Nucleotide Global Alignment

Description

Query:
TRCN0000487884
Subject:
XR_002957961.1
Aligned Length:
4260
Identities:
1220
Gaps:
3033

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACAGCGCGATGGCGGCGGCTCCTTTAGGCAGCTGAAAGGGGATTTAGGCCCGGAAGATCCGAGTCCATCCGCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGGGAGAGGGCAAGCGGGACCGGTAGGGGCCGGAGCAGCGGCGGCGGCGCTCGGACTGTCCCATCCGCCCCGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATTGAGGCGCTGGGAGCGGCGGGGCGACAGGAAAGCGATGGTGAAAGCGGGGCCGTGAGGGGGGCGGAGCCGGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCCGGACCCGCAGTAGCGGCAGCAGCGGCGCCGCCTCCCAGAGTTCAGACCCAGGAAGCGGCCGGGAGGGCAG  296

Query    1  -----------------------ATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGC  51
                                   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAGCGAATCGGGCCGCCGCCGCCATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGC  370

Query   52  GGCTCCTTCGGAGACATCTATCTCGGTACGGACATTGCTGCAGGAGAAGAGGTTGCCATCAAGCTTGAATGTGT  125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGCTCCTTCGGAGACATCTATCTCGGTACGGACATTGCTGCAGGAGAAGAGGTTGCCATCAAGCTTGAATGTGT  444

Query  126  CAAAACCAAACACCCTCAGCTCCACATTGAGAGCAAAATCTACAAGATGATGCAGGGAGGAGTGGGCATCCCCA  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAAAACCAAACACCCTCAGCTCCACATTGAGAGCAAAATCTACAAGATGATGCAGGGAGGAGTGGGCATCCCCA  518

Query  200  CCATCAGATGGTGCGGGGCAGAGGGGGACTACAACGTCATGGTGATGGAGCTGCTGGGGCCAAGCCTGGAGGAC  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CCATCAGATGGTGCGGGGCAGAGGGGGACTACAACGTCATGGTGATGGAGCTGCTGGGGCCAAGCCTGGAGGAC  592

Query  274  CTCTTCAACTTCTGCTCCAGGAAATTCAGCCTCAAAACCGTCCTGCTGCTTGCTGACCAAATGATCAGTCGCAT  347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTCTTCAACTTCTGCTCCAGGAAATTCAGCCTCAAAACCGTCCTGCTGCTTGCTGACCAAATGATCAGTCGCAT  666

Query  348  CGAATACATTCATTCAAAGAACTTCATCCACCGGGATGTGAAGCCAGACAACTTCCTCATGGGCCTGGGGAAGA  421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CGAATACATTCATTCAAAGAACTTCATCCACCGGGATGTGAAGCCAGACAACTTCCTCATGGGCCTGGGGAAGA  740

Query  422  AGGGCAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGATGCACGCACCCACCAGCACATC  495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGGGCAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGATGCACGCACCCACCAGCACATC  814

Query  496  CCCTATCGTGAGAACAAGAACCTCACGGGGACGGCGCGGTACGCCTCCATCAACACGCACCTTGGAATTGAACA  569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCCTATCGTGAGAACAAGAACCTCACGGGGACGGCGCGGTACGCCTCCATCAACACGCACCTTGGAATTGAACA  888

Query  570  ATCCCGAAGAGATGACTTGGAGTCTCTGGGCTACGTGCTAATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGG  643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATCCCGAAGAGATGACTTGGAGTCTCTGGGCTACGTGCTAATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGG  962

Query  644  GGCTGAAGGCTGCCACCAAGAGACAGAAATACGAAAGGATTAGCGAGAAGAAAATGTCCACCCCCATCGAAGTG  717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGCTGAAGGCTGCCACCAAGAGACAGAAATACGAAAGGATTAGCGAGAAGAAAATGTCCACCCCCATCGAAGTG  1036

Query  718  TTGTGTAAAGGCTACCCTTCCGAATTTGCCACATACCTGAATTTCTGCCGTTCCTTGCGTTTTGACGACAAGCC  791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTGTGTAAAGGCTACCCTTCCGAATTTGCCACATACCTGAATTTCTGCCGTTCCTTGCGTTTTGACGACAAGCC  1110

Query  792  TGACTACTCGTACCTGCGGCAGCTTTTCCGGAATCTGTTCCATCGCCAGGGCTTCTCCTATGACTACGTGTTCG  865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGACTACTCGTACCTGCGGCAGCTTTTCCGGAATCTGTTCCATCGCCAGGGCTTCTCCTATGACTACGTGTTCG  1184

Query  866  ACTGGAACATGCTCAAATTT------------------------------------------------------  885
            ||||||||||||||||||||                                                      
Sbjct 1185  ACTGGAACATGCTCAAATTTGTTGCTGTCTCGGCTTAAAATCTGACCTCCCCACCCCCGTGCATCTGGATAGTG  1258

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1259  CAGCACAGATCCGGCTGCCGGCTGCTGGCCACGCCACCACACCTGCACAGGCTGTTGGAGGCTGCAGGGTCCGG  1332

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1333  ACCCTGAGTGTACTCCTCGTCCGACCAAACGCTCTCATCCCCACCCCGCTTTCCTCCCCAGCTGTCACCATTTG  1406

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1407  GGGCCTGTCTTTGGCCTCCGATGGTTCCTGTCCCTCTCCTCTTTCTGCACGTGTTAGTGAGCATGTTCACAGAG  1480

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1481  CAGCAGGGGGTAGCTGCTGCCCATTTGGAAGTTTAAGGAAGTTCTGAGCCCACAGGGAGATGCCATGGCGAGTG  1554

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1555  GGGTTTTTTCGATTGTTGGGGGAGCTGAGAGGCCTGGCTCTGACCCCTTGTGGGGATGATGCTGTCATCCCATG  1628

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1629  AGGAGAAACGTGCAGCCTGTGGGGGGCTTTGCAGGCAGTCTCGTCCCAGTGCCCTTTGGTAGGTATTTTCTCAC  1702

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1703  GTGGCCGGGGCAGCCTAGGACCTAGGGTTGCTTTCTGCCAAAGCTGGTTCCATTCCGGCCTCACCTCCTGCCTC  1776

Query  886  -----GGTGCCAGCCGGGCCGCCGATGACGCCGAGCGGGAGCGCAGGGACCGAGAGGAGCGGCTGAGACACTCG  954
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CTCAGGGTGCCAGCCGGGCCGCCGATGACGCCGAGCGGGAGCGCAGGGACCGAGAGGAGCGGCTGAGACACTCG  1850

Query  955  CGGAACCCGGCTACCCGCGGCCTCCCTTCCACAGCCTCCGGCCGCCTGCGGGGGACGCAGGAAGTGGCTCCCCC  1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CGGAACCCGGCTACCCGCGGCCTCCCTTCCACAGCCTCCGGCCGCCTGCGGGGGACGCAGGAAGTGGCTCCCCC  1924

Query 1029  CACACCCCTCACCCCTACCTCACACACGGCTAACACCTCCCCCCGGCCCGTCTCCGGCATGGAGAGAGAGCGGA  1102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CACACCCCTCACCCCTACCTCACACACGGCTAACACCTCCCCCCGGCCCGTCTCCGGCATGGAGAGAGAGCGGA  1998

Query 1103  AAGTGAGTATGCGGCTGCACCGCGGGGCCCCCGTCAACATCTCCTCGTCCGACCTCACAGGCCGACAAGATACC  1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AAGTGAGTATGCGGCTGCACCGCGGGGCCCCCGTCAACATCTCCTCGTCCGACCTCACAGGCCGACAAGATACC  2072

Query 1177  TCTCGCATGTCCACCTCACAGA-----------ATAGCATTC--------------CTTTCGAACACC------  1219
            ||||||||||||||||||||||           .|.|| |||              ||.|||..||||      
Sbjct 2073  TCTCGCATGTCCACCTCACAGATTCCTGGTCGGGTGGC-TTCCAGTGGTCTTCAGTCTGTCGTGCACCGATGAG  2145

Query 1220  -AC-------------GGCAAGG---------------------------------------------------  1228
             ||             |..||||                                                   
Sbjct 2146  AACTCTCCTTATTGCTGTGAAGGGCAGACAATGCATGGCTGATCTACTCTGTTACCAATGGCTTTACTAGTGAC  2219

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2220  ACGTCCCCCGGTCTAGGATCGAAATGTTAACACCGGGAGCTCTCCAGGCCACTCACCCAGCGACGCTCGTGGGG  2293

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2294  GAAACATACTAAACGGACAGACTCCAAGAGCTGCCACCGCTGGGGCTGCACTGCGGCCCCCCACGTGAACTCGG  2367

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2368  TTGTAACGGGGCTGGGAAGAAAAGCAGAGAGAGAATTGCAGAGAATCAGACTCCTTTTCCAGGGCCTCAGCTCC  2441

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2442  CTCCAGTGGTGGCCGCCCTGTACTCCCTGACGATTCCACTGTAACTACCAATCTTCTACTTGGTTAAGACAGTT  2515

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2516  TTGTATCATTTTGCTAAAAATTATTGGCTTAAATCTGTGTAAAGAAAATCTGTCTTTTTATTGTTTCTTGTCTG  2589

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2590  TTTTTGCAGTCTTACAAAAAAAATGTTGACTAAGGAATTCTGAGACAGGCTGGCTTGGAGTTAGTGTATGAGGT  2663

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2664  GGAGTCGGGCAGGGAGAAGGTGCAGGTGGATCTCAAGGGTGTGTGCTGTGTTTGTTTTGCAGTGTTTTATTGTC  2737

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2738  CGCTTTGGAGAGGAGATTTCTCATCAAAAGTCCGTGGTGTGTGTGTGTGCCCGTGTGTGGTGGGACCTCTTCAA  2811

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2812  CCTGATTTTGGCGTCTCACCCTCCCTCCTCCCGTAATTGACATGCCTGCTGTCAGGAACTCTTGAGGCCCTCGG  2885

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2886  AGAGCAGTTAGGGACCGCAGGCTGCCGCGGGGCAGGGGTGCAGTGGGTGTTACCAGGCAAAGCACTGCGCGCTT  2959

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 2960  CTTCCCCAGGAGGTGGGCAGGCAGCTGAGAGCTTGGAAGCAGAGGCTTTGAGACCCTAGCAGGACAATTGGGAG  3033

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3034  TCCCAGGATTCAAGGTGGAAGATGCGTTTCTGGTCCCTTGGGAGAGGACTGTGAACCGAGAGGTGGTTACTGTA  3107

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3108  GTGTTTGTTGCCTTGCTGCCTTTGCACTCAGTCCATTTTCTCAGCACTCAATGCTCCTGTGCGGATTGGCACTC  3181

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3182  CGTCTGTATGAATGCCTGTGCTTAAAACCAGGAGCGGGGCTGTCCTTGCCACGTGCCAAGACTAGCTCAGAAAA  3255

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3256  GCCGGCAGGCCAGAAGGACCCACCCTGAGGTGCCAAGGAGCAGGTGACTCTCCCAACCGGACCCAGAACCTTCA  3329

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3330  CGGCCAGAAAGTAGAGTCTGCGCTGTGACCTTCTGTTGGGCGCGTGTCTGTTGGTCAGAAGTGAAGCAGCGTGC  3403

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3404  GTGGGGCCGAGTCCCACCAGAAGGCAGGTGGCCTCCGTGAGCTGGTGCTGCCCCAGGCTCCATGCTGCTGTGCC  3477

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3478  CTGAGGTTCCCAGGATGCCTTCTCGCCTCTCACTCCGCAGCACTTGGGCGGTAGCCAGTGGCCATGTGCTCCCA  3551

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3552  ACCCCAATGCGCAGGGCAGTCTGTGTTCGTGGGCACTTCGGCTGGACCCCATCACGATGGACGATGTTCCCTTT  3625

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3626  GGACTCTAGGGCTTCGAAGGTGTGCACCTTGGTTCTCCCTTCTCCTCCCCAGAGTTCCCCGGATGCCATAACTG  3699

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3700  GCTGGCGTCCCAGAACACAGTTGTTCACCCCCCCACCAGCTGGCTGGCCGTCTGCCTGAGCCCATGGATGCTTT  3773

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3774  CTCAATCCTAGGCTGGTTACTGTGTAAGCGTTTTGGAGTACGGGGCCTTGAGCGGGTGGGAGCTGTGTGTTGAA  3847

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3848  GTACAGAGGGAGGTTGGGGTGGGTCAGAGCCGAGTTAAGAGATTTTCTTTGTTGCTGGACCCCTTCTTGAAGGT  3921

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3922  AGACGTCCCCCACCCGGAGAGACGTCGCGCTGTGGCCTGAAGTGGCGCAAGCTTGCTTTGTAAATATCTGTGGT  3995

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 3996  CCCGATGTAGTGCCCAGAACGTTTGTGCGAGGCAGCTCTGCGCCCGGGTTCCAGCCCGAGCCTCGCCGGGTCGC  4069

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 4070  GTCTTCGGAGTGCTTGTGACAGTCCTTGCCCAGTATCTAGTCCCCGTCGCCCCGTGCAGGAGACGTAGGTAGGA  4143

Query 1229  --------------------------------------------------------------------------  1228
                                                                                      
Sbjct 4144  CGTCGTGTCAGCTGTGCACTGACGGCCAGTCTCCGAGCTGTGCGTTTGTATCGCCACTGTATTTGTGTACTTTA  4217

Query 1229  ------------------------------------------  1228
                                                      
Sbjct 4218  ACAATCGTGTAAATAATAAATTCATAATGACTTCTACCTTTC  4259

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