Nucleotide Global Alignment

Description

Query:
TRCN0000488275
Subject:
XR_001745476.1
Aligned Length:
2445
Identities:
1048
Gaps:
1353

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCAGCGAGAGCTGCAAAGTTCCTTGCTATTCTTTTCTGGTGTCGGGGAGCTGAATATTAAAAGGGTGATTGTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGTTACCGGTTATCTGCATTTTTTTTTCTTTTCTTATTTTGACTCTTTTTAAAAAATGCAGGTAAAGTGACAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGTTCAGGAGCTTAAAGACATCAGTGGTGGAGGGGTGAGTCAGCGGGTGCAAAAGGACAAGGATTTGGTGCCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGAGACACGGTCCCCTCTCCGCCTCCAGAGAAGAGCAGGCAGGCAGCTCCCGGGACCGAAGCCGGGTCCACATC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCCGCGCGCGAGCTGGTGGCTCAGCAGCGGCGCTTCAGGTGGACGCGGTCAAACGATGCCCCGCAGCCTCCTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGTCTCAGCACATATTCCACACCTACGTCCCCTGACCTGTGCTCCTAGAAGCTGGAGAGAGCAGGAGCCTTCGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGGGGCAGCTCAAAATGTAGGTAACTGCGGGCCAGGAGCAGCGCCCAACCTGTAGCGCTGCGCTACCCAACCAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGGTCCCTGCCTTTGAGCGTCGACGGCTGATCTTTTGGTTTGAGGGAGAGACTGGCGCTGGAGTTTTGAATTCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAATCATGTGCAGAATGCTGAATCTTCCCCCAGCCAGGACGAATAAGACAGCGCGGAAAAGCAGATTCTCGTAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTCTGGAATTGCATGTTGCAAGGAGTCTCCTGGATCTTCGCACCCAGCTTCGGGTAGGGAGGGAGTCCGGGTCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGGGCTAGGCCAGCCCGGCAGGTGGAGAGGGTCCCCGGCAGCCCCGCGCGCCCCTGGCCATGTCTTTAATGCCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGCCCCTTCATGTGGCCTTCTGAGGGTTCCCAGGGCTGGCCAGGGTTGTTTCCCACCCGCGCGCGCGCTCTCAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCCCAGCCAAACCCACCTGGCAGGGCTCCCTCCAGCCGAGACCTTTTGATTCCCGGCTCCCGCGCTCCCGCCTC  962

Query    1  -----------------------------------------------------------ATGGTGTTTCTCTCG  15
                                                                       |||||||||||||||
Sbjct  963  CGCGCCAGCCCGGGAGGTGGCCCTGGACAGCCGGACCTCGCCCGGCCCCGGCTGGGACCATGGTGTTTCTCTCG  1036

Query   16  GGAAATGCTTCCGACAGCTCCAACTGCACCCAACCGCCGGCACCGGTGAACATTTCCAAGGCCATTCTGCTCGG  89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GGAAATGCTTCCGACAGCTCCAACTGCACCCAACCGCCGGCACCGGTGAACATTTCCAAGGCCATTCTGCTCGG  1110

Query   90  GGTGATCTTGGGGGGCCTCATTCTTTTCGGGGTGCTGGGTAACATCCTAGTGATCCTCTCCGTAGCCTGTCACC  163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GGTGATCTTGGGGGGCCTCATTCTTTTCGGGGTGCTGGGTAACATCCTAGTGATCCTCTCCGTAGCCTGTCACC  1184

Query  164  GACACCTGCACTCAGTCACGCACTACTACATCGTCAACCTGGCGGTGGCCGACCTCCTGCTCACCTCCACGGTG  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GACACCTGCACTCAGTCACGCACTACTACATCGTCAACCTGGCGGTGGCCGACCTCCTGCTCACCTCCACGGTG  1258

Query  238  CTGCCCTTCTCCGCCATCTTCGAGGTCCTAGGCTACTGGGCCTTCGGCAGGGTCTTCTGCAACATCTGGGCGGC  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CTGCCCTTCTCCGCCATCTTCGAGGTCCTAGGCTACTGGGCCTTCGGCAGGGTCTTCTGCAACATCTGGGCGGC  1332

Query  312  AGTGGATGTGCTGTGCTGCACCGCGTCCATCATGGGCCTCTGCATCATCTCCATCGACCGCTACATCGGCGTGA  385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGTGGATGTGCTGTGCTGCACCGCGTCCATCATGGGCCTCTGCATCATCTCCATCGACCGCTACATCGGCGTGA  1406

Query  386  GCTACCCGCTGCGCTACCCAACCATCGTCACCCAGAGGAGGGGTCTCATGGCTCTGCTCTGCGTCTGGGCACTC  459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GCTACCCGCTGCGCTACCCAACCATCGTCACCCAGAGGAGGGGTCTCATGGCTCTGCTCTGCGTCTGGGCACTC  1480

Query  460  TCCCTGGTCATATCCATTGGACCCCTGTTCGGCTGGAGGCAGCCGGCCCCCGAGGACGAGACCATCTGCCAGAT  533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TCCCTGGTCATATCCATTGGACCCCTGTTCGGCTGGAGGCAGCCGGCCCCCGAGGACGAGACCATCTGCCAGAT  1554

Query  534  CAACGAGGAGCCGGGCTACGTGCTCTTCTCAGCGCTGGGCTCCTTCTACCTGCCTCTGGCCATCATCCTGGTCA  607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CAACGAGGAGCCGGGCTACGTGCTCTTCTCAGCGCTGGGCTCCTTCTACCTGCCTCTGGCCATCATCCTGGTCA  1628

Query  608  TGTACTGCCGCGTCTACGTGGTGGCCAAGAGGGAGAGCCGGGGCCTCAAGTCTGGCCTCAAGACCGACAAGTCG  681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TGTACTGCCGCGTCTACGTGGTGGCCAAGAGGGAGAGCCGGGGCCTCAAGTCTGGCCTCAAGACCGACAAGTCG  1702

Query  682  GACTCGGAGCAAGTGACGCTCCGCATCCATCGGAAAAACGCCCCGGCAGGAGGCAGCGGGATGGCCAGCGCCAA  755
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GACTCGGAGCAAGTGACGCTCCGCATCCATCGGAAAAACGCCCCGGCAGGAGGCAGCGGGATGGCCAGCGCCAA  1776

Query  756  GACCAAGACGCACTTCTCAGTGAGGCTCCTCAAGTTCTCCCGGGAGAAGAAAGCGGCCAAAACGCTGGGCATCG  829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GACCAAGACGCACTTCTCAGTGAGGCTCCTCAAGTTCTCCCGGGAGAAGAAAGCGGCCAAAACGCTGGGCATCG  1850

Query  830  TGGTCGGCTGCTTCGTCCTCTGCTGGCTGCCTTTTTTCTTAGTCATGCCCATTGGGTCTTTCTTCCCTGATTTC  903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|.|.|.|          
Sbjct 1851  TGGTCGGCTGCTTCGTCCTCTGCTGGCTGCCTTTTTTCTTAGTCATGCCCATTGGGACATACAT----------  1914

Query  904  AAGCCCTCTGAAA---------CAGTTTT-TAAAATAGTATTTTGGC--TCGGATATCTAAACAGCTGCATCAA  965
                  |||.|||         |.||||| .|.||.||      |||  ||||           .|||||    
Sbjct 1915  ------TCTTAAATATGACGTGCTGTTTTGGAGAAAAG------GGCTGTCGG-----------TCTGCA----  1961

Query  966  CCCCATCATATACCCATGCTCC-----AGCCAAGAGTTCAAAAAGGCCTTTCAGAATGTCTTGAGAATCCAGTG  1034
                         |.|.|||.|     ||..|||||.|.|||||   ||               |||.||||  
Sbjct 1962  -------------CTAGGCTGCGGGAGAGGAAAGAGATTAAAAA---CT---------------GAAACCAG--  2002

Query 1035  TCTCCGCAGAAAGCAGTCTTCCAAACATGCCCTGGGCTACACCCTGCACCCGCCCAGCCAGGCCGTG-GAAGGG  1107
                .||||..|..||                ||.||||     |.||      ||||       || ||||.|
Sbjct 2003  ----GGCAGGGATGAG----------------TGTGCTA-----TCCA------CAGC-------TGAGAAGTG  2038

Query 1108  CAACACAAGGACATGGTGCGCATCCCCGTGGGATCA-AGAGA--GACCTTCTACAGGATCTCCAAGACGGAT--  1176
            .|||||    .||||.|                |.| ||.||  ||||     |||||     ||     ||  
Sbjct 2039  AAACAC----CCATGTT----------------TAATAGGGACTGACC-----CAGGA-----AA-----ATCA  2077

Query 1177  GGCGTTTGTGAATGGAAATTTTTCTC---TTCCATGCCCCGTGGATCTGCCAGGATTACAGTGTCCAAAGACCA  1247
            || ||.|           ||.|||.|   ||.||.||||..||.|            |||||.|..||     |
Sbjct 2078  GG-GTCT-----------TTCTTCCCTGATTTCAAGCCCTCTGAA------------ACAGTTTTTAA-----A  2122

Query 1248  ATCCTCCTGTACCACAGCCCGGGTGAGAAGTAAAAGCTTTTTGCAGGTCTGCTGCTGTGTAGGGCCCTCAACCC  1321
            ||                          ||||      |||||  |.||.|                       
Sbjct 2123  AT--------------------------AGTA------TTTTG--GCTCGG-----------------------  2139

Query 1322  CCAGCCTTGACAAGAACCATCAAGTTCCAACCATTAAGGTCCACACCATCTCCCTCAGTGAGAACGGGGAGGAA  1395
                                                                                      
Sbjct 2140  --------------------------------------------------------------------------  2139

Query 1396  GTC  1398
               
Sbjct 2140  ---  2139

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