Nucleotide Global Alignment

Description

Query:
TRCN0000489540
Subject:
XM_011510946.2
Aligned Length:
2175
Identities:
1800
Gaps:
372

Alignment

Query    1  ATGAACGCGGCGGTGGTGAGGCGGACGCAGGAGGCGCTGGGGAAAGTGATTCGGAGGCCGCCGCTGACAGAGAA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct    1  ATGAACGCGGCGGTGGTGAGGCGGACGCAGGAGGCGCTGGGGAAAGTGATTCGGAGGCCGCCGCTGACCGAGAA  74

Query   75  GCTGCTGAGCAAGCCCCCGTTCCGCTACCTGCACGACATCATCACGGAGGTGATTAGAATGACTGGTTTCATGA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GCTGCTGAGCAAGCCCCCGTTCCGCTACCTGCACGACATCATCACGGAGGTGATTAGAATGACTGGTTTCATGA  148

Query  149  AGGGCCTCTACACAGACGCCGAGATGAAGTCTGATAATGTGAAGGATAAAGATGCAAAAATTAGCTTCCTACAA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGGGCCTCTACACAGACGCCGAGATGAAGTCTGATAATGTGAAGGATAAAGATGCAAAAATTAGCTTCCTACAA  222

Query  223  AAGGCCATAGACGTGGTTGTAATGGTGTCGGGAGAGCCACTGTTGGCCAAACCAGCCCGAATCGTGGCGGGGCA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AAGGCCATAGACGTGGTTGTAATGGTGTCGGGAGAGCCACTGTTGGCCAAACCAGCCCGAATCGTGGCGGGGCA  296

Query  297  TGAGCCTGAAAGAACAAACGAGCTGCTCCAGATAATTGGAAAATGCTGTCTCAACAAGCTCTCTAGTGACGATG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGAGCCTGAAAGAACAAACGAGCTGCTCCAGATAATTGGAAAATGCTGTCTCAACAAGCTCTCTAGTGACGATG  370

Query  371  CGGTGCGGAGGGTTTTAGCTGGAGAGAAGGGAGAAGTGAAAGGCCGGGCCTCACTGACCTCAAGATCTCAGGAA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CGGTGCGGAGGGTTTTAGCTGGAGAGAAGGGAGAAGTGAAAGGCCGGGCCTCACTGACCTCAAGATCTCAGGAA  444

Query  445  TTGGATAATAAGAATGTGCGAGAAGAAGAGTCCAGAGTTCACAAAAATACAGAGGATAGAGGAGACGCTGAAAT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTGGATAATAAGAATGTGCGAGAAGAAGAGTCCAGAGTTCACAAAAATACAGAGGATAGAGGAGACGCTGAAAT  518

Query  519  AAAAGAGAGAAGTACAAGCAGAGATCGAAAACAGAAGGAAGAATTGAAAGAAGACCGCAAGCCAAGAGAAAAGG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AAAAGAGAGAAGTACAAGCAGAGATCGAAAACAGAAGGAAGAATTGAAAGAAGACCGCAAGCCAAGAGAAAAGG  592

Query  593  ACAAGGACAAGGAGAAGGCCAAGGAGAATGGCGGAAACAGACACAGAGAAGGGGAGAGAGAGAGAGCCAAAGCC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACAAGGACAAGGAGAAGGCCAAGGAGAATGGCGGAAACAGACACAGAGAAGGGGAGAGAGAGAGAGCCAAAGCC  666

Query  667  CGGGCCAGGCCAGACAGCGAGCGACAGAAAGACAGAGGCAACAGGGAGCGGGACAGAGACTCCGAGCGCAAGAA  740
            ||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CGGGCCAGGCCAGACAACGAGCGACAGAAAGACAGAGGCAACAGGGAGCGGGACAGAGACTCCGAGCGCAAGAA  740

Query  741  GGAGACAGAGAGAAAGAGTGAGGGGGGGAAAGAGAAGGAGAGACTGAGAGACAGGGACCGAGAGCGCGACCGGG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGAGACAGAGAGAAAGAGTGAGGGGGGGAAAGAGAAGGAGAGACTGAGAGACAGGGACCGAGAGCGCGACCGGG  814

Query  815  ACAAAGGGAAGGACAGGGACAGACGGAGAGTGAAAAACGGGGAGCACTCCTGGGACCTGGACAGGGAGAAGAAC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ACAAAGGGAAGGACAGGGACAGACGGAGAGTGAAAAACGGGGAGCACTCCTGGGACCTGGACAGGGAGAAGAAC  888

Query  889  AGAGAGCATGACAAACCCGAGAAAAAGTCAGCAAGCTCAGGGGAGATGTCTAAAAAGTTATCAGATGGAACTTT  962
            |||||||||||||||||.|||||||                                                 
Sbjct  889  AGAGAGCATGACAAACCTGAGAAAA-------------------------------------------------  913

Query  963  TAAAGACTCCAAGGCTGAAACAGAGACTGAGATTTCCACTAGAGCTTCCAAGTCATTGACAACAAAAACATCAA  1036
                                   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  914  -----------------------AGACTGAGATTTCCACTAGAGCTTCCAAGTCATTGACAACAAAAACATCAA  964

Query 1037  AACGGCGATCCAAAAATTCAGTGG--------------------------------------------------  1060
            ||||||||||||||||||||||||                                                  
Sbjct  965  AACGGCGATCCAAAAATTCAGTGGAAGGAAGAAGGGACCCTAAAACCAGTGAAAATAGTCTTTCCCCTGAAAAG  1038

Query 1061  --------------------------------------------------------------------------  1060
                                                                                      
Sbjct 1039  GAACATAACTTTTCCTACTGTAAAGCTAAGAAGGAACATAGCATGAAACAGCTTGGAAGGAAGGAGGATAATAT  1112

Query 1061  --------------------------------------------------------------------------  1060
                                                                                      
Sbjct 1113  TTCAGCTAAAAGTTTAGACTCCATAGTGTCTGGAATAAATAATGAGCCAAATCAGGAAACGACAACATCAGAAA  1186

Query 1061  --------------------------------------------------------------------------  1060
                                                                                      
Sbjct 1187  TAGGAACAAAAGAAGCTAATATTAACTCAACTAGTATTTCAGATGATAATTCAGCTAGTCTGCGGTGTGAGAAT  1260

Query 1061  ----------------------------AAGGTGACTCCACCAGTGATGCAGAAGGAGATGCTGGACCTGCTGG  1106
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261  ATTCAGCCCAACCCCACAGAGAAGCAGAAAGGTGACTCCACCAGTGATGCAGAAGGAGATGCTGGACCTGCTGG  1334

Query 1107  CCAAGATAAGTCTGAGGTGCCAGAGACTCCAGAAATTCCTAATGAGCTTTCATCCAACATCAGAAGAATTCCTC  1180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335  CCAAGATAAGTCTGAGGTGCCAGAGACTCCAGAAATTCCTAATGAGCTTTCATCCAACATCAGAAGAATTCCTC  1408

Query 1181  GGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACAGCATGGAGGCGCTACAAATGGATAGG  1254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409  GGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACAGCATGGAGGCGCTACAAATGGATAGG  1482

Query 1255  TCAGGGAGTGGTAAAACCGTTTCAAATGTGATTACAGAGTCACACAATTCTGACAATGAAGAGGATGATCAATT  1328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483  TCAGGGAGTGGTAAAACCGTTTCAAATGTGATTACAGAGTCACACAATTCTGACAATGAAGAGGATGATCAATT  1556

Query 1329  TGTGGTGGAAGCTGCCCCTCAGCTCTCTGAAATGTCAGAAATTGAAATGGTAACAGCAGTGGAACTAGAAGAAG  1402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557  TGTGGTGGAAGCTGCCCCTCAGCTCTCTGAAATGTCAGAAATTGAAATGGTAACAGCAGTGGAACTAGAAGAAG  1630

Query 1403  AGGAGAAGCATGGTGGACTTGTGAAAAAAATTTTGGAGACGAAGAAAGATTATGAGAAATTGCAGCAGTCACCC  1476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631  AGGAGAAGCATGGTGGACTTGTGAAAAAAATTTTGGAGACGAAGAAAGATTATGAGAAATTGCAGCAGTCACCC  1704

Query 1477  AAACCTGGGGAGAAGGAGCGATCTCTCTTTGAGTCGGCATGGAAGAAGGAGAAGGACATCGTTTCCAAGGAGAT  1550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705  AAACCTGGGGAGAAGGAGCGATCTCTCTTTGAGTCGGCATGGAAGAAGGAGAAGGACATCGTTTCCAAGGAGAT  1778

Query 1551  AGAGAAGCTCCGCACGTCCATCCAGACCCTGTGCAAGAGCGCACTTCCCCTGGGGAAGATCATGGACTACATCC  1624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779  AGAGAAGCTCCGCACGTCCATCCAGACCCTGTGCAAGAGCGCACTTCCCCTGGGGAAGATCATGGACTACATCC  1852

Query 1625  AGGAAGACGTGGATGCCATGCAGAATGAGCTGCAGATGTGGCACAGCGAGAACAGGCAGCACGCCGAGGCCCTG  1698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853  AGGAAGACGTGGATGCCATGCAGAATGAGCTGCAGATGTGGCACAGCGAGAACAGGCAGCACGCCGAGGCCCTG  1926

Query 1699  CAGCAGGAGCAGAGGATCACAGACTGTGCCGTGGAGCCCTTAAAGGCTGAGCTCGCGGAGCTGGAGCAGCTGAT  1772
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927  CAGCAGGAGCAGAGGATCACAGACTGTGCCGTGGAGCCCTTAAAGGCTGAGCTCGCGGAGCTGGAGCAGCTGAT  2000

Query 1773  CAAAGACCAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTCAAGAATGAAGAAAAAATCCAGAAAATGG  1846
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001  CAAAGACCAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTCAAGAATGAAGAAAAAATCCAGAAAATGG  2074

Query 1847  TATATAGTATCAATTTGACTTCGAGAAGG  1875
            |||||||||||||||||||||||||||||
Sbjct 2075  TATATAGTATCAATTTGACTTCGAGAAGG  2103

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