Nucleotide Global Alignment

Description

Query:
TRCN0000487781
Subject:
XR_002957961.1
Aligned Length:
4273
Identities:
1211
Gaps:
3060

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACAGCGCGATGGCGGCGGCTCCTTTAGGCAGCTGAAAGGGGATTTAGGCCCGGAAGATCCGAGTCCATCCGCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGGGAGAGGGCAAGCGGGACCGGTAGGGGCCGGAGCAGCGGCGGCGGCGCTCGGACTGTCCCATCCGCCCCGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATTGAGGCGCTGGGAGCGGCGGGGCGACAGGAAAGCGATGGTGAAAGCGGGGCCGTGAGGGGGGCGGAGCCGGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCCGGACCCGCAGTAGCGGCAGCAGCGGCGCCGCCTCCCAGAGTTCAGACCCAGGAAGCGGCCGGGAGGGCAG  296

Query    1  -----------------------ATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGC  51
                                   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAGCGAATCGGGCCGCCGCCGCCATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGC  370

Query   52  GGCTCCTTCGGAGACATCTATCTCGGTACGGACATTGCTGCAGGAGAAGAGGTTGCCATCAAGCTTGAATGTGT  125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGCTCCTTCGGAGACATCTATCTCGGTACGGACATTGCTGCAGGAGAAGAGGTTGCCATCAAGCTTGAATGTGT  444

Query  126  CAAAACCAAACACCCTCAGCTCCACATTGAGAGCAAAATCTACAAGATGATGCAGGGAGGAGTGGGCATCCCCA  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAAAACCAAACACCCTCAGCTCCACATTGAGAGCAAAATCTACAAGATGATGCAGGGAGGAGTGGGCATCCCCA  518

Query  200  CCATCAGATGGTGCGGGGCAGAGGGGGACTACAACGTCATGGTGATGGAGCTGCTGGGGCCAAGCCTGGAGGAC  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CCATCAGATGGTGCGGGGCAGAGGGGGACTACAACGTCATGGTGATGGAGCTGCTGGGGCCAAGCCTGGAGGAC  592

Query  274  CTCTTCAACTTCTGCTCCAGGAAATTCAGCCTCAAAACCGTCCTGCTGCTTGCTGACCAAATGATCAGTCGCAT  347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTCTTCAACTTCTGCTCCAGGAAATTCAGCCTCAAAACCGTCCTGCTGCTTGCTGACCAAATGATCAGTCGCAT  666

Query  348  CGAATACATTCATTCAAAGAACTTCATCCACCGGGATGTGAAGCCAGACAACTTCCTCATGGGCCTGGGGAAGA  421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CGAATACATTCATTCAAAGAACTTCATCCACCGGGATGTGAAGCCAGACAACTTCCTCATGGGCCTGGGGAAGA  740

Query  422  AGGGCAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGATGCACGCACCCACCAGCACATC  495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGGGCAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGATGCACGCACCCACCAGCACATC  814

Query  496  CCCTATCGTGAGAACAAGAACCTCACGGGGACGGCGCGGTACGCCTCCATCAACACGCACCTTGGAATTGAACA  569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCCTATCGTGAGAACAAGAACCTCACGGGGACGGCGCGGTACGCCTCCATCAACACGCACCTTGGAATTGAACA  888

Query  570  ATCCCGAAGAGATGACTTGGAGTCTCTGGGCTACGTGCTAATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGG  643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATCCCGAAGAGATGACTTGGAGTCTCTGGGCTACGTGCTAATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGG  962

Query  644  GGCTGAAGGCTGCCACCAAGAGACAGAAATACGAAAGGATTAGCGAGAAGAAAATGTCCACCCCCATCGAAGTG  717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGCTGAAGGCTGCCACCAAGAGACAGAAATACGAAAGGATTAGCGAGAAGAAAATGTCCACCCCCATCGAAGTG  1036

Query  718  TTGTGTAAAGGCTACCCTTCCGAATTTGCCACATACCTGAATTTCTGCCGTTCCTTGCGTTTTGACGACAAGCC  791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTGTGTAAAGGCTACCCTTCCGAATTTGCCACATACCTGAATTTCTGCCGTTCCTTGCGTTTTGACGACAAGCC  1110

Query  792  TGACTACTCGTACCTGCGGCAGCTTTTCCGGAATCTGTTCCATCGCCAGGGCTTCTCCTATGACTACGTGTTCG  865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGACTACTCGTACCTGCGGCAGCTTTTCCGGAATCTGTTCCATCGCCAGGGCTTCTCCTATGACTACGTGTTCG  1184

Query  866  ACTGGAACATGCTCAAATTT------------------------------------------------------  885
            ||||||||||||||||||||                                                      
Sbjct 1185  ACTGGAACATGCTCAAATTTGTTGCTGTCTCGGCTTAAAATCTGACCTCCCCACCCCCGTGCATCTGGATAGTG  1258

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1259  CAGCACAGATCCGGCTGCCGGCTGCTGGCCACGCCACCACACCTGCACAGGCTGTTGGAGGCTGCAGGGTCCGG  1332

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1333  ACCCTGAGTGTACTCCTCGTCCGACCAAACGCTCTCATCCCCACCCCGCTTTCCTCCCCAGCTGTCACCATTTG  1406

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1407  GGGCCTGTCTTTGGCCTCCGATGGTTCCTGTCCCTCTCCTCTTTCTGCACGTGTTAGTGAGCATGTTCACAGAG  1480

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1481  CAGCAGGGGGTAGCTGCTGCCCATTTGGAAGTTTAAGGAAGTTCTGAGCCCACAGGGAGATGCCATGGCGAGTG  1554

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1555  GGGTTTTTTCGATTGTTGGGGGAGCTGAGAGGCCTGGCTCTGACCCCTTGTGGGGATGATGCTGTCATCCCATG  1628

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1629  AGGAGAAACGTGCAGCCTGTGGGGGGCTTTGCAGGCAGTCTCGTCCCAGTGCCCTTTGGTAGGTATTTTCTCAC  1702

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1703  GTGGCCGGGGCAGCCTAGGACCTAGGGTTGCTTTCTGCCAAAGCTGGTTCCATTCCGGCCTCACCTCCTGCCTC  1776

Query  886  -----GGTGCCAGCCGGGCCGCCGATGACGCCGAGCGGGAGCGCAGGGACCGAGAGGAGCGGCTGAGACACTCG  954
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CTCAGGGTGCCAGCCGGGCCGCCGATGACGCCGAGCGGGAGCGCAGGGACCGAGAGGAGCGGCTGAGACACTCG  1850

Query  955  CGGAACCCGGCTACCCGCGGCCTCCCTTCCACAGCCTCCGGCCGCCTGCGGGGGACGCAGGAAGTGGCTCCCCC  1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CGGAACCCGGCTACCCGCGGCCTCCCTTCCACAGCCTCCGGCCGCCTGCGGGGGACGCAGGAAGTGGCTCCCCC  1924

Query 1029  CACACCCCTCACCCCTACCTCACACACGGCTAACACCTCCCCCCGGCCCGTCTCCGGCATGGAGAGAGAGCGGA  1102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CACACCCCTCACCCCTACCTCACACACGGCTAACACCTCCCCCCGGCCCGTCTCCGGCATGGAGAGAGAGCGGA  1998

Query 1103  AAGTGAGTATGCGGCTGCACCGCGGGGCCCCCGTCAACATCTCCTCGTCCGACCTCACAGGCCGACAAGATACC  1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AAGTGAGTATGCGGCTGCACCGCGGGGCCCCCGTCAACATCTCCTCGTCCGACCTCACAGGCCGACAAGATACC  2072

Query 1177  TCTCGCATGTCCACCTCACAGAATAGCATTCCT-TTCGAACACCACGG------CAAG----------------  1227
            |||||||||||||||||||||      |||||| .|||        ||      |.||                
Sbjct 2073  TCTCGCATGTCCACCTCACAG------ATTCCTGGTCG--------GGTGGCTTCCAGTGGTCTTCAGTCTGTC  2132

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2133  GTGCACCGATGAGAACTCTCCTTATTGCTGTGAAGGGCAGACAATGCATGGCTGATCTACTCTGTTACCAATGG  2206

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2207  CTTTACTAGTGACACGTCCCCCGGTCTAGGATCGAAATGTTAACACCGGGAGCTCTCCAGGCCACTCACCCAGC  2280

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2281  GACGCTCGTGGGGGAAACATACTAAACGGACAGACTCCAAGAGCTGCCACCGCTGGGGCTGCACTGCGGCCCCC  2354

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2355  CACGTGAACTCGGTTGTAACGGGGCTGGGAAGAAAAGCAGAGAGAGAATTGCAGAGAATCAGACTCCTTTTCCA  2428

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2429  GGGCCTCAGCTCCCTCCAGTGGTGGCCGCCCTGTACTCCCTGACGATTCCACTGTAACTACCAATCTTCTACTT  2502

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2503  GGTTAAGACAGTTTTGTATCATTTTGCTAAAAATTATTGGCTTAAATCTGTGTAAAGAAAATCTGTCTTTTTAT  2576

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2577  TGTTTCTTGTCTGTTTTTGCAGTCTTACAAAAAAAATGTTGACTAAGGAATTCTGAGACAGGCTGGCTTGGAGT  2650

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2651  TAGTGTATGAGGTGGAGTCGGGCAGGGAGAAGGTGCAGGTGGATCTCAAGGGTGTGTGCTGTGTTTGTTTTGCA  2724

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2725  GTGTTTTATTGTCCGCTTTGGAGAGGAGATTTCTCATCAAAAGTCCGTGGTGTGTGTGTGTGCCCGTGTGTGGT  2798

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2799  GGGACCTCTTCAACCTGATTTTGGCGTCTCACCCTCCCTCCTCCCGTAATTGACATGCCTGCTGTCAGGAACTC  2872

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2873  TTGAGGCCCTCGGAGAGCAGTTAGGGACCGCAGGCTGCCGCGGGGCAGGGGTGCAGTGGGTGTTACCAGGCAAA  2946

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 2947  GCACTGCGCGCTTCTTCCCCAGGAGGTGGGCAGGCAGCTGAGAGCTTGGAAGCAGAGGCTTTGAGACCCTAGCA  3020

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3021  GGACAATTGGGAGTCCCAGGATTCAAGGTGGAAGATGCGTTTCTGGTCCCTTGGGAGAGGACTGTGAACCGAGA  3094

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3095  GGTGGTTACTGTAGTGTTTGTTGCCTTGCTGCCTTTGCACTCAGTCCATTTTCTCAGCACTCAATGCTCCTGTG  3168

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3169  CGGATTGGCACTCCGTCTGTATGAATGCCTGTGCTTAAAACCAGGAGCGGGGCTGTCCTTGCCACGTGCCAAGA  3242

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3243  CTAGCTCAGAAAAGCCGGCAGGCCAGAAGGACCCACCCTGAGGTGCCAAGGAGCAGGTGACTCTCCCAACCGGA  3316

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3317  CCCAGAACCTTCACGGCCAGAAAGTAGAGTCTGCGCTGTGACCTTCTGTTGGGCGCGTGTCTGTTGGTCAGAAG  3390

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3391  TGAAGCAGCGTGCGTGGGGCCGAGTCCCACCAGAAGGCAGGTGGCCTCCGTGAGCTGGTGCTGCCCCAGGCTCC  3464

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3465  ATGCTGCTGTGCCCTGAGGTTCCCAGGATGCCTTCTCGCCTCTCACTCCGCAGCACTTGGGCGGTAGCCAGTGG  3538

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3539  CCATGTGCTCCCAACCCCAATGCGCAGGGCAGTCTGTGTTCGTGGGCACTTCGGCTGGACCCCATCACGATGGA  3612

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3613  CGATGTTCCCTTTGGACTCTAGGGCTTCGAAGGTGTGCACCTTGGTTCTCCCTTCTCCTCCCCAGAGTTCCCCG  3686

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3687  GATGCCATAACTGGCTGGCGTCCCAGAACACAGTTGTTCACCCCCCCACCAGCTGGCTGGCCGTCTGCCTGAGC  3760

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3761  CCATGGATGCTTTCTCAATCCTAGGCTGGTTACTGTGTAAGCGTTTTGGAGTACGGGGCCTTGAGCGGGTGGGA  3834

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3835  GCTGTGTGTTGAAGTACAGAGGGAGGTTGGGGTGGGTCAGAGCCGAGTTAAGAGATTTTCTTTGTTGCTGGACC  3908

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3909  CCTTCTTGAAGGTAGACGTCCCCCACCCGGAGAGACGTCGCGCTGTGGCCTGAAGTGGCGCAAGCTTGCTTTGT  3982

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 3983  AAATATCTGTGGTCCCGATGTAGTGCCCAGAACGTTTGTGCGAGGCAGCTCTGCGCCCGGGTTCCAGCCCGAGC  4056

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 4057  CTCGCCGGGTCGCGTCTTCGGAGTGCTTGTGACAGTCCTTGCCCAGTATCTAGTCCCCGTCGCCCCGTGCAGGA  4130

Query 1228  --------------------------------------------------------------------------  1227
                                                                                      
Sbjct 4131  GACGTAGGTAGGACGTCGTGTCAGCTGTGCACTGACGGCCAGTCTCCGAGCTGTGCGTTTGTATCGCCACTGTA  4204

Query 1228  -------------------------------------------------------  1227
                                                                   
Sbjct 4205  TTTGTGTACTTTAACAATCGTGTAAATAATAAATTCATAATGACTTCTACCTTTC  4259

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