Nucleotide Global Alignment

Description

Query:
TRCN0000489302
Subject:
XM_006505733.3
Aligned Length:
2373
Identities:
1655
Gaps:
486

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGGTTCTGTCTCCTCCGTGCTGGCGCGGTCCCGCAACACCGTCGTGCAGCCGGGATCGTCGCCGCCGCATCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGAAGTGCCGCTCGCTGCTCCCGCGTCTCTCAAAGACTCTAGAACCCAGCGTCGGGTACTCGGGCATCAAGGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTTCAGACCTTCCCCAGCCTGGGAACCGCCGCCGGCCAAGCACAGCCAGCAGGAGCTTCCAAAGTTGGAGAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCGGAGCTGTCCCCCGTGCGGAGGCGTTTGCCAGCTATGTCCCAGTCCTCCCCCAGCGACAGCCCAGGAGAGAC  296

Query    1  --------------------------------ATGGAGTCGCC------AACCA---------AGGAGA-----  22
                                            |...||.||||      ||.||         ||||||     
Sbjct  297  TGGCACTGGGAAGACAGAAGAGTTGAACACCCAGACAGACGCCACAGAAAAACAGCCAGCTGCAGGAGAACAAG  370

Query   23  TTG-----------------AAGAAT----------TTG------------------------AGA--------  37
            |||                 ||||||          |||                        |||        
Sbjct  371  TTGCAAATGAAGCAGGAGACAAGAATGCCAGACCACTTGCTCGCTTCTCCCGGTCTAAGTCACAGAACTGCCTG  444

Query   38  -GCAACTCTCT-----------------GAAATA-----------------CCTGCAA----CCGGAACA---G  69
             |.|||||.||                 |.||||                 ||..|||    ||.|.|||   |
Sbjct  445  TGGAACTCCCTCATTGATGGGCTCACTGGGAATATTAAGGAGAAACCACGGCCAACAATTGTCCAGGACACGCG  518

Query   70  ATC-----GAGAAAATCTGGC-------TTCGGCTCCGCGGGCTGAG----GAAATAT-----AAGAAAACGTC  122
            |.|     .|||||.||||||       || |.|.|.||.||.| ||    |||...|     ||||.|.|.|.
Sbjct  519  ACCCCCAGAAGAAATTCTGGCAGATGAGTT-GCCACAGCTGGAT-AGCCCAGAAGCTTTGGTGAAGACATCTTT  590

Query  123  CCAGAGATTACGGTCTTTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTAAGAAGAATTTGG  196
            |   ||.|||||||||||||||||.||||||||..||||.||.||.||.||||||||.||||||||||||.|||
Sbjct  591  C---AGGTTACGGTCTTTGGTCAAGCAATTAGAACGAGGAGAGGCCTCTGTGGTAGACCTTAAGAAGAATCTGG  661

Query  197  AATATGCAGCCACAGTGCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACAGAGGATGAGCTC  270
            ||||||||||||||||||||||||||||.||||||||||||||||||.||||.||||||||||||||||||||.
Sbjct  662  AATATGCAGCCACAGTGCTTGAATCTGTATATATTGATGAAACAAGGCGACTGCTGGATACAGAGGATGAGCTT  735

Query  271  AGTGACATTCAGTCAGATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCACGCGGCAGATGGG  344
            |||||||||||.|||||||||||||||||.||.||.||.||.||||||||||||||||||||.|||||||||||
Sbjct  736  AGTGACATTCAATCAGATGCTGTGCCTTCAGAAGTTCGGGATTGGCTGGCCTCCACCTTCACACGGCAGATGGG  809

Query  345  GATGATGCTCAGGAGGAGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGGCTGGGATATTTG  418
            |||||||||.|||||.||.||.|||||||||.||||||||||||||||.||.||.|||||.|||||||||||||
Sbjct  810  GATGATGCTTAGGAGAAGTGATGAGAAGCCCAGGTTCAAGAGCATCGTCCATGCGGTGCAAGCTGGGATATTTG  883

Query  419  TGGAGAGAATGTATAGACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATTGAGGCATTAAAG  492
            ||||.||||||||.|||||||||||||||||||||||.||||||||||||||.|||||.||.||.|||||.|||
Sbjct  884  TGGAAAGAATGTACAGACGGACATCAAACATGGTTGGGCTGAGCTATCCACCGGCTGTAATCGATGCATTGAAG  957

Query  493  GATGTGGACAAGTGGTCATTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAAATTTATTTT  566
            ||||||||.|.||||||.||.||.||||||||||||||||||||||||||.||||||||||||||.||.|||||
Sbjct  958  GATGTGGATACGTGGTCCTTCGATGTCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCACTGAAGTTCATTTT  1031

Query  567  CTATGAACTACTCACACGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCTCATTTGTGG  640
            |||||||.||||||||||||||||.||||||||||||||.|||||.||.|||||||||||||||||||||||||
Sbjct 1032  CTATGAATTACTCACACGTTATGACCTGATCAGCCGTTTTAAGATACCGATTTCTGCACTTGTCTCATTTGTGG  1105

Query  641  AGGCCCTGGAAGTGGGATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCCGATGTTACACAG  714
            |||||||.||||||||.||||||||||||||||||||||||||||||.|.|||||.||.||.||.||.||||||
Sbjct 1106  AGGCCCTCGAAGTGGGTTACAGCAAGCACAAAAATCCTTACCATAACCTGATGCATGCAGCTGACGTCACACAG  1179

Query  715  ACAGTGCATTACCTCCTCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGCTATAATCTT  788
            ||.||||||||||||||.||||||||||||||.||.|||||||||||.|||||||||||||||||.||||||||
Sbjct 1180  ACTGTGCATTACCTCCTTTATAAGACAGGAGTAGCAAACTGGCTGACAGAGCTGGAGATCTTTGCAATAATCTT  1253

Query  789  CTCAGCTGCCATCCATGACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTCGGTCTGATCCAG  862
            .||.|||||||||||||||||.||.|||||.|||||.||.||||||||||||||||||||||||||.|||||||
Sbjct 1254  TTCGGCTGCCATCCATGACTATGAACATACTGGAACTACAAACAATTTCCACATTCAGACTCGGTCAGATCCAG  1327

Query  863  CTATTCTGTATAATGACAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTGCAAGATGAC  936
            ||||.|||||.||||||||||||||.||||||||.|||||..|.||||||||.||.|||||||||||.||.|||
Sbjct 1328  CTATCCTGTACAATGACAGATCTGTCCTGGAGAACCACCACCTGAGTGCAGCCTACCGCCTTCTGCAGGAAGAC  1401

Query  937  GAGGAAATGAATATTTTGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAATTGAAATGGT  1010
            ||.||.|||||||||.||.|||||||||||||||||||||||||||||||||||||.|||||.|||||.|||||
Sbjct 1402  GAAGAGATGAATATTCTGGTTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTTATTGAGATGGT  1475

Query 1011  GATGGCCACAGATATGTCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGCCAGAAGCCA  1084
            .|||||||||||||||||.|||||.|||||.|||||||||||.||||||||.||.||||||||.||||||||.|
Sbjct 1476  AATGGCCACAGATATGTCCTGTCATTTCCAGCAAATCAAAGCCATGAAGACAGCCCTGCAGCAACCAGAAGCAA  1549

Query 1085  TTGAAAAGCCAAAAGCCTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCATGGGACCTC  1158
            ||||.|||||.||||||||||||||.|||.|.||.||||||||.||.||.|||||.||.||||||||||||||.
Sbjct 1550  TTGAGAAGCCGAAAGCCTTATCCCTCATGTTACACACAGCAGACATCAGTCATCCTGCGAAAGCATGGGACCTG  1623

Query 1159  CATCATCGCTGGACAATGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCC  1232
            ||.||.||||||||.|||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1624  CACCACCGCTGGACCATGTCTCTCCTGGAGGAGTTCTTTAGACAGGGTGACAGAGAAGCAGAGCTGGGGCTGCC  1697

Query 1233  TTTTTCTCCTCTGTGTGACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTGATTTCATCGTGG  1306
            .|||||||||||.||||||.|||||||.||.||||||||||||||||||||.|||||.|||||.|||||.||||
Sbjct 1698  ATTTTCTCCTCTTTGTGACAGAAAGTCAACCATGGTTGCTCAGTCACAAGTGGGTTTTATTGACTTCATTGTGG  1771

Query 1307  AACCCACCTTCACTGTGCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCTCAAACT  1380
            |.|||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.||||.|||.||.|||
Sbjct 1772  AGCCCACCTTCACTGTGCTCACGGACATGACCGAGAAGATTGTGAGTCCATTAATTGACGAAAGCTCCCAGACT  1845

Query 1381  GGTGGGACAGGACAGAGGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATCAGGTGTCAAGAC  1454
            |||||||||||.||||||.|.||.||||||||.|||||||.|||.||||||||.||||||||.||||||||||.
Sbjct 1846  GGTGGGACAGGGCAGAGGAGATCAAGTTTGAACAGCATCAACTCATCAGATGCAAAGCGATCCGGTGTCAAGAG  1919

Query 1455  CTCTGGTTCAGAGGGAAGTGCCCCGATCAACAATTCTGTCATCTCC-GTTGACTATAAGAGCTTTAAAGCTACT  1527
            .|||||.|||||.||||||||.||.||||||||||||||||| ||| ||||||||||||||.||||||||.|||
Sbjct 1920  TTCTGGGTCAGATGGAAGTGCTCCCATCAACAATTCTGTCAT-TCCTGTTGACTATAAGAGTTTTAAAGCCACT  1992

Query 1528  TGGACGGAAGTGGTGCACATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAGGCCAAGAAGGA  1601
            |||||.||.||||||||.||||||||||||.|.|||.|.|||||||||||||||||.||.||.|||||||||||
Sbjct 1993  TGGACTGAGGTGGTGCAGATCAATCGGGAGCGGTGGCGAGCCAAGGTACCCAAAGAAGAAAAAGCCAAGAAGGA  2066

Query 1602  AGCAGAGGAAAAGGCTCGCATGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCAGGCTGAAGAAG  1675
            |||.||.||.|||||||||.||||.||.|||||..||||||||||||||||||||||||||||.||||||.|||
Sbjct 2067  AGCTGAAGAGAAGGCTCGCCTGGCTGCTGAGGAAAAGCAAAAGGAAATGGAAGCCAAAAGCCAAGCTGAACAAG  2140

Query 1676  GCGCATCTGGCAAAGCTGAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACACGGGCAAACAAA  1749
            ||.||.|..||||||..|||||||||||.||.||||||.|.||.|.||||||||||||||||||      |||.
Sbjct 2141  GCACAACCAGCAAAGGCGAGAAAAAGACATCAGGAGAAGCCAAAAGTCAAGTCAATGGAACACG------CAAG  2208

Query 1750  AGTGACAACCCTCGTGGGAAAAATTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAATGGTGACTTCAA  1823
            .||||.||||||||||||||.||.|||||||..||.|||   .||||.|||.||||.|||||.||||||||.||
Sbjct 2209  GGTGATAACCCTCGTGGGAAGAACTCCAAAGGAGAAAAG---GCAGGCGAAAAGCAGCAGAACGGTGACTTGAA  2279

Query 1824  AGATGGTAAAAATAAGACAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAACAGATGATTCAC  1897
            |||.||||||||||||.|||||||||||||||||||.||||.|||||||||.||||||||||||||||||.||.
Sbjct 2280  AGACGGTAAAAATAAGGCAGACAAGAAGGATCACTCCAACACCGGAAATGAGTCAAAGAAAACAGATGATCCAG  2353

Query 1898  AAGAG  1902
            |.|||
Sbjct 2354  AGGAG  2358

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