  TTGTTGCGGATTCAAGCTTCGACAGTAGAGAATTGACTTTTGGGAGTTCTGTGCAAGTCCAAGGGCAGCTGGTC  591

Query  298  AAAAGTCCATCCAAAAGGCAAAATGTGGAACTGAAGGCAGAAAAAATTAAAGTTATTGGAAATTGTGATGCCAA  371
            |||||||..|||||.|||||||||||||||||||||||||||||.|||.|.|||||||||.|.|||||.|||||
Sbjct  592  AAAAGTCAGTCCAAGAGGCAAAATGTGGAACTGAAGGCAGAAAAGATTGAGGTTATTGGAGACTGTGAAGCCAA  665

Query  372  GGATTTCCCCATCAAATATAAAGAGAGGCATCCTCTGGAGTACCTGCGACAATATCCTCACTTTAGGTGTAGGA  445
            ||..|||||.||.||.|||||.|||.|.||.|||||||||||||||.||||.|||||||||.|.|||||.||||
Sbjct  666  GGCATTCCCTATAAAGTATAAGGAGCGACACCCTCTGGAGTACCTGAGACAGTATCCTCACCTGAGGTGCAGGA  739

Query  446  CTAACGTTCTGGGTTCTATATTGAGGATTCGCAGTGAAGCGACAGCTGCTATTCATTCTTTCTTTAAGGACAGT  519
            ||||.|.|||||||||||||||||||.|.|||||||||||.|||||||||||||||||.|.|||||||||||.|
Sbjct  740  CTAATGCTCTGGGTTCTATATTGAGGGTCCGCAGTGAAGCCACAGCTGCTATTCATTCCTACTTTAAGGACAAT  813

Query  520  GGCTTTGTACATATTCATACTCCAATAATCACATCCAATGACTCTGAGGGAGCTGGAGAACTTTTTCAACTTGA  593
            ||||||||.||.||||||||.|||.||.||||||||||.||||.||||||.||.|||||.|||||||||.|.||
Sbjct  814  GGCTTTGTGCACATTCATACCCCAGTACTCACATCCAACGACTGTGAGGGGGCCGGAGAGCTTTTTCAAGTGGA  887

Query  594  ACCTTCAGGCAAACTTAAGGTACCTGAGGAGAATTTCTTCAATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  667
            .||||||.|||||.|.||||.|||..||||||.||||||..|||||||||||||||||||||||||||||||||
Sbjct  888  GCCTTCAAGCAAAATAAAGGGACCCAAGGAGAGTTTCTTTGATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  961

Query  668  TTCATCTAGAAGTGATGTCAGGAGCTTTTACTCAAGTGTTTACCTTTGGTCCGACCTTCCGAGCTGAAAATTCT  741
            ||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||.|||||||||||.||||||
Sbjct  962  TTCACCTAGAAGTGATGTCAGGAGCTTTTACCCAAGTATTTACCTTTGGTCCAACATTCCGAGCTGAGAATTCT  1035

Query  742  CAGAGCCGGAGGCACCTGGCAGAGTTTTATATGATAGAAGCAGAGATTTCTTTTGTTGACAGCCTTCAAGATCT  815
            |||||||||||.||||||||.||.|||||||||.|.|||||.|||||||||||||||||.||||||||.|||||
Sbjct 1036  CAGAGCCGGAGACACCTGGCTGAATTTTATATGGTTGAAGCGGAGATTTCTTTTGTTGAAAGCCTTCAGGATCT  1109

Query  816  TATGCAGGTTATAGAGGAACTGTTCAAGGCTACAACAATGATGGTTCTCTCAAAATGTCCTGAAGATGTTGAAC  889
            .||||||||.||.||||||||.||||||||.||.||...|||||||||||||.|.||||||||||||||||||.
Sbjct 1110  CATGCAGGTCATGGAGGAACTCTTCAAGGCGACCACGGAGATGGTTCTCTCACACTGTCCTGAAGATGTTGAAT  1183

Query  890  TCTGTCACAAATTCATAGCACCTGGCCAAAAGGACAGATTAGAACATATGCTAAAAAACAACTTTTTAATCATT  963
            |.||||||.|.||||||||..|||||||.|||                                      ||||
Sbjct 1184  TGTGTCACCAGTTCATAGCTGCTGGCCAGAAG--------------------------------------CATT  1219

Query  964  TCTTATACTGAAGCAGTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTAC-CCCAGAGTGGGGTGCTG  1036
            ||||||||.||.|||.|.||||||||||||||||||||||||||||||.||||||| |||| |||||||||.||
Sbjct 1220  TCTTATACGGAGGCAATTGAGATCTTAAAGCAAGCATCCCAGAACTTCGCCTTTACACCCA-AGTGGGGTGTTG  1292

Query 1037  ACCTACGGACTGAACATGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATTATCCA  1110
            |.||||..||.||||||||.|||||||||||||..|||||||||||||||||.|||||.||.||||||||||||
Sbjct 1293  ATCTACAAACGGAACATGAGAAGTACCTGGTGAGACACTGTGGCAACATACCAGTCTTTGTCATTAATTATCCA  1366

Query 1111  TTAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACGGTTGCTGCTGTTGATCTTCT  1184
            |.|..|||||||||.||||||||||||||.|||||||||||.||||||.|.||.|||||||||||.||||||||
Sbjct 1367  TCAGAACTCAAGCCCTTCTACATGAGGGAGAATGAAGATGGTCCTCAGAATACAGTTGCTGCTGTAGATCTTCT  1440

Query 1185  GGTTCCTGGAGTTGGGGAACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCTTAGAGGAGCGCTTAG  1258
            ||||||||||||||||||.|||||||||||..|||||||.||.|||||.|||||..||.|||||.||||..|||
Sbjct 1441  GGTTCCTGGAGTTGGGGAGCTCTTTGGAGGTAGCCTCAGGGAGGAACGGTACCACGTCCTAGAGCAGCGACTAG  1514

Query 1259  CCAGATCGGGACTTACAGAAGTCTACCAATG-------------------------------------------  1289
            |.|||||.||||||||..|||.||||||.||                                           
Sbjct 1515  CAAGATCAGGACTTACGAAAGCCTACCAGTGGTAAGGATGTGGCCTATTCTGAGTCCCTGCAAAGGATTGTTAC  1588

Query 1290  ------------------GTATCTGGACCTTCGTCGA-TTTGGATCTGTGCCACATGGAGGTTTTGGGATGGGA  1344
                              |||.|||||.||||| |.| ||||||||||||||.||||||||.||.|||||||||
Sbjct 1589  TTGTGCTTCCATTCCCCTGTACCTGGATCTTCG-CAAGTTTGGATCTGTGCCCCATGGAGGCTTCGGGATGGGA  1661

Query 1345  TTTGAACGCTACCTGCAGTGCATCTTGGGTGTTGACAATATCAAAGATGTTATCCCTTTCCCAAGGTTTCCTCA  1418
            ||||||||||||.|.|||||||||.|.||.|||||||||||||||||||||||||||||.|||||||||.||||
Sbjct 1662  TTTGAACGCTACTTACAGTGCATCCTAGGAGTTGACAATATCAAAGATGTTATCCCTTTTCCAAGGTTTACTCA  1735

Query 1419  -TCATGCCTTTTA-------------------------------------------------------------  1430
             ||.||.|||||.                                                             
Sbjct 1736  TTCGTGTCTTTTGTAGCTGAAAGACTGTTTAATGGAAAGTGCTCCATCACCTCATCTACACATGAGTATGTGTA  1809

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1810  GAAAAGACTGGGTGTTTGCAGTCTGGAAATGTGGATTTCAGTGCACAATTCTTGTGCTTTGAGATGTACTATAT  1883

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1884  GAAAAATAGAAATGGTCTTGATCATCTTAAGTCAAAGGCTTTTCATGGACAGATAAACTCCCCCAAGGAGAAAT  1957

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1958  ACTAAGAGCAAGTGGACTTTCAAATCTGTTACCTCAATTAGGACTGGGCATGTTGTCCAGCTAGTGGAGAAGCC  2031

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2032  GGTTCAGGAGAGTAACTTGAGCCCGGATAACATCTCAAGAAAGAGGAAAGGAAGATATGGAAGTGTAGGATCTC  2105

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2106  AGCGTTCCTCAGGGACTCTGACTTGATAGCCATGTCTCACCCTGCTTTGCCTTTCATTGGTAGCTCATTTCCCC  2179

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2180  TTGTTGTTTGTTTTTTAACAACTAGTGACTAAAAATAAGGTGATGTTGACCCTTTTCTTCCTTGCCATTTAAAC  2253

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2254  TTACATGACACCAATCTTATTCTCTGTGCTTTACTCAACTTTATAGAAGAAAATATTCCTTTTCAGAGTCTAAA  2327

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2328  TTGACTAATGAAGTGGCTATTCTGAATTGAACCATTCATCATTGGGTGGTGAAAAAAAATCACATTTAATAACT  2401

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2402  GTTGATCTTTAGTTTTAAAAGTTAAAGAGCTAAAATTAACCATTTAAACTTGTCAATCATTGTTCTAGTTCATT  2475

Query 1431  -----------------------------------------------------------  1430
                                                                       
Sbjct 2476  TATATTAGATGTTTGTAAATATTCTAATAGTCATTAAAATTCTTTTAAGTTAAAACCTA  2534

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