Nucleotide Global Alignment

Description

Query:
TRCN0000481404
Subject:
XM_011524255.1
Aligned Length:
2415
Identities:
633
Gaps:
1782

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCCCAGCCACTGGCCTTCATCCTCGATGTCCCTGAGACCCCAGGGGACCAGGGCCAGGGCCCCAGCCCCTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGATGAAAGCGAAGTGCACGACTCCTTCCAGCAGCTCATCCAGGAGCAGAGCCAGTGCACGGCCCAGGAGGGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGGAGCTGCAGCAGAGAGAGCGGGAGGTGACAGGAAGTAGCCAGCAGACACTCTGGCGGCCCGAGGGCACCCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCACGGCCACACTCCGCATCCTGGCCAGCATGCCCAGCCGCACCATTGGCCGCAGCCGAGGTGCCATCATCTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCAGTACTACAACCGCACGGTGCAGCTTCGGTGCAGGAGCAGCCGGCCCCTGCTCGGGAACTTTGTCCGCTCCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCTGGCCCAGCCTCCGCCTGTACGACCTGGAGCTGGACCCCACGGCCCTGGAGGAGGAGGAGAAGCAGAGCCTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTGGTGAAGGAGCTCCAGAGCCTGGCAGTGGCACAGCGGGACCACATGCTTCGCGGGATGCCCTTAAGCCTGGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGAGAAACGCAGCCTGCGAGAGAAGAGCAGGACCCCGAGGGGGAAGTGGAGGGGCCAGCCGGGCAGCGGCGGGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCTGCTCCTGCTGTGGCCGGCTCAGATATGCCTGCGTGCTGGCCTTGCACAGCCTGGGCCTGGCGCTGCTCTCC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCCCTGCAGGCCCTGATGCCGTGGCGCTACGCCCTGAAGCGCATCGGGGGCCAGTTCGGCTCCAGCGTGCTCTC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTACTTCCTCTTTCTCAAGACCCTGCTGGCTTTCAATGCCCTCCTGCTGCTGCTGCTGGTGGCCTTCATCATGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCCTCAGGTCGCCTTCCCACCCGCCCTGCCGGGCCCTGCCCCCGTCTGCACAGGCCTGGAGCTCCTCACAGGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCGGGTTGCTTCACCCACACCGTCATGTACTACGGCCACTACAGTAACGCCACGCTGAACCAGCCGTGTGGCAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCCCCTGGATGGCAGCCAGTGCACACCCAGGGTGGGTGGCCTGCCCTACAACATGCCCCTGGCCTACCTCTCCA  1036

Query    1  -----------------------------------------------ATGGCTCACTCTTTCGGGGAGAGCTAC  27
                                                           |||||||||||||||||||||||||||
Sbjct 1037  CTGTGGGCGTGAGCTTCTTTATCACCTGCATCACCCTGGTGTACAGCATGGCTCACTCTTTCGGGGAGAGCTAC  1110

Query   28  CGGGTGGGCAGCACCTCTGGCATCCACGCCATCACCGTCTTCTGCTCCTGGGACTACAAGGTGACGCAGAAGCG  101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CGGGTGGGCAGCACCTCTGGCATCCACGCCATCACCGTCTTCTGCTCCTGGGACTACAAGGTGACGCAGAAGCG  1184

Query  102  GGCCTCCCGCCTCCAGCAGGACAATATTCGCACCCGGCTGAAGGAGCTGCTGGCCGAGTGGCAGCTGCGGCACA  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GGCCTCCCGCCTCCAGCAGGACAATATTCGCACCCGGCTGAAGGAGCTGCTGGCCGAGTGGCAGCTGCGGCACA  1258

Query  176  GCCCCAGGAGCGTGTGCGGGAGGCTGCGGCAGGCGGCTGTGCTGGGGCTTGTGTGGCTGCTGTGTCTGGGGACC  249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GCCCCAGGAGCGTGTGCGGGAGGCTGCGGCAGGCGGCTGTGCTGGGGCTTGTGTGGCTGCTGTGTCTGGGGACC  1332

Query  250  GCGCTGGGCTGCGCCGTGGCCGTCCACGTCTTCTCGGAGTTCATGATCCAGAGTCCAGAGGCTGCTGGCCAGGA  323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GCGCTGGGCTGCGCCGTGGCCGTCCACGTCTTCTCGGAGTTCATGATCCAGAGTCCAGAGGCTGCTGGCCAGGA  1406

Query  324  GGCTGTGCTGCTGGTCCTGCCCCTGGTGGTTGGCCTCCTCAACCTGGGGGCCCCCTACCTGTGCCGTGTCCTGG  397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GGCTGTGCTGCTGGTCCTGCCCCTGGTGGTTGGCCTCCTCAACCTGGGGGCCCCCTACCTGTGCCGTGTCCTGG  1480

Query  398  CCGCCCTGGAGCCGCATGACTCCCCGGTACTGGAGGTGTACGTGGCCATCTGCAGGAACCTCATCCTCAAGCTG  471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CCGCCCTGGAGCCGCATGACTCCCCGGTACTGGAGGTGTACGTGGCCATCTGCAGGAACCTCATCCTCAAGCTG  1554

Query  472  GCCATCCTGGGGACACTGTGCTACCACTGGCTGGGCCGCAGGGTGGGCGTCCTGCAGGGCCAGTGCTGGGAGGA  545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GCCATCCTGGGGACACTGTGCTACCACTGGCTGGGCCGCAGGGTGGGCGTCCTGCAGGGCCAGTGCTGGGAGGA  1628

Query  546  TTTTGTGGGCCAGGAGCTGTACCGGTTCCTGGTGATGGACTTCGTCCTCATGTTGCTGGACACGCTTTTTGGGG  619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TTTTGTGGGCCAGGAGCTGTACCGGTTCCTGGTGATGGACTTCGTCCTCATGTTGCTGGACACGCTTTTTGGGG  1702

Query  620  AACTGGTGTGGAGG------------------------------------------------------------  633
            ||||||||||||||                                                            
Sbjct 1703  AACTGGTGTGGAGGATTATCTCCGAGAAGAAGCTGAAGAGGAGGCGGAAGCCGGAGTTTGACATTGCCCGGAAT  1776

Query  634  --------------------------------------------------------------------------  633
                                                                                      
Sbjct 1777  GTCCTGGAGCTGATTTATGGGCAGACTCTGACCTGGCTGGGGGTGCTCTTCTCGCCCCTCCTCCCCGCCGTGCA  1850

Query  634  --------------------------------------------------------------------------  633
                                                                                      
Sbjct 1851  GATCATCAAGCTGCTGCTCGTCTTCTATGTCAAGAAGACCAGCCTTCTGGCCAACTGCCAGGCGCCGCGCCGGC  1924

Query  634  --------------------------------------------------------------------------  633
                                                                                      
Sbjct 1925  CCTGGCTGGCCTCACACATGAGCACCGTCTTCCTCACGCTGCTCTGCTTCCCCGCCTTCCTGGGCGCCGCTGTC  1998

Query  634  --------------------------------------------------------------------------  633
                                                                                      
Sbjct 1999  TTCCTCTGCTACGCCGTCTGGCAGGTGAAGCCCTCGAGCACCTGCGGCCCCTTCCGGACCCTGGACACCATGTA  2072

Query  634  --------------------------------------------------------------------------  633
                                                                                      
Sbjct 2073  CGAGGCCGGCAGGGTGTGGGTGCGCCACCTGGAGGCGGCAGGCCCCAGGGTCTCCTGGCTGCCCTGGGTGCACC  2146

Query  634  --------------------------------------------------------------------------  633
                                                                                      
Sbjct 2147  GGTACCTGATGGAAAACACCTTCTTTGTCTTCCTGGTGTCAGCCCTGCTGCTGGCCGTGATCTACCTCAACATC  2220

Query  634  --------------------------------------------------------------------------  633
                                                                                      
Sbjct 2221  CAGGTGGTGCGGGGCCAGCGCAAGGTCATCTGCCTGCTCAAGGAGCAGATCAGCAATGAGGGTGAGGACAAAAT  2294

Query  634  --------------------------------------------------------------------------  633
                                                                                      
Sbjct 2295  CTTCTTAATCAACAAGCTTCACTCCATCTACGAGAGGAAGGAGAGGGAGGAGAGGAGCAGGGTTGGGACAACCG  2368

Query  634  -----------------------------------------------  633
                                                           
Sbjct 2369  AGGAGGCTGCGGCACCCCCTGCCCTGCTCACAGATGAACAGGATGCC  2415

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.