Nucleotide Global Alignment

Description

Query:
TRCN0000481100
Subject:
NM_005815.5
Aligned Length:
2031
Identities:
1220
Gaps:
621

Alignment

Query    1  ATGGACGCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGGAATGGGCTTTGCTGGGTCCATCACA  74
            ||||.|.|||||||.||.|||||||||||||||||||||||||..||.||.|||||||||||||||||.|..||
Sbjct    1  ATGGCCTCAGTGGCTTTAGAGGATGTGGCTGTGAACTTCACCCGAGAAGAGTGGGCTTTGCTGGGTCCTTGTCA  74

Query   75  GAAGAATTTATACAGATATGTGATGCAAGAAACCATCAGGAACCTGGACTGTATAAGAATGATATGGGAAGAAC  148
            |||||||.|.||||.|.||||||||||.||||||||||||||||||||.|||.||..|||||.||||.||||.|
Sbjct   75  GAAGAATCTCTACAAAGATGTGATGCAGGAAACCATCAGGAACCTGGATTGTGTAGTAATGAAATGGAAAGACC  148

Query  149  AGAATACTGAAGATCAGTACAAAAATCCTAGGAGAAATCTAAGATGTCATATGGTAGAGAGATTCAGTGAAAGT  222
            ||||.|.|||||||||.||.|.|.||||.||||.||||||||||||||.||||.||||||||||...|||||||
Sbjct  149  AGAACATTGAAGATCAATATAGATATCCCAGGAAAAATCTAAGATGTCGTATGTTAGAGAGATTTGTTGAAAGT  222

Query  223  AAAGACAGTAGTCAGTGTGGAGAAACATTTAGCCTCATTCGAGATAGTATTGTGAACAACAGCATTTGTCCTGG  296
            |||||..|.|.|||.|||||||||||||.|||||..||||.||||||||||||||.|||.|.||.|..||||||
Sbjct  223  AAAGATGGAACTCAATGTGGAGAAACATCTAGCCAGATTCAAGATAGTATTGTGACCAAGAACACTCTTCCTGG  296

Query  297  AGAAGATCCATGTCAAAGCGCTGAGT-------GTGAAGAAGTCATAATGGGTCATTTATCCCTTAATAGCCAC  363
            ||.||.|||.|||.|||||    |||       |.|||.|||||   ||||||||||.||||||||||.|..||
Sbjct  297  AGTAGGTCCTTGTGAAAGC----AGTATGAGAGGAGAAAAAGTC---ATGGGTCATTCATCCCTTAATTGTTAC  363

Query  364  ATCAGAGTTGATTCTGGACACAAACCACATGAGTATCAGGAATATGGAGAGAAGCCACATACACATAAACAACG  437
            ||||||||||.|.||||.||||||||||||||||||||.||||.|||||||||||||.||||.|||||||||||
Sbjct  364  ATCAGAGTTGGTGCTGGGCACAAACCACATGAGTATCATGAATGTGGAGAGAAGCCAGATACGCATAAACAACG  437

Query  438  TGGGAAAGCCTTCAGTTACCATCACTCCTTTCAGTCGCGTGGAAGGCCTCACACTGGAAAGAAACGCTATGAGT  511
            |||||||||||||||||||||..||||.|||||..|.|.||..||||.|||||||||||||||||..|||||.|
Sbjct  438  TGGGAAAGCCTTCAGTTACCACAACTCATTTCAAACACATGAGAGGCTTCACACTGGAAAGAAACCATATGATT  511

Query  512  GTAAGGAATGTGGAAAAACCTTCAGTTCTCGTAGAAACCTTCGAAGACACATGGTAGTGCAAGGTGGAAATAGA  585
            ||||.||||||||.||..|||||||||||....|||||||||.|||||||||||.||||||..|||||.||.||
Sbjct  512  GTAAAGAATGTGGGAAGTCCTTCAGTTCTTTGGGAAACCTTCAAAGACACATGGCAGTGCAGCGTGGAGATGGA  585

Query  586  CCTTATAAATGTAAGTTGTGTGGGAAAGCTTTTTTTTGGCCCAGTTTATTACGTATGCATGAAAGAACTCACAC  659
            |||||||||||||||||||||||||||||.||||||||||||||||||||||.|||||||||||||||.|||||
Sbjct  586  CCTTATAAATGTAAGTTGTGTGGGAAAGCGTTTTTTTGGCCCAGTTTATTACATATGCATGAAAGAACGCACAC  659

Query  660  TGGAGAGAAACCGTATGAATGTAAGCAGTGTTCTAAAGCCTTTCCTTTTTACAGTTCCTATCGAAGACATGAGA  733
            ||||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||||.|||||||||.|
Sbjct  660  TGGAGAGAAACCATATGAATGTAAGCAGTGTTCTAAAGCCTTTTCTTTTTACAGTTCCTATCTAAGACATGAAA  733

Query  734  GAATGCACACTGGGGAGAAACCGTATG-----------------------------------------------  760
            |||..||.|||||||||||||||||||                                               
Sbjct  734  GAACACATACTGGGGAGAAACCGTATGAATGTAAACAGTGTTCTAAAGCCTTTCCTTTTTACAGTTCCTATCTA  807

Query  761  -------------------------------------AATGTAAGCAGTGTTCTAAAGCCTTGCCTGATTCCAG  797
                                                 |||||||||||||||||||||||||.|||||||||||
Sbjct  808  AGACATGAAAGAACACATACTGGGGAGAAACCATATAAATGTAAGCAGTGTTCTAAAGCCTTCCCTGATTCCAG  881

Query  798  TTCCTATATAAGACATGAAAGAACTCACACTGGAGAGAAACCATATACATGTAAACAGTGTGGGAAAGCCTTCA  871
            |||.|.|.|||.||||||||||||||||||||||||||||||.||||||||||||||.||||||||||||||||
Sbjct  882  TTCTTGTCTAATACATGAAAGAACTCACACTGGAGAGAAACCCTATACATGTAAACAATGTGGGAAAGCCTTCA  955

Query  872  GTGTTTCCAGTTCCCTTCGAAGACATGAAACCACTCACAGTGCAGAGAAACCCTATGAGTGTAAGCAATGCGGG  945
            ||||||||.|||||||||.||||||||||||||||||||||||||||||||||||||..|||.|||||||.|||
Sbjct  956  GTGTTTCCGGTTCCCTTCAAAGACATGAAACCACTCACAGTGCAGAGAAACCCTATGCATGTCAGCAATGTGGG  1029

Query  946  AAAACATTTCATCATCTTGGAAGCTTTCAGATACACATGAAAAGGCACACTGGAGATCGACCTCATAAATGTAA  1019
            |||.|.|||||||||||.|||||||||||.|.||||||||.|||||||||||||.||.||||||||||||||||
Sbjct 1030  AAAGCGTTTCATCATCTGGGAAGCTTTCAAAGACACATGATAAGGCACACTGGAAATGGACCTCATAAATGTAA  1103

Query 1020  GATATGTGGGAAAGGCTTTGATCGTCCCAGTTTAGTTCGATATCATGAACGAATTCACACTGGAGAGAAACCCT  1093
            ||||||||||||||||||||||.||||.||||.|.|.|.|..|||||||.|||.||||||||||||||||||||
Sbjct 1104  GATATGTGGGAAAGGCTTTGATTGTCCTAGTTCACTGCAAAGTCATGAAAGAACTCACACTGGAGAGAAACCCT  1177

Query 1094  ATGAATGCAAGCAGTGTGGGAAAACGTTATCTCATAGCTCAAGCTTTCGAAGACACATGATAATGCACACTGGA  1167
            |||||||||||||||||||||||.|.|||||||||.||||||||||||||||.||.||||||||||||||||||
Sbjct 1178  ATGAATGCAAGCAGTGTGGGAAAGCATTATCTCATCGCTCAAGCTTTCGAAGTCATATGATAATGCACACTGGA  1251

Query 1168  GGTGGACCTCATAAATGCAAGATATGTGGGAAAGCTTTTGTTTATCCTAGTGTATGTCAAAGACACGAAAAGTC  1241
            |.|||||||||||||||||||.|||||||||||||.|||||||||||.|||||||.|||||||||.||||.|.|
Sbjct 1252  GATGGACCTCATAAATGCAAGGTATGTGGGAAAGCCTTTGTTTATCCCAGTGTATTTCAAAGACATGAAAGGAC  1325

Query 1242  TCACAGTGGAGAGAAACCCTATGAATGCAAGCAGTGTGGGAAAGCGT----TATCTCATAGCTCAAGCTTTCGA  1311
            |||||.||.|||||||||||||.||||.||.||.|||||.|||||.|    |||.|| .||.||   |.|||||
Sbjct 1326  TCACACTGCAGAGAAACCCTATAAATGTAAACAATGTGGCAAAGCCTACCGTATTTC-CAGTTC---CCTTCGA  1395

Query 1312  AGACATATGGTAA----TGCATACGGGAGATGGGCCGAATAAATGCAAGGTATGTGGGAAAGCCTTTGTTTATC  1381
            ||.|||   |.||    | |||||.|||||....||..||||||||||   |..|||||||||||.|.||.||.
Sbjct 1396  AGGCAT---GAAACAACT-CATACTGGAGAGAAACCCTATAAATGCAA---ACTTGGGAAAGCCTGTATTGATT  1462

Query 1382  CCAGTGTATGTCAAAGACATGAAAAGACT--CACTGGAGAGAAACAATA-------------------------  1428
            .|.||...|.|||||..||..|||..|||  ||||||||||||.|.|||                         
Sbjct 1463  TCTGTTCCTTTCAAAATCACAAAACAACTCACACTGGAGAGAAGCCATATGAGTGTAAGGAATGTGGGAAAGCA  1536

Query 1429  --------------------------------------------------------------------------  1428
                                                                                      
Sbjct 1537  TTCAGTCGTTTCAGATACCTTTCTCGACATAAAAGGACTCACACAGGAGAGAAACCTTATGAGTGTAAAACATG  1610

Query 1429  --------------------------------------------------------------------------  1428
                                                                                      
Sbjct 1611  TAGGAAAGCCTTCGGTCATTATGATAACTTAAAGGTACATGAAAGAATTCACTCTGGAGAGAAGCCGTATGAAT  1684

Query 1429  --------------------------------------------------------------------------  1428
                                                                                      
Sbjct 1685  GTAAGGAATGTGGGAAAGCATTCTCTTGGCTCACTTGCTTTCTACGACATGAAAGAATTCACATGAGAGAGAAA  1758

Query 1429  --------------------------------------------------------------------------  1428
                                                                                      
Sbjct 1759  TCCTATGAATGTCCACAATGTGGTAAAGCCTTCACTCATTCCCGTTTTCTTCAAGGACATGAAAAAACTCATAC  1832

Query 1429  --------------------------------------------------------------------------  1428
                                                                                      
Sbjct 1833  TGGAGAGAACCCGTATGAATGTAAGGAATGTGGGAAAGCATTTGCTTCTCTCAGTTCCTTGCATAGACATAAAA  1906

Query 1429  --------------------------------------------------------------------------  1428
                                                                                      
Sbjct 1907  AGACTCACTGGAAAAAAACTCACACTGGAGAGAACCCATATGAATGTAAGGAATGTGGGAAAGCATTTGCTTCT  1980

Query 1429  ---------------------------------  1428
                                             
Sbjct 1981  CTCAGTTCCTTGCATAGACATAAAAAGACTCAC  2013

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