Nucleotide Global Alignment

Description

Query:
TRCN0000481037
Subject:
XM_011518883.3
Aligned Length:
3274
Identities:
1581
Gaps:
1673

Alignment

Query    1  -----ATGGGCTCCAG----------------GATCAA------------------------GCAGAATCCAGA  29
                 |||.|||.|||                |.|.||                        ||||||||||||
Sbjct    1  ATGAGATGCGCTGCAGCAGCCTTGAGACATCTGCTGAATGAAACTAGAAAAGTTTGCTTATGGCAGAATCCAGA  74

Query   30  GACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAGA  103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAGA  148

Query  104  GGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTG  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTG  222

Query  178  GACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATT  251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATT  296

Query  252  CGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTAT  325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTAT  370

Query  326  TTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAA  399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAA  444

Query  400  ACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCATCTCAGCGTGCATTCTTATTTTACTGTGCC  473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCATCTCAGCGTGCATTCTTATTTTACTGTGCC  518

Query  474  TGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAATCTGACAGAATATTTTGTGGCTGTGGATGTTAACA  547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAATCTGACAGAATATTTTGTGGCTGTGGATGTTAACA  592

Query  548  ACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACTCTG  621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACTCTG  666

Query  622  ACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTACTGGCAGCACGTGTACATCCCCGTGCTGCC  695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTACTGGCAGCACGTGTACATCCCCGTGCTGCC  740

Query  696  GCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAGAAAG  769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAGAAAG  814

Query  770  TCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACACCAACACCCTGGAAACCCCCTTCGATGAC  843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACACCAACACCCTGGAAACCCCCTTCGATGAC  888

Query  844  CTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAGAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGA  917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAGAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGA  962

Query  918  TGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGC  991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGC  1036

Query  992  CGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTG  1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTG  1110

Query 1066  CAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATTGATGGTCGATTAGATCTTCTCAATTCCGGCGAAGG  1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATTGATGGTCGATTAGATCTTCTCAATTCCGGCGAAGG  1184

Query 1140  TTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGAGTACGCTGGCAGTGACAAACTGTACCATCAGTGGC  1213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGAGTACGCTGGCAGTGACAAACTGTACCATCAGTGGC  1258

Query 1214  TCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACT  1287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACT  1332

Query 1288  GTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAGGACAT  1361
            ||||||||||||                                                         |||||
Sbjct 1333  GTCTACAAGTTC---------------------------------------------------------GACAT  1349

Query 1362  TGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCTGCCAAAGACTGCACCGTCCCCACTGGTGGAGGCCA  1435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350  TGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCTGCCAAAGACTGCACCGTCCCCACTGGTGGAGGCCA  1423

Query 1436  AGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAGTCCACTTTGGACAG---------------------  1488
            |||||||||||||||||||||||||||||||||||||||||||||||||||||                     
Sbjct 1424  AGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAGTCCACTTTGGACAGCTGCAGAGACTGCGTCCCACC  1497

Query 1489  ---------------------------------GTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAG  1529
                                             |||||||||||||||||||||||||||||||||||||||||
Sbjct 1498  CGACCGCCTCCCAAGATACAGCGCTCGAGGCCCGTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAG  1571

Query 1530  CAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAGCCCTGAGCA------AAACACCATTGCAACACCA-  1596
            ||||||||||||||||||||||||||||||||||||||||||||||||      ||| .||.||||.||||.| 
Sbjct 1572  CAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAGCCCTGAGCACCTGGTAAA-GCCCTTGCGACACTAT  1644

Query 1597  GC-----TACACTCC----ACATCCTACAGA-----AAAGCATTACCCATTTTGCGGCCA-AGTTCCCGA----  1651
            ||     |.|.||||    || |||| |.||     ||.|      |||    ||||..| ||..|||||    
Sbjct 1645  GCGGTCTTCCTCTCCGAAGAC-TCCT-CTGATGATGAATG------CCA----GCGGGAAGAGGGCCCGAGCTC  1706

Query 1652  ---------CGAGAGGCTGGACCTCTTCATCAC------------AT---------------------------  1677
                     ||||||      |.|.|||.||.|            ||                           
Sbjct 1707  TGGCTTCACCGAGAG------CTTTTTCTTCTCCGCTCCCTTTGAATGGCCGCAGCCGTATCGGACACTCAGGG  1774

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1775  AGTCAGACAGCGCGGAAGGCGACGAGGCAGAGAGTCCAGAGCAGCAAGTGCGGAAGTCCACAGGCCCTGTCCCA  1848

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1849  GCTCCCCCTGACCGGGCTGCCAGCATCGACCTTCTGGAAGACGTCTTCAGCAACCTGGACATGGAGGCCGCACT  1922

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1923  GCAGCCACTGGGCCAGGCCAAGAGCTTAGAGGACCTTCGTGCCCCCAAAGACCTGAGGGAGCAGCCAGGGACCT  1996

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1997  TTGACTATCAGAGGCTGGATCTGGGCGGGAGTGAGAGGAGCCGCGGGGTGACAGTGGCCTTGAAGCTTACCCAC  2070

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2071  CCGTACAACAAGCTCTGGAGCCTGGGCCAGGACGACATGGCCATCCCCAGCAAGCCCCCAGCTGCCTCCCCTGA  2144

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2145  GAAGCCCTCAGCCCTGCTCGGAAACTCCCTGGCCCTGCCTCGAAGGCCCCAGAACCGGGACAGCATCCTGAACC  2218

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2219  CCAGTGACAAGGAGGAGGTGCCCACCCCTACTCTGGGCAGCATCACCATCCCCCGGCCCCAAGGCAGGAAGACC  2292

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2293  CCAGAGCTGGGCATCGTGCCTCCACCGCCCATTCCCCGCCCGGCCAAGCTCCAGGCTGCCGGCGCCGCACTTGG  2366

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2367  TGACGTCTCAGAGCGGCTGCAGACGGATCGGGACAGGCGAGCTGCCCTGAGTCCAGGGCTCCTGCCTGGTGTTG  2440

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2441  TCCCCCAAGGCCCCACTGAACTGCTCCAGCCGCTCAGCCCTGGCCCCGGGGCTGCAGGCACGAGCAGTGACGCC  2514

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2515  CTGCTCGCCCTCCTGGACCCGCTCAGCACAGCCTGGTCAGGCAGCACCCTCCCGTCACGCCCCGCCACCCCGAA  2588

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2589  TGTAGCCACCCCATTCACCCCCCAATTCAGCTTCCCCCCTGCAGGGACACCCACCCCATTCCCACAGCCACCAC  2662

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2663  TCAACCCCTTTGTCCCATCCATGCCAGCAGCCCCACCCACCCTGCCCCTGGTCTCCACACCAGCCGGGCCTTTC  2736

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2737  GGGGCCCCTCCAGCTTCCCTGGGGCCGGCTTTTGCGTCCGGCCTCCTGCTGTCCAGTGCTGGCTTCTGTGCCCC  2810

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2811  TCACAGGTCTCAGCCCAACCTCTCCGCCCTCTCCATGCCCAACCTCTTTGGCCAGATGCCCATGGGCACCCACA  2884

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2885  CGAGCCCCCTACAGCCGCTGGGTCCCCCAGCAGTTGCCCCGTCGAGGATCCGAACGTTGCCCCTGGCCCGCTCA  2958

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2959  AGTGCCAGGGCTGCTGAGACCAAGCAGGGGCTGGCCCTGAGGCCTGGAGACCCCCCGCTTCTGCCTCCCAGGCC  3032

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3033  CCCTCAAGGCCTGGAGCCAACACTGCAGCCCTCTGCTCCTCAACAGGCCAGAGACCCCTTTGAGGATTTGTTAC  3106

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3107  AGAAAACCAAGCAAGACGTGAGCCCGAGTCCGGCCCTGGCCCCGGCCCCAGACTCGGTGGAGCAGCTCAGGAAG  3180

Query 1678  ------------------  1677
                              
Sbjct 3181  CAGTGGGAGACCTTCGAG  3198

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