Nucleotide Global Alignment

Description

Query:
TRCN0000489560
Subject:
XM_017006216.1
Aligned Length:
1748
Identities:
969
Gaps:
760

Alignment

Query    1  ---------------------------------------------------------------ATGAAAG----  7
                                                                           |.|||||    
Sbjct    1  ATGTTGTCACAATGGAGAATCCAAGGCAGAGTGGAACTTCCCAGCCTCAGAAAGGCAGAAACCAGGAAAGCTAA  74

Query    8  --------------------ACTC-TCCATTTCAAGTGACAAA------ACTGT-------ACTGG-CTTAA--  44
                                |||| ||||   ||||...||||      |.|||       ||.|| |||||  
Sbjct   75  GGAACATGAGCAGCTGACCTACTCTTCCA---CAAGGTCCAAAGCCCCCAGTGTCATCATCACAGGTCTTAAGC  145

Query   45  ------------------------------TGAAAAGTGGGAC----TTTATTGCCT-CAG-------------  70
                                          |||.||.||.|||    |..|.||.|| |||             
Sbjct  146  CAGCCACCAAATATGTATTTCACATCCGAGTGAGAACTGCGACAGGATACAGTGGCTACAGTCAGAAATTTGAA  219

Query   71  -------------------CTTCTGACATGGCAGCAGAACAAGGACAGATTCTCGTGATAGCCACCGCCGCTGT  125
                               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  220  TTTGAAACAGGAGATGAAACTTCTGACATGGCAGCAGAACAAGGACAGATTCTCGTGATAGCCACCGCCGCTGT  293

Query  126  TGGCGGATTCACTCTCCTCGTCATCCTCACTTTATTCTTCTTGATCACTGGGAGATGTCAGTGGTACATAAAAG  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  TGGCGGATTCACTCTCCTCGTCATCCTCACTTTATTCTTCTTGATCACTGGGAGATGTCAGTGGTACATAAAAG  367

Query  200  CCAAGATGAAGTCAGAAGAGAAGAGAAGAAACCACTTACAGAATGGGCATTTGCGCTTCCCGGGAATTAAAACT  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  368  CCAAGATGAAGTCAGAAGAGAAGAGAAGAAACCACTTACAGAATGGGCATTTGCGCTTCCCGGGAATTAAAACT  441

Query  274  TACATTGATCCAGATACATATGAAGACCCATCCCTAGCAGTCCATGAATTTGCAAAGGAGATTGATCCCTCAAG  347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  442  TACATTGATCCAGATACATATGAAGACCCATCCCTAGCAGTCCATGAATTTGCAAAGGAGATTGATCCCTCAAG  515

Query  348  AATTCGTATTGAGAGAGTCATTGGGGCAGGTGAATTTGGAGAAGTCTGTAGTGGGCGTTTGAAGACACCAGGGA  421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  AATTCGTATTGAGAGAGTCATTGGGGCAGGTGAATTTGGAGAAGTCTGTAGTGGGCGTTTGAAGACACCAGGGA  589

Query  422  AAAGAGAGATCCCAGTTGCCATTAAAACTTTGAAAGGTGGCCACATGGATCGGCAAAGAAGAGATTTTCTAAGA  495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  590  AAAGAGAGATCCCAGTTGCCATTAAAACTTTGAAAGGTGGCCACATGGATCGGCAAAGAAGAGATTTTCTAAGA  663

Query  496  GAAGCTAGTATCATGGGCCAGTTTGACCATCCAAACATCATTCGCCTAGAAGGGGTTGTCACCAAAAGATCCTT  569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  664  GAAGCTAGTATCATGGGCCAGTTTGACCATCCAAACATCATTCGCCTAGAAGGGGTTGTCACCAAAAGATCCTT  737

Query  570  CCCGGCCATTGGGGTGGAGGCGTTTTGCCCCAGCTTCCTGAGGGCAGGGTTTTTAAATAGCATCCAGGCCCCGC  643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  738  CCCGGCCATTGGGGTGGAGGCGTTTTGCCCCAGCTTCCTGAGGGCAGGGTTTTTAAATAGCATCCAGGCCCCGC  811

Query  644  ATCCAGTGCCAGGGGGAGGATCTTTGCCCCCCAGGATTCCTGCTGGCAGACCAGTAATGATTGTGGTGGAATAT  717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  812  ATCCAGTGCCAGGGGGAGGATCTTTGCCCCCCAGGATTCCTGCTGGCAGACCAGTAATGATTGTGGTGGAATAT  885

Query  718  ATGGAGAATGGATCCCTAGACTCCTTTTTGCGGAAGCATGATGGCCACTTCACAGTCATCCAGTTGGTCGGAAT  791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  886  ATGGAGAATGGATCCCTAGACTCCTTTTTGCGGAAGCATGATGGCCACTTCACAGTCATCCAGTTGGTCGGAAT  959

Query  792  GCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTGATATGGGTTATGTTCATCGAGACCTAGCGGCTCGGA  865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960  GCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTGATATGGGTTATGTTCATCGAGACCTAGCGGCTCGGA  1033

Query  866  ATATACTGGTCAATAGCAACTTAGTATGCAAAGTTTCTGATTTTGGTCTCTCCAGAGTGCTGGAAGATGATCCA  939
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034  ATATACTGGTCAATAGCAACTTAGTATGCAAAGTTTCTGATTTTGGTCTCTCCAGAGTGCTGGAAGATGATCCA  1107

Query  940  GAAGCTGCTTATACAACAACT----GACCTCTTCCAAACTCTAACACTTAA-------------------CCTC  990
            |||||||||||||||||||||    ||        |||.||   |.|.|||                   |.||
Sbjct 1108  GAAGCTGCTTATACAACAACTGGTGGA--------AAAATC---CCCATAAGGTGGACAGCCCCAGAAGCCATC  1170

Query  991  TGCT-------ATTCT-----GCA--------------------------------------------------  1002
            ..||       |||||     |||                                                  
Sbjct 1171  GCCTACAGAAAATTCTCCTCAGCAAGCGATGCATGGAGCTATGGCATTGTCATGTGGGAGGTCATGTCCTATGG  1244

Query 1003  --------------------------------------------------------------------------  1002
                                                                                      
Sbjct 1245  AGAGAGACCTTATTGGGAAATGTCTAACCAAGATGTCATTCTGTCCATTGAAGAAGGGTACAGACTTCCAGCTC  1318

Query 1003  --------------------------------------------------------------------------  1002
                                                                                      
Sbjct 1319  CCATGGGCTGTCCAGCATCTCTACACCAGCTGATGCTCCACTGCTGGCAGAAGGAGAGAAATCACAGACCAAAA  1392

Query 1003  --------------------------------------------------------------------------  1002
                                                                                      
Sbjct 1393  TTTACTGACATTGTCAGCTTCCTTGACAAACTGATCCGAAATCCCAGTGCCCTTCACACCCTGGTGGAGGACAT  1466

Query 1003  --------------------------------------------------------------------------  1002
                                                                                      
Sbjct 1467  CCTTGTAATGCCAGAGTCCCCTGGTGAAGTTCCGGAATATCCTTTGTTTGTCACAGTTGGTGACTGGCTAGATT  1540

Query 1003  --------------------------------------------------------------------------  1002
                                                                                      
Sbjct 1541  CTATAAAGATGGGGCAATACAAGAATAACTTCGTGGCAGCAGGGTTTACAACATTTGACCTGATTTCAAGAATG  1614

Query 1003  --------------------------------------------------------------------------  1002
                                                                                      
Sbjct 1615  AGCATTGATGACATTAGAAGAATTGGAGTCATACTTATTGGACACCAGAGACGAATAGTCAGCAGCATACAGAC  1688

Query 1003  ----------------------------------------------  1002
                                                          
Sbjct 1689  TTTACGTTTACACATGATGCACATACAGGAGAAGGGATTTCATGTA  1734

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