Nucleotide Global Alignment

Description

Query:
TRCN0000489302
Subject:
XM_006505734.1
Aligned Length:
2317
Identities:
1655
Gaps:
434

Alignment

Query    1  --------------------------------------AT---GGAGTCGCCA---------------------  12
                                                  ||   |||| |||||                     
Sbjct    1  ATGACGGACACCAGCCACAAGAAAGAGGGCTTCAAGAAATGTAGGAG-CGCCACTTTCAGCATCGACGGGTACA  73

Query   13  -----ACCA----------------AGGAGATTGAAGAAT----------TTG---------------------  34
                 ||||                ||||||  .||||||          |||                     
Sbjct   74  GCTTCACCATCGTTGCAAATGAAGCAGGAGA--CAAGAATGCCAGACCACTTGCTCGCTTCTCCCGGTCTAAGT  145

Query   35  ---AGA---------GCAACTCTCT-----------------GAAATA-----------------CCTGCAA--  60
               |||         |.|||||.||                 |.||||                 ||..|||  
Sbjct  146  CACAGAACTGCCTGTGGAACTCCCTCATTGATGGGCTCACTGGGAATATTAAGGAGAAACCACGGCCAACAATT  219

Query   61  --CCGGAACA---GATC-----GAGAAAATCTGGC-------TTCGGCTCCGCGGGCTGAG----GAAATAT--  111
              ||.|.|||   ||.|     .|||||.||||||       || |.|.|.||.||.| ||    |||...|  
Sbjct  220  GTCCAGGACACGCGACCCCCAGAAGAAATTCTGGCAGATGAGTT-GCCACAGCTGGAT-AGCCCAGAAGCTTTG  291

Query  112  ---AAGAAAACGTCCCAGAGATTACGGTCTTTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCT  182
               ||||.|.|.|.|   ||.|||||||||||||||||.||||||||..||||.||.||.||.||||||||.||
Sbjct  292  GTGAAGACATCTTTC---AGGTTACGGTCTTTGGTCAAGCAATTAGAACGAGGAGAGGCCTCTGTGGTAGACCT  362

Query  183  TAAGAAGAATTTGGAATATGCAGCCACAGTGCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATA  256
            ||||||||||.|||||||||||||||||||||||||||||||.||||||||||||||||||.||||.|||||||
Sbjct  363  TAAGAAGAATCTGGAATATGCAGCCACAGTGCTTGAATCTGTATATATTGATGAAACAAGGCGACTGCTGGATA  436

Query  257  CAGAGGATGAGCTCAGTGACATTCAGTCAGATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTC  330
            |||||||||||||.|||||||||||.|||||||||||||||||.||.||.||.||.||||||||||||||||||
Sbjct  437  CAGAGGATGAGCTTAGTGACATTCAATCAGATGCTGTGCCTTCAGAAGTTCGGGATTGGCTGGCCTCCACCTTC  510

Query  331  ACGCGGCAGATGGGGATGATGCTCAGGAGGAGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCA  404
            ||.||||||||||||||||||||.|||||.||.||.|||||||||.||||||||||||||||.||.||.|||||
Sbjct  511  ACACGGCAGATGGGGATGATGCTTAGGAGAAGTGATGAGAAGCCCAGGTTCAAGAGCATCGTCCATGCGGTGCA  584

Query  405  GGCTGGGATATTTGTGGAGAGAATGTATAGACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTA  478
            .|||||||||||||||||.||||||||.|||||||||||||||||||||||.||||||||||||||.|||||.|
Sbjct  585  AGCTGGGATATTTGTGGAAAGAATGTACAGACGGACATCAAACATGGTTGGGCTGAGCTATCCACCGGCTGTAA  658

Query  479  TTGAGGCATTAAAGGATGTGGACAAGTGGTCATTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCA  552
            |.||.|||||.|||||||||||.|.||||||.||.||.||||||||||||||||||||||||||.|||||||||
Sbjct  659  TCGATGCATTGAAGGATGTGGATACGTGGTCCTTCGATGTCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCA  732

Query  553  CTGAAATTTATTTTCTATGAACTACTCACACGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACT  626
            |||||.||.||||||||||||.||||||||||||||||.||||||||||||||.|||||.||.|||||||||||
Sbjct  733  CTGAAGTTCATTTTCTATGAATTACTCACACGTTATGACCTGATCAGCCGTTTTAAGATACCGATTTCTGCACT  806

Query  627  TGTCTCATTTGTGGAGGCCCTGGAAGTGGGATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTG  700
            |||||||||||||||||||||.||||||||.||||||||||||||||||||||||||||||.|.|||||.||.|
Sbjct  807  TGTCTCATTTGTGGAGGCCCTCGAAGTGGGTTACAGCAAGCACAAAAATCCTTACCATAACCTGATGCATGCAG  880

Query  701  CCGATGTTACACAGACAGTGCATTACCTCCTCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATC  774
            |.||.||.||||||||.||||||||||||||.||||||||||||||.||.|||||||||||.||||||||||||
Sbjct  881  CTGACGTCACACAGACTGTGCATTACCTCCTTTATAAGACAGGAGTAGCAAACTGGCTGACAGAGCTGGAGATC  954

Query  775  TTTGCTATAATCTTCTCAGCTGCCATCCATGACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGAC  848
            |||||.||||||||.||.|||||||||||||||||.||.|||||.|||||.||.||||||||||||||||||||
Sbjct  955  TTTGCAATAATCTTTTCGGCTGCCATCCATGACTATGAACATACTGGAACTACAAACAATTTCCACATTCAGAC  1028

Query  849  TCGGTCTGATCCAGCTATTCTGTATAATGACAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCC  922
            ||||||.|||||||||||.|||||.||||||||||||||.||||||||.|||||..|.||||||||.||.||||
Sbjct 1029  TCGGTCAGATCCAGCTATCCTGTACAATGACAGATCTGTCCTGGAGAACCACCACCTGAGTGCAGCCTACCGCC  1102

Query  923  TTCTGCAAGATGACGAGGAAATGAATATTTTGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTG  996
            |||||||.||.|||||.||.|||||||||.||.|||||||||||||||||||||||||||||||||||||.|||
Sbjct 1103  TTCTGCAGGAAGACGAAGAGATGAATATTCTGGTTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTG  1176

Query  997  GTAATTGAAATGGTGATGGCCACAGATATGTCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCA  1070
            ||.|||||.|||||.|||||||||||||||||.|||||.|||||.|||||||||||.||||||||.||.|||||
Sbjct 1177  GTTATTGAGATGGTAATGGCCACAGATATGTCCTGTCATTTCCAGCAAATCAAAGCCATGAAGACAGCCCTGCA  1250

Query 1071  GCAGCCAGAAGCCATTGAAAAGCCAAAAGCCTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAA  1144
            |||.||||||||.|||||.|||||.||||||||||||||.|||.|.||.||||||||.||.||.|||||.||.|
Sbjct 1251  GCAACCAGAAGCAATTGAGAAGCCGAAAGCCTTATCCCTCATGTTACACACAGCAGACATCAGTCATCCTGCGA  1324

Query 1145  AAGCATGGGACCTCCATCATCGCTGGACAATGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCA  1218
            |||||||||||||.||.||.||||||||.|||||.|||||||||||||||||.|||||||||||||||||||||
Sbjct 1325  AAGCATGGGACCTGCACCACCGCTGGACCATGTCTCTCCTGGAGGAGTTCTTTAGACAGGGTGACAGAGAAGCA  1398

Query 1219  GAGCTGGGGCTGCCTTTTTCTCCTCTGTGTGACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCAT  1292
            ||||||||||||||.|||||||||||.||||||.|||||||.||.||||||||||||||||||||.|||||.||
Sbjct 1399  GAGCTGGGGCTGCCATTTTCTCCTCTTTGTGACAGAAAGTCAACCATGGTTGCTCAGTCACAAGTGGGTTTTAT  1472

Query 1293  TGATTTCATCGTGGAACCCACCTTCACTGTGCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATG  1366
            |||.|||||.|||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.|
Sbjct 1473  TGACTTCATTGTGGAGCCCACCTTCACTGTGCTCACGGACATGACCGAGAAGATTGTGAGTCCATTAATTGACG  1546

Query 1367  AAACCTCTCAAACTGGTGGGACAGGACAGAGGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGA  1440
            |||.|||.||.||||||||||||||.||||||.|.||.||||||||.|||||||.|||.||||||||.||||||
Sbjct 1547  AAAGCTCCCAGACTGGTGGGACAGGGCAGAGGAGATCAAGTTTGAACAGCATCAACTCATCAGATGCAAAGCGA  1620

Query 1441  TCAGGTGTCAAGACCTCTGGTTCAGAGGGAAGTGCCCCGATCAACAATTCTGTCATCTCC-GTTGACTATAAGA  1513
            ||.||||||||||..|||||.|||||.||||||||.||.||||||||||||||||| ||| |||||||||||||
Sbjct 1621  TCCGGTGTCAAGAGTTCTGGGTCAGATGGAAGTGCTCCCATCAACAATTCTGTCAT-TCCTGTTGACTATAAGA  1693

Query 1514  GCTTTAAAGCTACTTGGACGGAAGTGGTGCACATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAG  1587
            |.||||||||.||||||||.||.||||||||.||||||||||||.|.|||.|.|||||||||||||||||.||.
Sbjct 1694  GTTTTAAAGCCACTTGGACTGAGGTGGTGCAGATCAATCGGGAGCGGTGGCGAGCCAAGGTACCCAAAGAAGAA  1767

Query 1588  AAGGCCAAGAAGGAAGCAGAGGAAAAGGCTCGCATGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAG  1661
            ||.||||||||||||||.||.||.|||||||||.||||.||.|||||..|||||||||||||||||||||||||
Sbjct 1768  AAAGCCAAGAAGGAAGCTGAAGAGAAGGCTCGCCTGGCTGCTGAGGAAAAGCAAAAGGAAATGGAAGCCAAAAG  1841

Query 1662  CCAGGCTGAAGAAGGCGCATCTGGCAAAGCTGAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAA  1735
            |||.||||||.|||||.||.|..||||||..|||||||||||.||.||||||.|.||.|.||||||||||||||
Sbjct 1842  CCAAGCTGAACAAGGCACAACCAGCAAAGGCGAGAAAAAGACATCAGGAGAAGCCAAAAGTCAAGTCAATGGAA  1915

Query 1736  CACGGGCAAACAAAAGTGACAACCCTCGTGGGAAAAATTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAG  1809
            ||||      |||..||||.||||||||||||||.||.|||||||..||.|||   .||||.|||.||||.|||
Sbjct 1916  CACG------CAAGGGTGATAACCCTCGTGGGAAGAACTCCAAAGGAGAAAAG---GCAGGCGAAAAGCAGCAG  1980

Query 1810  AATGGTGACTTCAAAGATGGTAAAAATAAGACAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAA  1883
            ||.||||||||.|||||.||||||||||||.|||||||||||||||||||.||||.|||||||||.||||||||
Sbjct 1981  AACGGTGACTTGAAAGACGGTAAAAATAAGGCAGACAAGAAGGATCACTCCAACACCGGAAATGAGTCAAAGAA  2054

Query 1884  AACAGATGATTCACAAGAG-------------------------------------------------------  1902
            ||||||||.|.|| ||||.                                                       
Sbjct 2055  AACAGATGGTACA-AAGAAGCGTTCTCATGGCTCACCTGCTCCGAGCACTAGTTCCACAAGTCGCATTACCTTG  2127

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2128  CCAGTCATCAAGCCTCCTTTGCGTCACTTTAAGCGTCCTGCTTATGCATCTAGCTCCTATGCACCTTCCGTCCC  2201

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2202  GAAGAAAACTGATGATCATCCTGTAAGATACAAGATGCTGGATCAGCGGATCAAGATGAAAAAGATCCAGAACA  2275

Query 1903  -----------------------  1902
                                   
Sbjct 2276  TCTCTCATCACTGGAACAAAAAA  2298

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