Nucleotide Global Alignment

Description

Query:
TRCN0000489338
Subject:
XM_006534950.4
Aligned Length:
1278
Identities:
883
Gaps:
137

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGCCTCCATTTCTTATACTACTGCAGTGAACCAACCTTGGATGTGAAAATTGCCTTTTGTCAGGGATTCGA  74

Query    1  ----------------------------------------ATGAGCAGAAGCAAGCGT-GACAACAATTTTTAT  33
                                                    |||||||.||||||| || ||||||.|.||.||.
Sbjct   75  TAAACACGTGGATGTGTCATCTATTGCCAAACATTACAACATGAGCAAAAGCAAG-GTGGACAACCAGTTCTAC  147

Query   34  AGTGTAGAGATTGGAGATTCTACATTCACAGTCCTGAAACGATATCAGAATTTAAAACCTATAGGCTCAGGAGC  107
            |||||.||..|.||.||.||.||.|||||.||.||.||.||.||.|||||..|.||.||.||.|||||.||.||
Sbjct  148  AGTGTGGAAGTGGGGGACTCAACCTTCACCGTTCTTAAGCGCTACCAGAACCTGAAGCCAATTGGCTCTGGGGC  221

Query  108  TCAAGGAATAGTATGCGCAGCTTATGATGCCATTCTTGAAAGAAATGTTGCAATCAAGAAGCTAAGCCGACCAT  181
            |||.||||||||.||.||.||.||.||.||..|.|||||.||||||||.||.||.||||||||.|||.||||.|
Sbjct  222  TCAGGGAATAGTCTGTGCTGCGTACGACGCTGTCCTTGACAGAAATGTGGCCATTAAGAAGCTCAGCAGACCCT  295

Query  182  TTCAGAATCAGACTCATGCCAAGCGGGCCTACAGAGAGCTAGTTCTTATGAAATGTGTTAATCACAAAAATATA  255
            |.|||||.||.|||||.||||||.||||.|||.|.|||||.||.||.|||||.|||||.||.||.|||||.||.
Sbjct  296  TCCAGAACCAAACTCACGCCAAGAGGGCTTACCGGGAGCTGGTCCTCATGAAGTGTGTGAACCATAAAAACATT  369

Query  256  ATTGGCCTTTTGAATGTTTTCACACCACAGAAATCCCTAGAAGAATTTCAAGATGTTTACATAGTCATGGAGCT  329
            |||.||.|.||.||||||||.|||||.||||||.|.||.||.||.||.||||||||.|||.||||.|||||.||
Sbjct  370  ATTAGCTTATTAAATGTTTTTACACCCCAGAAAACACTGGAGGAGTTCCAAGATGTCTACTTAGTGATGGAACT  443

Query  330  CATGGATGCAAATCTTTGCCAAGTGATTCAGATGGAGCTAGATCATGAAAGAATGTCCTACCTTCTCTATCAGA  403
            .|||||.||.||.||.||.||.|||||||||||||||||.||.||.||..|.|||||.|||.|.||.||.||||
Sbjct  444  GATGGACGCCAACCTGTGTCAGGTGATTCAGATGGAGCTGGACCACGAGCGGATGTCTTACTTGCTGTACCAGA  517

Query  404  TGCTGTGTGGAATCAAGCACCTTCATTCTGCTGGAATTATTCATCGGGACTTAAAGCCCAGTAATATAGTAGTA  477
            ||||||||||.|||||||||||.||.||.|||||.||.||.||..||||||||||.||||||||.||.|||||.
Sbjct  518  TGCTGTGTGGCATCAAGCACCTCCACTCCGCTGGGATCATCCACAGGGACTTAAAACCCAGTAACATTGTAGTC  591

Query  478  AAATCTGATTGCACTTTGAAGATTCTTGACTTCGGTCTGGCCAGGACTGCAGGAACGAGTTTTATGATGACGCC  551
            ||.|||||||||||..||||.||.||.||||||||.|||||||||||.||.||.||.||.||.||||||||.||
Sbjct  592  AAGTCTGATTGCACACTGAAAATCCTCGACTTCGGACTGGCCAGGACAGCGGGTACAAGCTTCATGATGACTCC  665

Query  552  TTATGTAGTGACTCGCTACTACAGAGCACCCGAGGTCATCCTTGGCATGGGCTACAAGGAAAACGTGGATTTAT  625
            .|||||.|||||.||.||.||||||||.||.|||||||||||.|||||||||||||||||.|||||.||..|.|
Sbjct  666  GTATGTGGTGACGCGATATTACAGAGCCCCTGAGGTCATCCTGGGCATGGGCTACAAGGAGAACGTTGACCTGT  739

Query  626  GGTCTGTGGGGTGCATTATGGGAGAAATGGTTTGCCACAAAA-------TCCTCTTTCCAGGAAGGGACTATAT  692
            ||||.||.||||||||.||||||||||||||       ||||       |.||.||.||.||.|..||..||||
Sbjct  740  GGTCAGTAGGGTGCATCATGGGAGAAATGGT-------AAAAGGCACAGTGCTGTTCCCTGGCACTGATCATAT  806

Query  693  TGATCAGTGGAATAAAGTTATTGAACAGCTTGGAACACCATGTCCTGAATTCATGAAGAAACTGCAACCAACAG  766
            |||.||||||||.|||||.||.||.|||||.|||||.||.|||||.||.||||||||||||.||||.||.||||
Sbjct  807  TGACCAGTGGAACAAAGTCATCGAGCAGCTAGGAACTCCGTGTCCAGAGTTCATGAAGAAATTGCAGCCCACAG  880

Query  767  TAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTGATGTCCTTTTC  840
            |.||.|..|||||.||.||..|.||.||.||.||.|||...|.|||....||.|||||.||.|||..|||.|||
Sbjct  881  TCAGAAACTACGTGGAGAATCGGCCCAAGTACGCAGGACTCACCTTCCCCAAGCTCTTTCCAGATTCCCTCTTC  954

Query  841  CCAGCTGACTCAGAACACAACAAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAATAGA  914
            |||||.||.||.||.|||||.||||||||||||||.||.||.|||||||||||.||.||.|||.|.||.||.||
Sbjct  955  CCAGCGGATTCTGAGCACAATAAACTTAAAGCCAGCCAAGCCAGGGATTTGTTGTCTAAGATGTTAGTGATTGA  1028

Query  915  TGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCTGAAG  988
            ..||.|.||.|||||.||.||.||.||.||.||.||.||.|||||||||||.||.|||||.||.||..||||||
Sbjct 1029  CCCAGCGAAGAGGATATCGGTGGACGACGCACTGCAGCATCCGTACATCAACGTTTGGTACGACCCGGCTGAAG  1102

Query  989  CAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAAAGAA  1062
            ..||.||.||.||.||..||||...|||.||||||.|.|||||||||||.|||||.||.|||||.|||||||||
Sbjct 1103  TGGAGGCGCCTCCGCCTCAGATATATGATAAGCAGCTGGATGAAAGGGAGCACACCATCGAAGAATGGAAAGAA  1176

Query 1063  TTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGG---AGTTATACGGGGGCAGCCCTCTCC  1133
            .|.||.||.|||||.||.|||.|||..||.||||..||.||||||||   |||.|.|   ||.||||||||.||
Sbjct 1177  CTTATCTACAAGGAGGTAATGAACTCAGAAGAGAAGACTAAGAATGGCGTAGTCAAA---GGCCAGCCCTCGCC  1247

Query 1134  TTTAGCACAGGTGCAGCAGG  1153
            ||.|||||||||||||||| 
Sbjct 1248  TTCAGCACAGGTGCAGCAG-  1266

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