Nucleotide Global Alignment

Description

Query:
TRCN0000488055
Subject:
XR_002957961.1
Aligned Length:
4259
Identities:
1244
Gaps:
3014

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACAGCGCGATGGCGGCGGCTCCTTTAGGCAGCTGAAAGGGGATTTAGGCCCGGAAGATCCGAGTCCATCCGCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGGGAGAGGGCAAGCGGGACCGGTAGGGGCCGGAGCAGCGGCGGCGGCGCTCGGACTGTCCCATCCGCCCCGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATTGAGGCGCTGGGAGCGGCGGGGCGACAGGAAAGCGATGGTGAAAGCGGGGCCGTGAGGGGGGCGGAGCCGGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCCGGACCCGCAGTAGCGGCAGCAGCGGCGCCGCCTCCCAGAGTTCAGACCCAGGAAGCGGCCGGGAGGGCAG  296

Query    1  -----------------------ATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGC  51
                                   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAGCGAATCGGGCCGCCGCCGCCATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGC  370

Query   52  GGCTCCTTCGGAGACATCTATCTCGGTACGGACATTGCTGCAGGAGAAGAGGTTGCCATCAAGCTTGAATGTGT  125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGCTCCTTCGGAGACATCTATCTCGGTACGGACATTGCTGCAGGAGAAGAGGTTGCCATCAAGCTTGAATGTGT  444

Query  126  CAAAACCAAACACCCTCAGCTCCACATTGAGAGCAAAATCTACAAGATGATGCAGGGAGGAGTGGGCATCCCCA  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAAAACCAAACACCCTCAGCTCCACATTGAGAGCAAAATCTACAAGATGATGCAGGGAGGAGTGGGCATCCCCA  518

Query  200  CCATCAGATGGTGCGGGGCAGAGGGGGACTACAACGTCATGGTGATGGAGCTGCTGGGGCCAAGCCTGGAGGAC  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CCATCAGATGGTGCGGGGCAGAGGGGGACTACAACGTCATGGTGATGGAGCTGCTGGGGCCAAGCCTGGAGGAC  592

Query  274  CTCTTCAACTTCTGCTCCAGGAAATTCAGCCTCAAAACCGTCCTGCTGCTTGCTGACCAAATGATCAGTCGCAT  347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTCTTCAACTTCTGCTCCAGGAAATTCAGCCTCAAAACCGTCCTGCTGCTTGCTGACCAAATGATCAGTCGCAT  666

Query  348  CGAATACATTCATTCAAAGAACTTCATCCACCGGGATGTGAAGCCAGACAACTTCCTCATGGGCCTGGGGAAGA  421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CGAATACATTCATTCAAAGAACTTCATCCACCGGGATGTGAAGCCAGACAACTTCCTCATGGGCCTGGGGAAGA  740

Query  422  AGGGCAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGATGCACGCACCCACCAGCACATC  495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGGGCAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGATGCACGCACCCACCAGCACATC  814

Query  496  CCCTATCGTGAGAACAAGAACCTCACGGGGACGGCGCGGTACGCCTCCATCAACACGCACCTTGGAATTGAACA  569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCCTATCGTGAGAACAAGAACCTCACGGGGACGGCGCGGTACGCCTCCATCAACACGCACCTTGGAATTGAACA  888

Query  570  ATCCCGAAGAGATGACTTGGAGTCTCTGGGCTACGTGCTAATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGG  643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATCCCGAAGAGATGACTTGGAGTCTCTGGGCTACGTGCTAATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGG  962

Query  644  GGCTGAAGGCTGCCACCAAGAGACAGAAATACGAAAGGATTAGCGAGAAGAAAATGTCCACCCCCATCGAAGTG  717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGCTGAAGGCTGCCACCAAGAGACAGAAATACGAAAGGATTAGCGAGAAGAAAATGTCCACCCCCATCGAAGTG  1036

Query  718  TTGTGTAAAGGCTACCCTTCCGAATTTGCCACATACCTGAATTTCTGCCGTTCCTTGCGTTTTGACGACAAGCC  791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTGTGTAAAGGCTACCCTTCCGAATTTGCCACATACCTGAATTTCTGCCGTTCCTTGCGTTTTGACGACAAGCC  1110

Query  792  TGACTACTCGTACCTGCGGCAGCTTTTCCGGAATCTGTTCCATCGCCAGGGCTTCTCCTATGACTACGTGTTCG  865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGACTACTCGTACCTGCGGCAGCTTTTCCGGAATCTGTTCCATCGCCAGGGCTTCTCCTATGACTACGTGTTCG  1184

Query  866  ACTGGAACATGCTCAAATTT------------------------------------------------------  885
            ||||||||||||||||||||                                                      
Sbjct 1185  ACTGGAACATGCTCAAATTTGTTGCTGTCTCGGCTTAAAATCTGACCTCCCCACCCCCGTGCATCTGGATAGTG  1258

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1259  CAGCACAGATCCGGCTGCCGGCTGCTGGCCACGCCACCACACCTGCACAGGCTGTTGGAGGCTGCAGGGTCCGG  1332

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1333  ACCCTGAGTGTACTCCTCGTCCGACCAAACGCTCTCATCCCCACCCCGCTTTCCTCCCCAGCTGTCACCATTTG  1406

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1407  GGGCCTGTCTTTGGCCTCCGATGGTTCCTGTCCCTCTCCTCTTTCTGCACGTGTTAGTGAGCATGTTCACAGAG  1480

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1481  CAGCAGGGGGTAGCTGCTGCCCATTTGGAAGTTTAAGGAAGTTCTGAGCCCACAGGGAGATGCCATGGCGAGTG  1554

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1555  GGGTTTTTTCGATTGTTGGGGGAGCTGAGAGGCCTGGCTCTGACCCCTTGTGGGGATGATGCTGTCATCCCATG  1628

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1629  AGGAGAAACGTGCAGCCTGTGGGGGGCTTTGCAGGCAGTCTCGTCCCAGTGCCCTTTGGTAGGTATTTTCTCAC  1702

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1703  GTGGCCGGGGCAGCCTAGGACCTAGGGTTGCTTTCTGCCAAAGCTGGTTCCATTCCGGCCTCACCTCCTGCCTC  1776

Query  886  -----GGTGCCAGCCGGGCCGCCGATGACGCCGAGCGGGAGCGCAGGGACCGAGAGGAGCGGCTGAGACACTCG  954
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CTCAGGGTGCCAGCCGGGCCGCCGATGACGCCGAGCGGGAGCGCAGGGACCGAGAGGAGCGGCTGAGACACTCG  1850

Query  955  CGGAACCCGGCTACCCGCGGCCTCCCTTCCACAGCCTCCGGCCGCCTGCGGGGGACGCAGGAAGTGGCTCCCCC  1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CGGAACCCGGCTACCCGCGGCCTCCCTTCCACAGCCTCCGGCCGCCTGCGGGGGACGCAGGAAGTGGCTCCCCC  1924

Query 1029  CACACCCCTCACCCCTACCTCACACACGGCTAACACCTCCCCCCGGCCTGTCTCCGGCATGGAGAGAGAGCGGA  1102
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1925  CACACCCCTCACCCCTACCTCACACACGGCTAACACCTCCCCCCGGCCCGTCTCCGGCATGGAGAGAGAGCGGA  1998

Query 1103  AAGTGAGTATGCGGCTGCACCGCGGGGCCCCCGTCAACATCTCCTCGTCCGACCTCACAGGCCGACAAGATACC  1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AAGTGAGTATGCGGCTGCACCGCGGGGCCCCCGTCAACATCTCCTCGTCCGACCTCACAGGCCGACAAGATACC  2072

Query 1177  TCTCGCATGTCCACCTCACAGATTCCTGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCACCGA-----  1245
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct 2073  TCTCGCATGTCCACCTCACAGATTCCTGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCACCGATGAGA  2146

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2147  ACTCTCCTTATTGCTGTGAAGGGCAGACAATGCATGGCTGATCTACTCTGTTACCAATGGCTTTACTAGTGACA  2220

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2221  CGTCCCCCGGTCTAGGATCGAAATGTTAACACCGGGAGCTCTCCAGGCCACTCACCCAGCGACGCTCGTGGGGG  2294

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2295  AAACATACTAAACGGACAGACTCCAAGAGCTGCCACCGCTGGGGCTGCACTGCGGCCCCCCACGTGAACTCGGT  2368

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2369  TGTAACGGGGCTGGGAAGAAAAGCAGAGAGAGAATTGCAGAGAATCAGACTCCTTTTCCAGGGCCTCAGCTCCC  2442

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2443  TCCAGTGGTGGCCGCCCTGTACTCCCTGACGATTCCACTGTAACTACCAATCTTCTACTTGGTTAAGACAGTTT  2516

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2517  TGTATCATTTTGCTAAAAATTATTGGCTTAAATCTGTGTAAAGAAAATCTGTCTTTTTATTGTTTCTTGTCTGT  2590

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2591  TTTTGCAGTCTTACAAAAAAAATGTTGACTAAGGAATTCTGAGACAGGCTGGCTTGGAGTTAGTGTATGAGGTG  2664

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2665  GAGTCGGGCAGGGAGAAGGTGCAGGTGGATCTCAAGGGTGTGTGCTGTGTTTGTTTTGCAGTGTTTTATTGTCC  2738

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2739  GCTTTGGAGAGGAGATTTCTCATCAAAAGTCCGTGGTGTGTGTGTGTGCCCGTGTGTGGTGGGACCTCTTCAAC  2812

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2813  CTGATTTTGGCGTCTCACCCTCCCTCCTCCCGTAATTGACATGCCTGCTGTCAGGAACTCTTGAGGCCCTCGGA  2886

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2887  GAGCAGTTAGGGACCGCAGGCTGCCGCGGGGCAGGGGTGCAGTGGGTGTTACCAGGCAAAGCACTGCGCGCTTC  2960

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 2961  TTCCCCAGGAGGTGGGCAGGCAGCTGAGAGCTTGGAAGCAGAGGCTTTGAGACCCTAGCAGGACAATTGGGAGT  3034

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3035  CCCAGGATTCAAGGTGGAAGATGCGTTTCTGGTCCCTTGGGAGAGGACTGTGAACCGAGAGGTGGTTACTGTAG  3108

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3109  TGTTTGTTGCCTTGCTGCCTTTGCACTCAGTCCATTTTCTCAGCACTCAATGCTCCTGTGCGGATTGGCACTCC  3182

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3183  GTCTGTATGAATGCCTGTGCTTAAAACCAGGAGCGGGGCTGTCCTTGCCACGTGCCAAGACTAGCTCAGAAAAG  3256

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3257  CCGGCAGGCCAGAAGGACCCACCCTGAGGTGCCAAGGAGCAGGTGACTCTCCCAACCGGACCCAGAACCTTCAC  3330

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3331  GGCCAGAAAGTAGAGTCTGCGCTGTGACCTTCTGTTGGGCGCGTGTCTGTTGGTCAGAAGTGAAGCAGCGTGCG  3404

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3405  TGGGGCCGAGTCCCACCAGAAGGCAGGTGGCCTCCGTGAGCTGGTGCTGCCCCAGGCTCCATGCTGCTGTGCCC  3478

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3479  TGAGGTTCCCAGGATGCCTTCTCGCCTCTCACTCCGCAGCACTTGGGCGGTAGCCAGTGGCCATGTGCTCCCAA  3552

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3553  CCCCAATGCGCAGGGCAGTCTGTGTTCGTGGGCACTTCGGCTGGACCCCATCACGATGGACGATGTTCCCTTTG  3626

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3627  GACTCTAGGGCTTCGAAGGTGTGCACCTTGGTTCTCCCTTCTCCTCCCCAGAGTTCCCCGGATGCCATAACTGG  3700

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3701  CTGGCGTCCCAGAACACAGTTGTTCACCCCCCCACCAGCTGGCTGGCCGTCTGCCTGAGCCCATGGATGCTTTC  3774

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3775  TCAATCCTAGGCTGGTTACTGTGTAAGCGTTTTGGAGTACGGGGCCTTGAGCGGGTGGGAGCTGTGTGTTGAAG  3848

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3849  TACAGAGGGAGGTTGGGGTGGGTCAGAGCCGAGTTAAGAGATTTTCTTTGTTGCTGGACCCCTTCTTGAAGGTA  3922

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3923  GACGTCCCCCACCCGGAGAGACGTCGCGCTGTGGCCTGAAGTGGCGCAAGCTTGCTTTGTAAATATCTGTGGTC  3996

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 3997  CCGATGTAGTGCCCAGAACGTTTGTGCGAGGCAGCTCTGCGCCCGGGTTCCAGCCCGAGCCTCGCCGGGTCGCG  4070

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 4071  TCTTCGGAGTGCTTGTGACAGTCCTTGCCCAGTATCTAGTCCCCGTCGCCCCGTGCAGGAGACGTAGGTAGGAC  4144

Query 1246  --------------------------------------------------------------------------  1245
                                                                                      
Sbjct 4145  GTCGTGTCAGCTGTGCACTGACGGCCAGTCTCCGAGCTGTGCGTTTGTATCGCCACTGTATTTGTGTACTTTAA  4218

Query 1246  -----------------------------------------  1245
                                                     
Sbjct 4219  CAATCGTGTAAATAATAAATTCATAATGACTTCTACCTTTC  4259

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