Nucleotide Global Alignment

Description

Query:
TRCN0000487983
Subject:
XM_017318219.1
Aligned Length:
2159
Identities:
1219
Gaps:
820

Alignment

Query    1  ATGTTTGGGAAGAAAAAGAAAAAGATTGAAATATCTGGCCCGTCCAACTTTGAACACAGGGTTCATACTGGGTT  74
            ||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||||||||||.||
Sbjct    1  ATGTTTGGGAAGAAAAAGAAAAAGATCGAAATATCTGGCCCATCCAACTTTGAACACAGGGTTCATACTGGATT  74

Query   75  TGATCCACAAGAGCAGAAGTTTACCGGCCTTCCCCAGCAGTGGCACAGCCTGTTAGCAGATACGGCCAACAGGC  148
            ||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.||||||||||
Sbjct   75  TGATCCACAAGAGCAGAAGTTTACTGGCCTTCCCCAGCAGTGGCACAGCCTGTTAGCAGACACAGCCAACAGGC  148

Query  149  CAAAGCCTATGGTGGACCCTTCATGCATCACACCCATCCAGCTGGCTCCTATGAAGACAATCGTTAGAGGAAAC  222
            |.|||||.|||||||||||.|||||||||||||||||.|||||||||||.|||                     
Sbjct  149  CCAAGCCCATGGTGGACCCATCATGCATCACACCCATACAGCTGGCTCCCATG---------------------  201

Query  223  AAACCCTGCAAGGAAACCTCCATCAACGGCCTGCTAGAGGATTTTGACAACATCTCGGTGACTCGCTCCAACTC  296
                                                                                      
Sbjct  202  --------------------------------------------------------------------------  201

Query  297  CCTAAGGAAAGAAAGCCCACCCACCCCAGATCAGGGAGCCTCCAGCCACGGTCCAGGCCACGCGGAAGAAAATG  370
                                                                                      
Sbjct  202  --------------------------------------------------------------------------  201

Query  371  GCTTCATCACCTTCTCCCAGTATTCCAGCGAATCCGATACTACTGCTGACTACACGACCGAAAAGTACAGGGAG  444
                                                                                      
Sbjct  202  --------------------------------------------------------------------------  201

Query  445  AAGAGTCTCTATGGAGATGATCTGGATCCGTATTATAGAGGCAGCCACGCAGCCAAGCAAAATGGGCACGTAAT  518
                                                                                      
Sbjct  202  --------------------------------------------------------------------------  201

Query  519  GAAAATGAAGCACGGGGAGGCCTACTATTCTGAGGTGAAGCCTTTGAAATCCGATTTTGCCAGATTTTCTGCCG  592
                                                                                      
Sbjct  202  --------------------------------------------------------------------------  201

Query  593  ATTATCACTCACATTTGGACTCACTGAGCAAACCAAGTGAATACAGTGACCTCAAGTGGGAGTATCAGAGAGCC  666
                                                                                      
Sbjct  202  --------------------------------------------------------------------------  201

Query  667  TCGAGTAGCTCCCCTCTGGATTATTCATTCCAATTCACACCTTCTAGAACTGCAGGGACCAGCGGGTGCTCCAA  740
                                                                                      
Sbjct  202  --------------------------------------------------------------------------  201

Query  741  GGAGAGCCTGGCGTACAGTGAAAGTGAATGGGGACCCAGCCTGGATGACTATGACAGGAGGCCAAAGTCTTCGT  814
                                                                                      
Sbjct  202  --------------------------------------------------------------------------  201

Query  815  ACCTGAATCAGACAAGCCCTCAGCCCACCATGCGGCAGAGGTCCAGGTCAGGCTCGGGACTCCAGGAACCGATG  888
                                                                                      
Sbjct  202  --------------------------------------------------------------------------  201

Query  889  ATGCCATTTGGAGCAAGTGCATTTAAAACCCATCCCCAAGGACACTCCTACAACTCCTACACCTACCCTCGCTT  962
                                                                                      
Sbjct  202  --------------------------------------------------------------------------  201

Query  963  GTCCGAGCCCACAATGTGCATTCCAAAGGTGGATTACGATCGAGCACAGATGGTCCTCAGCCCTCCACTGTCAG  1036
                                     ||||||||||||||||||||||||||||||.||||.|||||||||||||
Sbjct  202  -------------------------AAGGTGGATTACGATCGAGCACAGATGGTCTTCAGTCCTCCACTGTCAG  250

Query 1037  GGTCTGACACCTACCCCAGGGGCCCTGCCAAACTACCTCAAAGTCAAAGCAAATCGGGCTATTCCTCAAGCAGT  1110
            ||||.|||||.||||||||.|||||..||||||||||||||||||||||||||.|.|||||.||.|||.||||.
Sbjct  251  GGTCCGACACTTACCCCAGAGGCCCCACCAAACTACCTCAAAGTCAAAGCAAAGCAGGCTACTCTTCAGGCAGC  324

Query 1111  CACCAGTACCCGTCTGGGTACCACAAAGCCACCT-TGTACCATCACCCCTCCCTGCAGAGCAGTTCGCAGTACA  1183
            |||||||||||.|||||||||||||||| ||.|| |.|||||.||.||.||||||||.|.||||||.|||||||
Sbjct  325  CACCAGTACCCTTCTGGGTACCACAAAG-CATCTCTATACCACCATCCATCCCTGCAAACCAGTTCTCAGTACA  397

Query 1184  TCTCCACGGCTTCCTACCTGAGCTCCCTCAGCCTCTCATCCAGCACCTACCCGCCGCCCAGCTGGGGCTCCTCC  1257
            |||||||.|||||.|||.|.|||||.|||||..||||.||.|||||||||||.||.||.|||||||||||||||
Sbjct  398  TCTCCACCGCTTCTTACTTAAGCTCTCTCAGTATCTCCTCGAGCACCTACCCTCCACCTAGCTGGGGCTCCTCC  471

Query 1258  TCCGACCAGCAGCCCTCCAGGGTGTCCCATGAACAGTTTCGGGCGGCCCTGCAGCTGGTGGTCAGCCCAGGAGA  1331
            ||.||||||||||||||.|||||.|||||||||||.||.||.||.||||||||.||||||||||||||||||||
Sbjct  472  TCAGACCAGCAGCCCTCAAGGGTATCCCATGAACAATTCCGAGCTGCCCTGCAACTGGTGGTCAGCCCAGGAGA  545

Query 1332  CCCCAGGGAATACTTGGCCAACTTTATCAAAATCGGGGAAGGCTCAACCGGCATCGTATGCATCGCCACCGAGA  1405
            ||||||||||||.||||..||||||||.||||||||.|||||.||.||.||||||||.|||||.||.||.||||
Sbjct  546  CCCCAGGGAATATTTGGATAACTTTATTAAAATCGGAGAAGGGTCGACAGGCATCGTGTGCATTGCAACAGAGA  619

Query 1406  AACACACAGGGAAACAAGTTGCAGTGAAGAAAATGGACCTCCGGAAGCAACAGAGACGAGAACTGCTTTTCAAT  1479
            ||||||||||.||.|||||.|||||||||||||||||||||||.|||||.||||||||.|||||.|||||.|||
Sbjct  620  AACACACAGGCAAGCAAGTGGCAGTGAAGAAAATGGACCTCCGAAAGCAGCAGAGACGGGAACTCCTTTTTAAT  693

Query 1480  GAGGTCGTGATCATGCGGGATTACCACCATGACAATGTGGTTGACATGTACAACAGCTACCTTGTCGGCGATGA  1553
            |||||||||||.|||||.|||||||||||||||||.||.||||||||||||||||||||||||||.||.|||||
Sbjct  694  GAGGTCGTGATAATGCGTGATTACCACCATGACAACGTAGTTGACATGTACAACAGCTACCTTGTTGGAGATGA  767

Query 1554  GCTCTGGGTGGTCATGGAGTTTCTAGAAGGTGGTGCCTTGACAGACATTGTGACTCACACCAGAATGAATGAAG  1627
            |||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct  768  GCTCTGGGTGGTCATGGAGTTTCTAGAAGGTGGTGCCTTGACAGACATTGTCACTCATACCAGAATGAATGAAG  841

Query 1628  AACAGATAGCTACTGTCTGCCTGTCAGTTCTGAGAGCTCTCTCCTACCTTCATAACCAAGGAGTGATTCACAGG  1701
            |.|||||||||||||||||||||||||||||||.||||||.|||||||||||||||||||||||||||||||||
Sbjct  842  AGCAGATAGCTACTGTCTGCCTGTCAGTTCTGAAAGCTCTGTCCTACCTTCATAACCAAGGAGTGATTCACAGG  915

Query 1702  GACATAAAAAGTGACTCCATCCTCCTGACAAGCGATGGCCGGATAAAGTTGTCTGATTTTGGTTTCTGTGCTCA  1775
            ||||||||.|||||||||||.||.||||||||||||||||||||||||||.|||||.|||||||||||||||||
Sbjct  916  GACATAAAGAGTGACTCCATTCTTCTGACAAGCGATGGCCGGATAAAGTTATCTGACTTTGGTTTCTGTGCTCA  989

Query 1776  AGTTTCCAAAGAGGTGCCGAAGAGGAAATCATTGGTTGGCACTCCCTACTGGATGGCCCCT-------------  1836
            ||||||||||||||||||.||||||||.|||.||||.||.||.||.|||||||||||.|||             
Sbjct  990  AGTTTCCAAAGAGGTGCCAAAGAGGAAGTCACTGGTGGGTACCCCATACTGGATGGCACCTGAGGTGATTTCCA  1063

Query 1837  -----------------GAGGTGGACATCTGGTCCCTCGGGATCATGGTGATAGAAATGATTGATGGCGAGCCC  1893
                             ||||||||||||||||||||||||||.|||||||||||.|||||||||||.||||||
Sbjct 1064  GGCTACCTTATGGGACAGAGGTGGACATCTGGTCCCTCGGGATAATGGTGATAGAGATGATTGATGGGGAGCCC  1137

Query 1894  CCCTACTTCAATGAGCCTCCCCTCCAGGCGATGCGGAGGATCCGGGACAGTTTACCTCCAAGAGTGAAGGACCT  1967
            |||||.||||||||||||||.||.|||||.|||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1138  CCCTATTTCAATGAGCCTCCTCTGCAGGCCATGAGGAGGATCCGGGACAGTTTACCTCCAAGAGTGAAGGACCT  1211

Query 1968  ACACAAGGTTTCTTCAGTGCTCCGGGGATTCCTAGA-CTTGATGTTGGTGAGGGAGCCCTCTCAGAGAGCAACA  2040
            |||||||||||||||..|||||||.||||||||||| ||| |||||||||||||||||||||||.|||||.|||
Sbjct 1212  ACACAAGGTTTCTTCCATGCTCCGAGGATTCCTAGATCTT-ATGTTGGTGAGGGAGCCCTCTCAAAGAGCCACA  1284

Query 2041  GCCCAGGAACTCCTCGGACATCCATTCTTAAAACTAGCAGGTCCACCGTCTTGCATCGTCCCCCTCATGAGACA  2114
            ||.||.||||||||.||||||||||||||||||.|.|||||||||||.||||||||.||.||.|||||||||||
Sbjct 1285  GCTCAAGAACTCCTTGGACATCCATTCTTAAAATTGGCAGGTCCACCATCTTGCATTGTTCCTCTCATGAGACA  1358

Query 2115  ATACAGGCATCAC  2127
            ||||||.||||||
Sbjct 1359  ATACAGACATCAC  1371

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.