Nucleotide Global Alignment

Description

Query:
TRCN0000489540
Subject:
XM_011510947.2
Aligned Length:
2175
Identities:
1741
Gaps:
432

Alignment

Query    1  ATGAACGCGGCGGTGGTGAGGCGGACGCAGGAGGCGCTGGGGAAAGTGATTCGGAGGCCGCCGCTGACAGAGAA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GCTGCTGAGCAAGCCCCCGTTCCGCTACCTGCACGACATCATCACGGAGGTGATTAGAATGACTGGTTTCATGA  148
                                                                      ||||||||||||||||
Sbjct    1  ----------------------------------------------------------ATGACTGGTTTCATGA  16

Query  149  AGGGCCTCTACACAGACGCCGAGATGAAGTCTGATAATGTGAAGGATAAAGATGCAAAAATTAGCTTCCTACAA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   17  AGGGCCTCTACACAGACGCCGAGATGAAGTCTGATAATGTGAAGGATAAAGATGCAAAAATTAGCTTCCTACAA  90

Query  223  AAGGCCATAGACGTGGTTGTAATGGTGTCGGGAGAGCCACTGTTGGCCAAACCAGCCCGAATCGTGGCGGGGCA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   91  AAGGCCATAGACGTGGTTGTAATGGTGTCGGGAGAGCCACTGTTGGCCAAACCAGCCCGAATCGTGGCGGGGCA  164

Query  297  TGAGCCTGAAAGAACAAACGAGCTGCTCCAGATAATTGGAAAATGCTGTCTCAACAAGCTCTCTAGTGACGATG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  165  TGAGCCTGAAAGAACAAACGAGCTGCTCCAGATAATTGGAAAATGCTGTCTCAACAAGCTCTCTAGTGACGATG  238

Query  371  CGGTGCGGAGGGTTTTAGCTGGAGAGAAGGGAGAAGTGAAAGGCCGGGCCTCACTGACCTCAAGATCTCAGGAA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  CGGTGCGGAGGGTTTTAGCTGGAGAGAAGGGAGAAGTGAAAGGCCGGGCCTCACTGACCTCAAGATCTCAGGAA  312

Query  445  TTGGATAATAAGAATGTGCGAGAAGAAGAGTCCAGAGTTCACAAAAATACAGAGGATAGAGGAGACGCTGAAAT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  313  TTGGATAATAAGAATGTGCGAGAAGAAGAGTCCAGAGTTCACAAAAATACAGAGGATAGAGGAGACGCTGAAAT  386

Query  519  AAAAGAGAGAAGTACAAGCAGAGATCGAAAACAGAAGGAAGAATTGAAAGAAGACCGCAAGCCAAGAGAAAAGG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  387  AAAAGAGAGAAGTACAAGCAGAGATCGAAAACAGAAGGAAGAATTGAAAGAAGACCGCAAGCCAAGAGAAAAGG  460

Query  593  ACAAGGACAAGGAGAAGGCCAAGGAGAATGGCGGAAACAGACACAGAGAAGGGGAGAGAGAGAGAGCCAAAGCC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  461  ACAAGGACAAGGAGAAGGCCAAGGAGAATGGCGGAAACAGACACAGAGAAGGGGAGAGAGAGAGAGCCAAAGCC  534

Query  667  CGGGCCAGGCCAGACAGCGAGCGACAGAAAGACAGAGGCAACAGGGAGCGGGACAGAGACTCCGAGCGCAAGAA  740
            ||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  535  CGGGCCAGGCCAGACAACGAGCGACAGAAAGACAGAGGCAACAGGGAGCGGGACAGAGACTCCGAGCGCAAGAA  608

Query  741  GGAGACAGAGAGAAAGAGTGAGGGGGGGAAAGAGAAGGAGAGACTGAGAGACAGGGACCGAGAGCGCGACCGGG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  609  GGAGACAGAGAGAAAGAGTGAGGGGGGGAAAGAGAAGGAGAGACTGAGAGACAGGGACCGAGAGCGCGACCGGG  682

Query  815  ACAAAGGGAAGGACAGGGACAGACGGAGAGTGAAAAACGGGGAGCACTCCTGGGACCTGGACAGGGAGAAGAAC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  683  ACAAAGGGAAGGACAGGGACAGACGGAGAGTGAAAAACGGGGAGCACTCCTGGGACCTGGACAGGGAGAAGAAC  756

Query  889  AGAGAGCATGACAAACCCGAGAAAAAGTCAGCAAGCTCAGGGGAGATGTCTAAAAAGTTATCAGATGGAACTTT  962
            |||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  757  AGAGAGCATGACAAACCTGAGAAAAAGTCAGCAAGCTCAGGGGAGATGTCTAAAAAGTTATCAGATGGAACTTT  830

Query  963  TAAAGACTCCAAGGCTGAAACAGAGACTGAGATTTCCACTAGAGCTTCCAAGTCATTGACAACAAAAACATCAA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  831  TAAAGACTCCAAGGCTGAAACAGAGACTGAGATTTCCACTAGAGCTTCCAAGTCATTGACAACAAAAACATCAA  904

Query 1037  AACGGCGATCCAAAAATTCAGTGG--------------------------------------------------  1060
            ||||||||||||||||||||||||                                                  
Sbjct  905  AACGGCGATCCAAAAATTCAGTGGAAGGAAGAAGGGACCCTAAAACCAGTGAAAATAGTCTTTCCCCTGAAAAG  978

Query 1061  --------------------------------------------------------------------------  1060
                                                                                      
Sbjct  979  GAACATAACTTTTCCTACTGTAAAGCTAAGAAGGAACATAGCATGAAACAGCTTGGAAGGAAGGAGGATAATAT  1052

Query 1061  --------------------------------------------------------------------------  1060
                                                                                      
Sbjct 1053  TTCAGCTAAAAGTTTAGACTCCATAGTGTCTGGAATAAATAATGAGCCAAATCAGGAAACGACAACATCAGAAA  1126

Query 1061  --------------------------------------------------------------------------  1060
                                                                                      
Sbjct 1127  TAGGAACAAAAGAAGCTAATATTAACTCAACTAGTATTTCAGATGATAATTCAGCTAGTCTGCGGTGTGAGAAT  1200

Query 1061  ----------------------------AAGGTGACTCCACCAGTGATGCAGAAGGAGATGCTGGACCTGCTGG  1106
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201  ATTCAGCCCAACCCCACAGAGAAGCAGAAAGGTGACTCCACCAGTGATGCAGAAGGAGATGCTGGACCTGCTGG  1274

Query 1107  CCAAGATAAGTCTGAGGTGCCAGAGACTCCAGAAATTCCTAATGAGCTTTCATCCAACATCAGAAGAATTCCTC  1180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275  CCAAGATAAGTCTGAGGTGCCAGAGACTCCAGAAATTCCTAATGAGCTTTCATCCAACATCAGAAGAATTCCTC  1348

Query 1181  GGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACAGCATGGAGGCGCTACAAATGGATAGG  1254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349  GGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACAGCATGGAGGCGCTACAAATGGATAGG  1422

Query 1255  TCAGGGAGTGGTAAAACCGTTTCAAATGTGATTACAGAGTCACACAATTCTGACAATGAAGAGGATGATCAATT  1328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423  TCAGGGAGTGGTAAAACCGTTTCAAATGTGATTACAGAGTCACACAATTCTGACAATGAAGAGGATGATCAATT  1496

Query 1329  TGTGGTGGAAGCTGCCCCTCAGCTCTCTGAAATGTCAGAAATTGAAATGGTAACAGCAGTGGAACTAGAAGAAG  1402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497  TGTGGTGGAAGCTGCCCCTCAGCTCTCTGAAATGTCAGAAATTGAAATGGTAACAGCAGTGGAACTAGAAGAAG  1570

Query 1403  AGGAGAAGCATGGTGGACTTGTGAAAAAAATTTTGGAGACGAAGAAAGATTATGAGAAATTGCAGCAGTCACCC  1476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571  AGGAGAAGCATGGTGGACTTGTGAAAAAAATTTTGGAGACGAAGAAAGATTATGAGAAATTGCAGCAGTCACCC  1644

Query 1477  AAACCTGGGGAGAAGGAGCGATCTCTCTTTGAGTCGGCATGGAAGAAGGAGAAGGACATCGTTTCCAAGGAGAT  1550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645  AAACCTGGGGAGAAGGAGCGATCTCTCTTTGAGTCGGCATGGAAGAAGGAGAAGGACATCGTTTCCAAGGAGAT  1718

Query 1551  AGAGAAGCTCCGCACGTCCATCCAGACCCTGTGCAAGAGCGCACTTCCCCTGGGGAAGATCATGGACTACATCC  1624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719  AGAGAAGCTCCGCACGTCCATCCAGACCCTGTGCAAGAGCGCACTTCCCCTGGGGAAGATCATGGACTACATCC  1792

Query 1625  AGGAAGACGTGGATGCCATGCAGAATGAGCTGCAGATGTGGCACAGCGAGAACAGGCAGCACGCCGAGGCCCTG  1698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793  AGGAAGACGTGGATGCCATGCAGAATGAGCTGCAGATGTGGCACAGCGAGAACAGGCAGCACGCCGAGGCCCTG  1866

Query 1699  CAGCAGGAGCAGAGGATCACAGACTGTGCCGTGGAGCCCTTAAAGGCTGAGCTCGCGGAGCTGGAGCAGCTGAT  1772
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867  CAGCAGGAGCAGAGGATCACAGACTGTGCCGTGGAGCCCTTAAAGGCTGAGCTCGCGGAGCTGGAGCAGCTGAT  1940

Query 1773  CAAAGACCAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTCAAGAATGAAGAAAAAATCCAGAAAATGG  1846
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941  CAAAGACCAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTCAAGAATGAAGAAAAAATCCAGAAAATGG  2014

Query 1847  TATATAGTATCAATTTGACTTCGAGAAGG  1875
            |||||||||||||||||||||||||||||
Sbjct 2015  TATATAGTATCAATTTGACTTCGAGAAGG  2043

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