Nucleotide Global Alignment
Description
- Query:
- TRCN0000491572
- Subject:
- XM_006507180.1
- Aligned Length:
- 2899
- Identities:
- 1363
- Gaps:
- 1403
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCGCACCTGAAAAAGCGGGTGTATGAGGAGTTCACTAAAGTGGTTCAGCAGCAGCAGGAGGAAATTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TACCAAGAAGCTCCGATTAACAAAGCCGAGCAAATCTGCCGCTCTCCACATAGATCTGTGTAAAGCCACCTCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGCAGATGCTTTGCAGTACCTACTCCAGTTTGCCAGAAAGCCTGTAGAAGCAGAGAGTGTGGAGGGGGTAGTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGATTCTCTTGGAACATTATTACAAGGAAAATGATCCATCTGTGAGACTGAAAATTGCATCACTCTTGGGATT 296
Query 1 --------------------------------------------ATGCCATCAACATCCTGCAGAATGAAA--- 27
|.|||||.|||||.||.||||||||||
Sbjct 297 ATTATCAAAGACGGCAGGATTCTCTCCAGACTGCATAATGGACGACGCCATTAACATACTACAGAATGAAAAGT 370
Query 28 -------------------------------------------------------------------------- 27
Sbjct 371 CTCACCAAGTGCTAGCTCAACTACTGGACACTTTGCTTGCAATTGGCAGTAAACTACCAGAAAATCAAGCTACC 444
Query 28 ------------------------------CATCTGACAGATACGTCTCATGGTGTAAGAAATAAGTGCCTGCA 71
||.|||||||||||.||.|||||||||||||||||||||.||||
Sbjct 445 CAAGTGCGATTAGTGGATGTGGCCTGCAAGCACCTGACAGATACTTCCCATGGTGTAAGAAATAAGTGCTTGCA 518
Query 72 GTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCC 145
.|||||||||||||||||||||||||||||||||||||||||||||.|.||||||..|||||||||||||||.|
Sbjct 519 ATTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATACTGAAGGCTCAGCTGCCAGAGATGTTC 592
Query 146 AGAAGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCAGCTATAAAAGCCATGTTGCAG 219
||||.|||||.|||||..||||||||||||||||.||||| |||||||
Sbjct 593 AGAAAATTATCGGGGACCACTTCAGTGACCAAGATCCACG---------------------------GTTGCAG 639
Query 220 CTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAAATTACTCTCTGATGACTATGA 293
||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||.||
Sbjct 640 CTCCATGAAAGAGGACTGAAGTTACACCAAACGATTTATAATCAGGCCTGTAAATTGCTCTCTGATGACTACGA 713
Query 294 ACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATCCTGAAAGCATTGTCCCAATTC 367
.||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.||.||.||.|||||.|
Sbjct 714 GCAGGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTTGTCAGCCAGCTCTATCCTGAGAGTATAGTTCCAATAC 787
Query 368 CTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGTCACATGGTCAGTGATGGCTCT 441
|.|||||||||||||||||.||..|||||||||||||.|||||.||||||||.||||||||||||||||||||.
Sbjct 788 CGTCTTCTAATGAAGAAATCCGTCTAGTTGATGATGCATTTGGAAAAATTTGCCACATGGTCAGTGATGGCTCC 861
Query 442 TGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGAC 515
|||||||||||||||||.||.|||||.||.||||||||.|||||||||||.||.||||||||||||||||||||
Sbjct 862 TGGGTGGTTCGTGTTCAAGCTGCAAAGCTATTGGGCTCGATGGAGCAAGTTAGCTCTCATTTCTTGGAGCAGAC 935
Query 516 CCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTT 589
.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 936 TCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGCACTGCACATGAGCGTGCCAAGGAACTTTACAGTT 1009
Query 590 CGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAAC 663
||||||||||||||||||||||.||.|||||||||||||||||||||||||||.||||.||.|||||.||||||
Sbjct 1010 CGGGGGAGTTTTCCAGTGGCAGGAAATGGGGAGATGATGCTCCCAAGGAAGAAATAGACACGGGGGCCGTGAAC 1083
Query 664 TTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGC 737
.||||.|||||||||||.||||||||.||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1084 CTGATAGAGTCAGGAGCGTGTGGAGCCTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGCATTGCTGC 1157
Query 738 TGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACA 811
|||||||||.||.||||||.|.|||||||||||.||||||||||||||.|||||||||||.||.||||||||||
Sbjct 1158 TGTGGAGGCTCTGTGCATGCTAGCCCAGTCTTCGCCCTCTTTTGCTGAAAAGTGCCTTGACTTTCTAGTTGACA 1231
Query 812 TGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGAAAAATCTCTAACAACATCACC 885
|||||||.|||||||||||||||||.|||||||||||.|||||.|||||||||||||||||||||||.||||||
Sbjct 1232 TGTTCAATGATGAAATTGAGGAAGTGCGTCTGCAGTCCATACACACCATGAGAAAAATCTCTAACAATATCACC 1305
Query 886 CTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCA 959
||||||||||||||||||||||||||||||||||||.||||||||||||||||.||||||.|||||||||||||
Sbjct 1306 CTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGTTAGAGGATTCATCCAGGGATATTAGAGAGGCTCTTCA 1379
Query 960 TGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATT 1033
|||||||||||||||.||||||||.|||||||||||||||||||||||||||.||||||||||.||.|||||..
Sbjct 1380 TGAACTCTTATGCTGCACTAATGTCTCAACCAAAGAAGGGATTCATCTTGCACTGGTGGAGCTTCTAAAAAACC 1453
Query 1034 TAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTG 1107
|||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.||||||||.|||||.
Sbjct 1454 TAACCAAGTACCCTACTGACAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGCAGCCGGCATCCGACCCTC 1527
Query 1108 GTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCC 1181
||||||||..|||||||||||||..|||||||.||||||||||||||.||.|||||||||||||||||.|||||
Sbjct 1528 GTGCTTCCTCTGGTGCCAGAGCTCTTGAGCACGCACCCATTTTTTGATACTGCTGAACCAGACATGGACGATCC 1601
Query 1182 AGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAACAATGCCAGCATTGTTCTCAG 1255
||||||.|||||||||||.||.|||||.||||||||||||||.||||||||.||||||||||||.|.|||||||
Sbjct 1602 AGCTTACATTGCAGTTTTAGTTCTTATCTTCAATGCTGCTAAGACCTGTCCTACAATGCCAGCACTCTTCTCAG 1675
Query 1256 ATCACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGT 1329
|.||||||.||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.
Sbjct 1676 ACCACACCCTCAGGCACTATGCCTACCTCCGAGACAGCCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGG 1749
Query 1330 AGAAAACTGGTGTCATCAGCTGTTTCTCCC----AGCATCATACCTCAAGAGGATCCTTCCCAGCAGTTCCTGC 1399
||||||||||||||.||..||| |||| |.|||||..|||||.||.||||||||||||||||||||||
Sbjct 1750 AGAAAACTGGTGTCCTCCACTG----TCCCCTCTAACATCACCCCTCATGAAGATCCTTCCCAGCAGTTCCTGC 1819
Query 1400 AGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACC 1473
||||||||||||||||.|||||||||.||||||||.|.||.||||||||.|||||.||||||||||||||||||
Sbjct 1820 AGCAGAGCCTTGAAAGGGTGTATAGTGTTCAGCACCTAGATCCTCAGGGGGCCCAAGAGCTGCTGGAATTCACC 1893
Query 1474 ATCAGAG-------------TCGAG-GTTTCACCATG--GTGGCCAG-----GCTG------------------ 1508
||||||| |.||| |.||||...|| .||| ||| ||||
Sbjct 1894 ATCAGAGATCTGCAAAGACTTGGAGAGCTTCAGTCTGAATTGG-CAGGAGTAGCTGACTTCTCTGCCACCTATC 1966
Query 1509 ----GTCTCAA--ACTCCTGAGCTCAAG---------------------------------------------- 1530
||.|||| .|||||.| |.|||
Sbjct 1967 TTCAGTGTCAACTGCTCCTCA--TTAAGGCCTTGCAGGAAAAGCTGTGGAATGTGGCTGCCCCCTTGTATCTAA 2038
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2039 AGCAGAGTGATTTGGCCTCAGCAGCAGCAAAACAGATCATGGAGGAAACCTACAAAATGGAGTTTATGTACAGT 2112
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2113 GGTGTGGAAAACAAGCAGGTTGTGATCATACAGCACATGAGGCTTCAGGCCAAAGCTCTGCAACTCATAGTAAC 2186
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2187 TGCACGAACTACTCGAGGAGTAGACCCCTTATTTGGAATGTGTGAAAAATTTTTACAGGAAGTGGATTTTTTTC 2260
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2261 AGAGGTGTTTCATTGCGGATTTGCCCCACCTTCAAGATAGCTTTGTGGACAAACTCCTTGATCTTATGCCCCGA 2334
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2335 CTCATGGCATCTAAACCTGTTGAAGTGATCAAAATTCTGCAGACAATGCTGCGGCAGAGCACCTTCTTACATCT 2408
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2409 TCCGCTTCCAGAGCAGATACACAAAGCCTCAGCCACCATTATTGAGCCGGCAGGAGAGTCAGACAATCCTTTGC 2482
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2483 GGTTTACATCTGGGTTGGTGGTAGCCTTGGATGTGGATGCAACCCTGGAACATGTGCAAGACCCCCAGAACACT 2556
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2557 GTCAAGGTTCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATCCACCCCAAGCCAGCAGATTTCCGGAATCC 2630
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2631 TGGCCCAGGACGGCACCGTCTCCTCACTCAGGTGTACCTCTCCCATACTGCCTGGACAGAACCATGCCAAGTGG 2704
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2705 AAGTGAGGCTATTGCTGGCCTACAACTCCGGTGCACGAATTCCAAAATCTCCATGGCTGGAGGGTAGTGAGATG 2778
Query 1531 -------------------------------------------------------------------------- 1530
Sbjct 2779 TCACCACAGGTGGAAACCAGCATCGAGGGCACCATCCCCTTCAGTAAGCCTGTGAAAGTCTACATAATGCCCAA 2852
Query 1531 ------------- 1530
Sbjct 2853 GCCTGCAAGACGC 2865
