Nucleotide Global Alignment

Description

Query:
TRCN0000481616
Subject:
XM_006507334.1
Aligned Length:
1798
Identities:
1438
Gaps:
245

Alignment

Query    1  ATGTTTGGGATTCAGGAGAATATTCCGCGCGGGGGGACGACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGAA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGTTTGGGATTCAGGAGAATATTCCGCGCGGGGGGACGACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGAA  74

Query   75  CCCGGTGCGCTCGTGGATGCACACGGCGGGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGCTGG  148
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCCGGTGCGCTCGTGGATGCACACGGCAGGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGCTGG  148

Query  149  CGCGGGCGCACTTCGAGAAGCAGCCGCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCGCTC  222
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGCGGGCGCACTTCGAGAAGCAGCCTCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCGCTC  222

Query  223  TACGATAGGCAGGGGCAGCCGGTGGAGATTGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAGAGCC  296
            |||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TACGACAGGCAGGGGCAGCCGGTGGAGATCGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAGAGCC  296

Query  297  AAACAACGAGAAAACCAACAACGGCATCCACTATAAACTCCAGTTATTGTACAGCAACGGAGTCAGAACAGAGC  370
            .||||||||||||||||||||||||||.|||||.||.||.|||.||.||||||||||.||.|||||||||||||
Sbjct  297  GAACAACGAGAAAACCAACAACGGCATTCACTACAAGCTGCAGCTACTGTACAGCAATGGCGTCAGAACAGAGC  370

Query  371  AAGATCTGTATGTTCGCCTCATAGATTCAATGACCAAACAGGCCATCGTCTACGAGGGCCAGGACAAGAACCCG  444
            |||||||||||||.|||||||||||||||||||||||||||||||||||.||.||.||||||||||||||.|||
Sbjct  371  AAGATCTGTATGTCCGCCTCATAGATTCAATGACCAAACAGGCCATCGTGTATGAAGGCCAGGACAAGAATCCG  444

Query  445  GAGATGTGCCGTGTGCTGCTGACCCACGAGATCATGTGCAGCCGGTGCTGTGACAAGAAAAGTTGTGGCAATAG  518
            |||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  445  GAGATGTGCCGCGTGCTGCTGACCCACGAGATCATGTGCAGCCGGTGCTGTGACAAGAAGAGTTGTGGCAATAG  518

Query  519  AAACGAAACGCCCTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTTTTCCTCAAGTGCAATCAGAACT  592
            ||||||.||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct  519  AAACGAGACACCCTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTCTTCCTCAAGTGCAATCAGAACT  592

Query  593  GTTTGAAGAATGCAGGCAACCCTCGAGATATGCGGAGATTCCAGGTTGTTGTATCGACAACAGTCAACGTGGAC  666
            |..||||||||||.|||||||||||.||.||||||||.||||||||.|||||||||||||||||||||||||||
Sbjct  593  GCCTGAAGAATGCGGGCAACCCTCGGGACATGCGGAGGTTCCAGGTCGTTGTATCGACAACAGTCAACGTGGAC  666

Query  667  GGCCACGTGCTGGCCGTGTCAGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGCCT  740
            ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGCCACGTGCTGGCCGTGTCTGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGCCT  740

Query  741  AGACCCGTCAGAA---------------------------GCCACTCCGTGCATCAAGGCCATCAGTCCCAGTG  787
            |||||||||||||                           |||||||||||.||||||||.|||||.|||||||
Sbjct  741  AGACCCGTCAGAAGGTACGGCCCCTTCTTATCTGGAAAATGCCACTCCGTGTATCAAGGCTATCAGCCCCAGTG  814

Query  788  AAGGCTGGACCACGGGGGGTGCCACCGTCATCATAATTGGCGACAACTTCTTTGACGGGCTGCAAGTTGTATTC  861
            |||||||||||||||||||||||||.||.||||||||.||.|||||||||||||||||.||.||||||||.|||
Sbjct  815  AAGGCTGGACCACGGGGGGTGCCACTGTGATCATAATCGGGGACAACTTCTTTGACGGTCTACAAGTTGTGTTC  888

Query  862  GGAACTATGTTGGTGTGGAGCGAGCTGATAACTCCCCATGCCATCCGAGTCCAGACCCCGCCGAGGCACATTCC  935
            ||||||||||||||||||||.|||||||||||.|||||.|||||||||||.|||||.|||||..|.|||||.||
Sbjct  889  GGAACTATGTTGGTGTGGAGTGAGCTGATAACCCCCCACGCCATCCGAGTGCAGACGCCGCCTCGACACATCCC  962

Query  936  TGGCGTCGTCGAAGTGACCCTCTCCTACAAATCCAAGCAGTTCTGCAAAGGTGCTCCTGGGCGCTTTGTCTACA  1009
            |||.||.||.||||||||||||||||||||.||.|||||||||||||||||.||||||||.|||||||||||||
Sbjct  963  TGGAGTTGTTGAAGTGACCCTCTCCTACAAGTCTAAGCAGTTCTGCAAAGGCGCTCCTGGACGCTTTGTCTACA  1036

Query 1010  CCGCCCTTAATGAACCAACCATAGATTACGGCTTTCAGAGGTTGCAGAAAGTGATCCCAAGACATCCGGGTGAT  1083
            |.|||||||||||.||||||||||||||||||||.||||||||||||||||||||.||.||||||||.|||||.
Sbjct 1037  CTGCCCTTAATGAGCCAACCATAGATTACGGCTTCCAGAGGTTGCAGAAAGTGATACCCAGACATCCAGGTGAC  1110

Query 1084  CCCGAAAGGTTACCCAAGGAGGTGTTACTGAAGCGGGCGGCGGACCTGGTGGAAGCCTTATACGGAATGCCTCA  1157
            ||||||||||||||||||||.||||||||||||.||||.||.|||||.|||||||||||.||.||.||||||||
Sbjct 1111  CCCGAAAGGTTACCCAAGGAAGTGTTACTGAAGAGGGCAGCAGACCTTGTGGAAGCCTTGTATGGGATGCCTCA  1184

Query 1158  CAACAACCAGGAGATCATCTTGAAGCGAGCGGCGGACATCGCCGAGGCGCTGTACAGCGTTCCCCGCAATCACA  1231
            |||.|||||||||||||||.|||||.|||||||.|||||.||.||||||.||||||||||||||||||||||||
Sbjct 1185  CAATAACCAGGAGATCATCCTGAAGAGAGCGGCCGACATTGCTGAGGCGTTGTACAGCGTTCCCCGCAATCACA  1258

Query 1232  ACCAGATCCCCACCCTGGGCAACAACCCTGCACACACGGGCATGATGGGCGTCAACTCCTTCAGCAGCCAGCTA  1305
            ||||||||||||||||||||||||.|||.||||||||.|||||||||||.||.|||||||||||||||||||||
Sbjct 1259  ACCAGATCCCCACCCTGGGCAACACCCCAGCACACACTGGCATGATGGGTGTGAACTCCTTCAGCAGCCAGCTA  1332

Query 1306  GCCGTCAACGTGTCAGAGACGTCACAAGCCAACGACCAAGTCG-GC--TACAGTCGCA--ATACAAGCAGCGTG  1374
            |||||.||.|||||||||||.|||||||||||.||||||||.| ||  |.|||.|.||  ||   .|||||.| 
Sbjct 1333  GCCGTTAATGTGTCAGAGACCTCACAAGCCAATGACCAAGTAGTGCCGTCCAGCCCCACCAT---GGCAGCCT-  1402

Query 1375  TCCCCGCGAGGCTAC-GTCCCCAGCAGTACTCCCCAGCAGTCCAATTACAACACAGT--CAGCACTAGCATGAA  1445
                       ||.| |||.||       |||||      |.|||       ||.||  ||||||  .||    
Sbjct 1403  -----------CTTCGGTCACC-------CTCCC------TTCAA-------ACTGTAGCAGCAC--ACA----  1439

Query 1446  TGGATATGGAAGTGGCGCCATGGCCAGTCTAGGGGTCCCTGGCTCGCCTGGATTTCTTAATGGCTCCTCCGCTA  1519
                           ||.|||                               |||||.|.|  |||..|.||.|
Sbjct 1440  ---------------CGGCAT-------------------------------TTTCTCATT--CTCACCTGCCA  1465

Query 1520  A----CTCTCCCTACGGCA-TGAAACAGAAGAGCGCCTTCGCGCCCGTGGTCCGGCCCCAAGCCTCTCCTCCTC  1588
            |    .|||||     ||| ||||||||||||||||.||.||||||||||||||||||||||||||.|||||||
Sbjct 1466  ATGTCATCTCC-----GCAGTGAAACAGAAGAGCGCTTTTGCGCCCGTGGTCCGGCCCCAAGCCTCGCCTCCTC  1534

Query 1589  CTTCCTGCACCAGCGCCAACGGGAATGGACTGCAAGCTATG-TCTGGGCTGGTAGTCCCG-----CCAA---TG  1653
            |||||||||||||||||||||||||.||||||||||    | |||..|||||  ||.|||     .|||   ||
Sbjct 1535  CTTCCTGCACCAGCGCCAACGGGAACGGACTGCAAG----GCTCTCTGCTGG--GTGCCGAGGACGCAACCGTG  1602

Query 1654  --------------------------------------------------------------------------  1653
                                                                                      
Sbjct 1603  GAGAAGACAAACTGGCCCTTTTGTGAAGTCGGTGGTATATTCCACTTTGATGAACTAATGCTCAAAAAAGGAAC  1676

Query 1654  ----------------------  1653
                                  
Sbjct 1677  TGGAAAGCTATGTCTGGGCTGG  1698

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