Nucleotide Global Alignment
Description
- Query:
- TRCN0000491572
- Subject:
- XM_006507179.3
- Aligned Length:
- 2896
- Identities:
- 1389
- Gaps:
- 1373
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCGCACCTGAAAAAGCGGGTGTATGAGGAGTTCACTAAAGTGGTTCAGCAGCAGGAGGAAATTGCTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAAGAAGCTCCGATTAACAAAGCCGAGCAAATCTGCCGCTCTCCACATAGATCTGTGTAAAGCCACCTCCCCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGATGCTTTGCAGTACCTACTCCAGTTTGCCAGAAAGCCTGTAGAAGCAGAGAGTGTGGAGGGGGTAGTCAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATTCTCTTGGAACATTATTACAAGGAAAATGATCCATCTGTGAGACTGAAAATTGCATCACTCTTGGGATTATT 296
Query 1 -----------------------------------------ATGCCATCAACATCCTGCAGAATGAAA------ 27
|.|||||.|||||.||.||||||||||
Sbjct 297 ATCAAAGACGGCAGGATTCTCTCCAGACTGCATAATGGACGACGCCATTAACATACTACAGAATGAAAAGTCTC 370
Query 28 -------------------------------------------------------------------------- 27
Sbjct 371 ACCAAGTGCTAGCTCAACTACTGGACACTTTGCTTGCAATTGGCAGTAAACTACCAGAAAATCAAGCTACCCAA 444
Query 28 ---------------------------CATCTGACAGATACGTCTCATGGTGTAAGAAATAAGTGCCTGCAGTT 74
||.|||||||||||.||.|||||||||||||||||||||.||||.||
Sbjct 445 GTGCGATTAGTGGATGTGGCCTGCAAGCACCTGACAGATACTTCCCATGGTGTAAGAAATAAGTGCTTGCAATT 518
Query 75 ACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCCAGA 148
|||||||||||||||||||||||||||||||||||||||||||.|.||||||..|||||||||||||||.||||
Sbjct 519 ACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATACTGAAGGCTCAGCTGCCAGAGATGTTCAGA 592
Query 149 AGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCAGCTATAAAAGCCATGTTGCAGCTC 222
|.|||||.|||||..||||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||
Sbjct 593 AAATTATCGGGGACCACTTCAGTGACCAAGATCCACGGGTCAGAACAGCAGCTATAAAAGCCATGTTGCAGCTC 666
Query 223 CATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAAATTACTCTCTGATGACTATGAACA 296
|||||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||.||.||
Sbjct 667 CATGAAAGAGGACTGAAGTTACACCAAACGATTTATAATCAGGCCTGTAAATTGCTCTCTGATGACTACGAGCA 740
Query 297 AGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATCCTGAAAGCATTGTCCCAATTCCTT 370
.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.||.||.||.|||||.||.|
Sbjct 741 GGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTTGTCAGCCAGCTCTATCCTGAGAGTATAGTTCCAATACCGT 814
Query 371 CTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGTCACATGGTCAGTGATGGCTCTTGG 444
||||||||||||||||.||..|||||||||||||.|||||.||||||||.||||||||||||||||||||.|||
Sbjct 815 CTTCTAATGAAGAAATCCGTCTAGTTGATGATGCATTTGGAAAAATTTGCCACATGGTCAGTGATGGCTCCTGG 888
Query 445 GTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCT 518
||||||||||||||.||.|||||.||.||||||||.|||||||||||.||.||||||||||||||||||||.||
Sbjct 889 GTGGTTCGTGTTCAAGCTGCAAAGCTATTGGGCTCGATGGAGCAAGTTAGCTCTCATTTCTTGGAGCAGACTCT 962
Query 519 TGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCGG 592
||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 963 TGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGCACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCGG 1036
Query 593 GGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTG 666
|||||||||||||||||||.||.|||||||||||||||||||||||||||.||||.||.|||||.||||||.||
Sbjct 1037 GGGAGTTTTCCAGTGGCAGGAAATGGGGAGATGATGCTCCCAAGGAAGAAATAGACACGGGGGCCGTGAACCTG 1110
Query 667 ATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGT 740
||.|||||||||||.||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1111 ATAGAGTCAGGAGCGTGTGGAGCCTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGCATTGCTGCTGT 1184
Query 741 GGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGT 814
||||||.||.||||||.|.|||||||||||.||||||||||||||.|||||||||||.||.|||||||||||||
Sbjct 1185 GGAGGCTCTGTGCATGCTAGCCCAGTCTTCGCCCTCTTTTGCTGAAAAGTGCCTTGACTTTCTAGTTGACATGT 1258
Query 815 TCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGAAAAATCTCTAACAACATCACCCTC 888
||||.|||||||||||||||||.|||||||||||.|||||.|||||||||||||||||||||||.|||||||||
Sbjct 1259 TCAATGATGAAATTGAGGAAGTGCGTCTGCAGTCCATACACACCATGAGAAAAATCTCTAACAATATCACCCTC 1332
Query 889 CGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCATGA 962
|||||||||||||||||||||||||||||||||.||||||||||||||||.||||||.||||||||||||||||
Sbjct 1333 CGAGAAGATCAGCTTGACACTGTCCTGGCTGTGTTAGAGGATTCATCCAGGGATATTAGAGAGGCTCTTCATGA 1406
Query 963 ACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAA 1036
||||||||||||.||||||||.|||||||||||||||||||||||||||.||||||||||.||.|||||..|||
Sbjct 1407 ACTCTTATGCTGCACTAATGTCTCAACCAAAGAAGGGATTCATCTTGCACTGGTGGAGCTTCTAAAAAACCTAA 1480
Query 1037 CCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTG 1110
||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.||||||||.|||||.|||
Sbjct 1481 CCAAGTACCCTACTGACAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGCAGCCGGCATCCGACCCTCGTG 1554
Query 1111 CTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGC 1184
|||||..|||||||||||||..|||||||.||||||||||||||.||.|||||||||||||||||.||||||||
Sbjct 1555 CTTCCTCTGGTGCCAGAGCTCTTGAGCACGCACCCATTTTTTGATACTGCTGAACCAGACATGGACGATCCAGC 1628
Query 1185 TTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAACAATGCCAGCATTGTTCTCAGATC 1258
|||.|||||||||||.||.|||||.||||||||||||||.||||||||.||||||||||||.|.||||||||.|
Sbjct 1629 TTACATTGCAGTTTTAGTTCTTATCTTCAATGCTGCTAAGACCTGTCCTACAATGCCAGCACTCTTCTCAGACC 1702
Query 1259 ACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGTAGA 1332
|||||.||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||
Sbjct 1703 ACACCCTCAGGCACTATGCCTACCTCCGAGACAGCCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGGAGA 1776
Query 1333 AAACTGGTGTCATCAGCTGTTTCTCCC----AGCATCATACCTCAAGAGGATCCTTCCCAGCAGTTCCTGCAGC 1402
|||||||||||.||..||| |||| |.|||||..|||||.||.|||||||||||||||||||||||||
Sbjct 1777 AAACTGGTGTCCTCCACTG----TCCCCTCTAACATCACCCCTCATGAAGATCCTTCCCAGCAGTTCCTGCAGC 1846
Query 1403 AGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATC 1476
|||||||||||||.|||||||||.||||||||.|.||.||||||||.|||||.|||||||||||||||||||||
Sbjct 1847 AGAGCCTTGAAAGGGTGTATAGTGTTCAGCACCTAGATCCTCAGGGGGCCCAAGAGCTGCTGGAATTCACCATC 1920
Query 1477 AGAG-------------TCGAG-GTTTCACCATG--GTGGCCAG-----GCTG--------------------- 1508
|||| |.||| |.||||...|| .||| ||| ||||
Sbjct 1921 AGAGATCTGCAAAGACTTGGAGAGCTTCAGTCTGAATTGG-CAGGAGTAGCTGACTTCTCTGCCACCTATCTTC 1993
Query 1509 -GTCTCAA--ACTCCTGAGCTCAAG------------------------------------------------- 1530
||.|||| .|||||.| |.|||
Sbjct 1994 AGTGTCAACTGCTCCTCA--TTAAGGCCTTGCAGGAAAAGCTGTGGAATGTGGCTGCCCCCTTGTATCTAAAGC 2065
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2066 AGAGTGATTTGGCCTCAGCAGCAGCAAAACAGATCATGGAGGAAACCTACAAAATGGAGTTTATGTACAGTGGT 2139
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2140 GTGGAAAACAAGCAGGTTGTGATCATACAGCACATGAGGCTTCAGGCCAAAGCTCTGCAACTCATAGTAACTGC 2213
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2214 ACGAACTACTCGAGGAGTAGACCCCTTATTTGGAATGTGTGAAAAATTTTTACAGGAAGTGGATTTTTTTCAGA 2287
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2288 GGTGTTTCATTGCGGATTTGCCCCACCTTCAAGATAGCTTTGTGGACAAACTCCTTGATCTTATGCCCCGACTC 2361
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2362 ATGGCATCTAAACCTGTTGAAGTGATCAAAATTCTGCAGACAATGCTGCGGCAGAGCACCTTCTTACATCTTCC 2435
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2436 GCTTCCAGAGCAGATACACAAAGCCTCAGCCACCATTATTGAGCCGGCAGGAGAGTCAGACAATCCTTTGCGGT 2509
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2510 TTACATCTGGGTTGGTGGTAGCCTTGGATGTGGATGCAACCCTGGAACATGTGCAAGACCCCCAGAACACTGTC 2583
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2584 AAGGTTCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATCCACCCCAAGCCAGCAGATTTCCGGAATCCTGG 2657
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2658 CCCAGGACGGCACCGTCTCCTCACTCAGGTGTACCTCTCCCATACTGCCTGGACAGAACCATGCCAAGTGGAAG 2731
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2732 TGAGGCTATTGCTGGCCTACAACTCCGGTGCACGAATTCCAAAATCTCCATGGCTGGAGGGTAGTGAGATGTCA 2805
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2806 CCACAGGTGGAAACCAGCATCGAGGGCACCATCCCCTTCAGTAAGCCTGTGAAAGTCTACATAATGCCCAAGCC 2879
Query 1531 ---------- 1530
Sbjct 2880 TGCAAGACGC 2889
