Nucleotide Global Alignment

Description

Query:
TRCN0000488904
Subject:
XM_017318066.1
Aligned Length:
1780
Identities:
1322
Gaps:
263

Alignment

Query    1  ATGGAGCTGGAAAACATCGTGGCCAACACGGTCTTGCTGAAAGCCAGGGAAGGGGGCGGAGGAAAGCGCAAAGG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GAAAAGCAAGAAGTGGAAAGAAATCCTGAAGTTCCCTCACATTAGCCAGTGTGAAGACCTCCGAAGGACCATAG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ACAGAGATTACTGCAGTTTATGTGACAAGCAGCCAATCGGGAGGCTG---CTTTTCCGGCAGTTTTG-TGAAAC  218
                               ||||             ||     .|||   ||.||||     |.||| |.||  
Sbjct    1  -------------------ATGT-------------TC-----TCTGTCTCTCTTCC-----TATTGCTCAA--  30

Query  219  CAGGCCTGGGCTGGAGTGTTACATTCAG-TTCCTGGACTCCGTGGCAGAATATGAAGTTACTCCAGATGAAAAA  291
                         ||||.||.|||.|.| ||.|||                 |||||     |||..|||    
Sbjct   31  -------------GAGTCTTTCATCCTGATTTCTG-----------------TGAAG-----CCACTTGA----  65

Query  292  CTGGGAGAGAAAGGGAAGGAAATTATGACCAAGT-ACCTC---ACCCCAAAGTCCCCTGTTTTCATAGCCCAAG  361
                     ||||..|||.||||         || |.|||   |.|||   ||||||.||.|||||.|||||||
Sbjct   66  ---------AAAGCCAAGAAAAT---------GTGATCTCTTGAGCCC---GTCCCCAGTCTTCATTGCCCAAG  118

Query  362  TTGGCCAAGACCTGGTCTCCCAGACGGAGGAGAAGCTCCTACAGAAGCCGTGCAAAGAACTCTTTTCTGCCTGT  435
            ||||.||.|||||||||||||||||.|||.||||||||||.||||..||.||||||||||||||.|||||.|||
Sbjct  119  TTGGACAGGACCTGGTCTCCCAGACAGAGAAGAAGCTCCTGCAGAGCCCCTGCAAAGAACTCTTCTCTGCTTGT  192

Query  436  GCACAGTCTGTCCACGAGTACCTGAGGGGAGAACCATTCCACGAATATCTGGACAGCATGTTTTTTGACCGCTT  509
            ||.|||||||||||.||.|||.|||.||||||.||.||||||||.||.|||||.|||||||.|||||||||.||
Sbjct  193  GCTCAGTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTT  266

Query  510  TCTCCAGTGGAAGTGGTTGGAAAGGCAACCGGTGACCAAAAACACTTTCAGGCAGTATCGAGTGCTAGGAAAAG  583
            |||.||||||||.|||||.|||||.|||||.||||||||||||||||||.|||||||.||||||||.||.||||
Sbjct  267  TCTGCAGTGGAAATGGTTAGAAAGACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAG  340

Query  584  GGGGCTTCGGGGAGGTCTGTGCCTGCCAGGTTCGGGCCACGGGTAAAATGTATGCCTGCAAGCGCTTGGAGAAG  657
            |||||||.||.|||||||||||||||||||||||||||||.||||||||||||||.||.||.|||||.||||||
Sbjct  341  GGGGCTTTGGAGAGGTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCTTAGAGAAG  414

Query  658  AAGAGGATCAAAAAGAGGAAAGGGGAGTCCATGGCCCTCAATGAGAAGCAGATCCTCGAGAAGGTCAACAGTCA  731
            |||||||||||||||||||||||.||.||||||||.|||||.||.||||||||.||.||||||||||||||.||
Sbjct  415  AAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAACGAAAAGCAGATTCTTGAGAAGGTCAACAGCCA  488

Query  732  GTTTGTGGTCAACCTGGCCTATGCCTACGAGACCAAGGATGCACTGTGCTTGGTCCTGACCATCATGAATGGGG  805
            |||||||||||||||||||||||||||.||.|||||.||||||||.|||.||||.||||||||.||||||||.|
Sbjct  489  GTTTGTGGTCAACCTGGCCTATGCCTATGAAACCAAAGATGCACTATGCCTGGTTCTGACCATTATGAATGGTG  562

Query  806  GTGACCTGAAGTTCCACATCTACAACATGGGCAACCCTGGCTTCGAGGAGGAGCGGGCCTTGTTTTATGCGGCA  879
            |||||||||||||.|||||||||||.|||||.||.||||||||.|||||.|||||.|||||.||||||||.||.
Sbjct  563  GTGACCTGAAGTTTCACATCTACAATATGGGGAATCCTGGCTTTGAGGAAGAGCGAGCCTTATTTTATGCAGCT  636

Query  880  GAGATCCTCTGCGGCTTAGAAGACCTCCACCGTGAGAACACCGTCTACCGAGATCTGAAACCTGAAAACATCCT  953
            |||||||||||.|||.||||||||.|.||||||||||||||.|||||..|||||||.|||||.|||||||||.|
Sbjct  637  GAGATCCTCTGTGGCCTAGAAGACTTACACCGTGAGAACACTGTCTATAGAGATCTAAAACCCGAAAACATCTT  710

Query  954  GTTAGATGATTATGGCCACATTAGGATCTCAGACCTGGGCTTGGCTGTGAAGATCCCCGAGGGAGACCTGATCC  1027
            |.|.|||||||||||||||||.||||||||||||||.||..||||.|||||||||||||||||||||||.||||
Sbjct  711  GCTGGATGATTATGGCCACATAAGGATCTCAGACCTCGGACTGGCCGTGAAGATCCCCGAGGGAGACCTTATCC  784

Query 1028  GCGGCCGGGTGGGCACTGTTGGCTACATGGCTCCAGAGGTCCTGAACAACCAGAGGTACGGCCTGAGCCCCGAC  1101
            |.||||||||.||||||||||||||||||||.|||||.||.||||||||||||.|.||.||.||||||||.|||
Sbjct  785  GTGGCCGGGTAGGCACTGTTGGCTACATGGCCCCAGAAGTTCTGAACAACCAGCGATATGGACTGAGCCCTGAC  858

Query 1102  TACTGGGGCCTTGGCTGCCTCATCTATGAGATGATCGAGGGCCAGTCGCCGTTCCGCGGCCGCAAGGAGAAGGT  1175
            |||||||||||.|||||||||||||||||||||||.||.||||||||.||.||.||.||.||||||||||||||
Sbjct  859  TACTGGGGCCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAGTCACCATTTCGAGGTCGCAAGGAGAAGGT  932

Query 1176  GAAGCGGGAGGAGGTGGACCGCCGGGTCCTGGAGACGGAGGAGGTGTACTCCCACAAGTTCTCCGAGGAGGCCA  1249
            .||||||||.||||||||.||||||||.||||||||.|||||.|||||.|||..|||||||||.||.|||||||
Sbjct  933  TAAGCGGGAAGAGGTGGATCGCCGGGTGCTGGAGACTGAGGAAGTGTATTCCTCCAAGTTCTCTGAAGAGGCCA  1006

Query 1250  AGTCCATCTGCAAGATGCTGCTCACGAAAGATGCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCTGCAGAG  1323
            |||||||||||||.|||||||||||.|||||..||||||||||||||||||||||||||||||||||.||.|||
Sbjct 1007  AGTCCATCTGCAACATGCTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAG  1080

Query 1324  GTCAAGAGACACCCCTTCTTCAGGAACATGAACTTCAAGCGCTTAGAAGCCGGGATGTTGGACCCTCCCTTCGT  1397
            ||||||||.|||||.||||||||||||||||||||.||||||.|.||.||.|||||||||||||||||||||||
Sbjct 1081  GTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGT  1154

Query 1398  TCCAGACCCCCGCGCTGTGTACTGTAAGGACGTGCTGGACATCGAGCAGTTCTCCACTGTGAAGGGCGTCAATC  1471
            ||||||.|||||.|||||.|||||.|||||.|||||||||||.||||||||||||||||||||.||.|||||.|
Sbjct 1155  TCCAGATCCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACC  1228

Query 1472  TGGACCACACAGACGACGACTTCTACTCCAAGTTCTCCACGGGCTCTGTGTCCATCCCATGGCAAAACGAGATG  1545
            |||||||.||.|||||.||.||.|||||.||||||||.||.|||||||||.|.||.|||||||||||.||||||
Sbjct 1229  TGGACCATACGGACGATGATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAGATG  1302

Query 1546  ATAGAAACAGAATGCTTTAAGGAGCTGAACGTGTTTGGACCTAATGGTACCCTCCCGCCAGATCTGAACAGAAA  1619
            ||||||||||||||.||.|||||||||||.|||||.||||||||.|||||||||.|.|||||.||||||||||.
Sbjct 1303  ATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAG  1376

Query 1620  CCACCCTCCGGAACCGCCCAAGAAAGGGCTGCTCCAGAGACTCTTCAAGCGGCAGCATCAGAACAATTCCAAGA  1693
            .||.|||||.||||||||.||||||||||||.||||.||||||||||.|||.||||||||.|.|||||||||||
Sbjct 1377  TCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAGCATCAAAGCAATTCCAAGA  1450

Query 1694  GTTCGCCCAGCTCC-AAGACCAGTTTTAACCACCACATAAACTCAAACCATGTCAGCTCGAACTCCACCGGAAG  1766
            ||||.||.| |||| ||||||||||.||||||||..|||||.||||||||..|||..||.||||||||.|||||
Sbjct 1451  GTTCACCTA-CTCCTAAGACCAGTTGTAACCACCGAATAAATTCAAACCACATCAATTCAAACTCCACTGGAAG  1523

Query 1767  CAGC  1770
            ||||
Sbjct 1524  CAGC  1527

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