Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00472
Subject:
NM_001005463.3
Aligned Length:
1785
Identities:
1298
Gaps:
145

Alignment

Query    1  ATGTTTGGGATTCAGGAAAGCATCCAACG-GAGTGGAAGCAGCATGAAGGAAGAGCCGCTGGGCAGCGGCATGA  73
            |||||||||||||||||.|..||.|..|| |.|.|||.| |.|||||||||.||||||||||||||||||||||
Sbjct    1  ATGTTTGGGATTCAGGAGAATATTCCGCGCGGGGGGACG-ACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGA  73

Query   74  ACGCGGTGCGGACGTGGATG--CAGGGCGCCGGGGTGCTGGACGCCAACACGGCGGCGCAGAGCGGGGTGGGTC  145
            ||.|||||||..||||||||  ||.||||  ||.|||.||||||||||||||||.||.||||||||.|||||.|
Sbjct   74  ACCCGGTGCGCTCGTGGATGCACACGGCG--GGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGC  145

Query  146  TGGCCCGGGCTCACTTTGAGAAGCAGCCGCCTTCCAATCTGCGGAAATCCAACTTCTTCCACTTCGTCCTGGCC  219
            ||||.|||||.|||||.||||||||||||||||||||.||.|||||||||||.||||||||||||||.|||||.
Sbjct  146  TGGCGCGGGCGCACTTCGAGAAGCAGCCGCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCG  219

Query  220  CTCTACGACAGACAGGGCCAGCCCGTGGAGATCGAGAGGACAGCGTTTGTGGGGTTCGTGGAGAAGGAAAAAGA  293
            ||||||||.||.|||||.|||||.||||||||.||.|||||.||.|||||||..||.||||||||.||.|||| 
Sbjct  220  CTCTACGATAGGCAGGGGCAGCCGGTGGAGATTGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAG-  292

Query  294  AGCC-AACAGCGAAAAGACCAATAACGGAATTCACTACCGGCTTCAGCTTCTCTACAGCAATGGGATAAGGACG  366
            |||| ||||.|||.||.|||||.|||||.||.|||||....||.|||.|..|.||||||||.||..|.||.||.
Sbjct  293  AGCCAAACAACGAGAAAACCAACAACGGCATCCACTATAAACTCCAGTTATTGTACAGCAACGGAGTCAGAACA  366

Query  367  GAGCAGGATTTCTACGTGCGCCTCATTGACTCCATGACAAAACAAGCCATAGTGTATGAAGGCCAAGACAAGAA  440
            |||||.|||.|.||.||.||||||||.||.||.|||||.|||||.|||||.||.||.||.|||||.||||||||
Sbjct  367  GAGCAAGATCTGTATGTTCGCCTCATAGATTCAATGACCAAACAGGCCATCGTCTACGAGGGCCAGGACAAGAA  440

Query  441  CCCAGAAATGTGCCGAGTCTTGCTCACACATGAGATCATGTGCAGCCGCTGTTGTGACAAGAAAAGCTGTGGCA  514
            |||.||.||||||||.||..||||.||.||.|||||||||||||||||.||.||||||||||||||.|||||||
Sbjct  441  CCCGGAGATGTGCCGTGTGCTGCTGACCCACGAGATCATGTGCAGCCGGTGCTGTGACAAGAAAAGTTGTGGCA  514

Query  515  ACCGAAATGAGACTCCCTCAGATCCAGTGATAATTGACAGGTTCTTCTTGAAATTTTTCCTCAAATGTAACCAA  588
            |..||||.||.||.||||||||.||.||.||.||||||||.|||||..|.||.|||||||||||.||.||.||.
Sbjct  515  ATAGAAACGAAACGCCCTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTTTTCCTCAAGTGCAATCAG  588

Query  589  AATTGCCTAAAGAATGCGGGAAACCCACGTGACATGCGGAGATTCCAGGTCGTGGTGTCTACGACAGTCAATGT  662
            ||.||..|.||||||||.||.|||||.||.||.|||||||||||||||||.||.||.||.||.||||||||.||
Sbjct  589  AACTGTTTGAAGAATGCAGGCAACCCTCGAGATATGCGGAGATTCCAGGTTGTTGTATCGACAACAGTCAACGT  662

Query  663  GGATGGCCATGTCCTGGCAGTCTCTGATAACATGTTTGTCCATAATAATTCCAAGCATGGGCGGAGGGCTCGGA  736
            |||.|||||.||.|||||.||.||.||.|||||||||||.||.||.||||||||.||.|||.||.||||.||..
Sbjct  663  GGACGGCCACGTGCTGGCCGTGTCAGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCC  736

Query  737  GGCTTGACCCCTCGGAAGGTACGCCCTCTTATCTGGAACATGCTACTCCCTGTATCAAAGCCATCAGCCCGAGT  810
            |.||.|||||.||.|||                        ||.|||||.||.|||||.||||||||.||.|||
Sbjct  737  GCCTAGACCCGTCAGAA------------------------GCCACTCCGTGCATCAAGGCCATCAGTCCCAGT  786

Query  811  GAAGGATGGACGACGGGAGGTGCGACTGTGATCATCATAGGGGACAATTTCTTTGATGGGTTACAGGTCATATT  884
            |||||.|||||.|||||.|||||.||.||.|||||.||.||.|||||.||||||||.|||.|.||.||..||||
Sbjct  787  GAAGGCTGGACCACGGGGGGTGCCACCGTCATCATAATTGGCGACAACTTCTTTGACGGGCTGCAAGTTGTATT  860

Query  885  CGGTACCATGCTGGTCTGGAGTGAGTTGATCACTCCTCATGCCATCCGTGTGCAGACCCCTCCTCGGCACATCC  958
            |||.||.|||.||||.|||||.|||.||||.|||||.|||||||||||.||.||||||||.||..|||||||.|
Sbjct  861  CGGAACTATGTTGGTGTGGAGCGAGCTGATAACTCCCCATGCCATCCGAGTCCAGACCCCGCCGAGGCACATTC  934

Query  959  CTGGTGTTGTGGAAGTCACACTGTCCTACAAATCTAAGCAGTTCTGCAAAGGAACACCAGGCAGATTCATTTAT  1032
            ||||.||.||.|||||.||.||.|||||||||||.|||||||||||||||||..|.||.||..|.||..|.||.
Sbjct  935  CTGGCGTCGTCGAAGTGACCCTCTCCTACAAATCCAAGCAGTTCTGCAAAGGTGCTCCTGGGCGCTTTGTCTAC  1008

Query 1033  ACAGCGCTCAACGAACCCACCATCGATTATGGTTTCCAGAGGTTACAGAAGGTCATTCCTCGGCACCCTGGTGA  1106
            ||.||.||.||.|||||.|||||.|||||.||.||.||||||||.|||||.||.||.||..|.||.||.|||||
Sbjct 1009  ACCGCCCTTAATGAACCAACCATAGATTACGGCTTTCAGAGGTTGCAGAAAGTGATCCCAAGACATCCGGGTGA  1082

Query 1107  CCCTG--AGCGTTGCCAAAGGAAGTAATACTCAAAAGGGCTGCGGATCTGGTAGAAGCACTGTATGGGATGCCA  1178
            .||.|  || |||.||.|||||.||..||||.||..||||.|||||.|||||.|||||..|.||.||.|||||.
Sbjct 1083  TCCCGAAAG-GTTACCCAAGGAGGTGTTACTGAAGCGGGCGGCGGACCTGGTGGAAGCCTTATACGGAATGCCT  1155

Query 1179  CACAACAACCAGGAAATCATTCTGAAGAGAGCGGCCGACATTGCCGAGGCCCTGTACAGTGTTCCCCGCAACCA  1252
            ||||||||||||||.|||||..|||||.|||||||.|||||.||||||||.||||||||.|||||||||||.||
Sbjct 1156  CACAACAACCAGGAGATCATCTTGAAGCGAGCGGCGGACATCGCCGAGGCGCTGTACAGCGTTCCCCGCAATCA  1229

Query 1253  CAACCAACTCCCGGCCCTTGCTAACACCTCGGTCCACGCAGGGATGATGGGCGTGAATTCGTTCAGTGGACAAC  1326
            ||||||..||||..||||.|..||||.|.|.|..|||.|.||.|||||||||||.||.||.|||||..|.||.|
Sbjct 1230  CAACCAGATCCCCACCCTGGGCAACAACCCTGCACACACGGGCATGATGGGCGTCAACTCCTTCAGCAGCCAGC  1303

Query 1327  TGGCCGTGAATGTCTCCGAGGCATCACAAGCC----ACCAA-TCAGGGTTTCACCCGCAACTCAAGCAGCGTAT  1395
            |.|||||.||.||.||.|||.|.|||||||||    ||||| ||  ||.|.||..|||||..||||||||||.|
Sbjct 1304  TAGCCGTCAACGTGTCAGAGACGTCACAAGCCAACGACCAAGTC--GGCTACAGTCGCAATACAAGCAGCGTGT  1375

Query 1396  CACCACACGGGTACGTGCCGAGCACCACTCCCCAGCAGACCAACTATAACTCCGTCACCACGAGCATGAACGGA  1469
            |.||.|..||.|||||.||.||||..||||||||||||.||||.||.|||.|.||||.|||.||||||||.|||
Sbjct 1376  CCCCGCGAGGCTACGTCCCCAGCAGTACTCCCCAGCAGTCCAATTACAACACAGTCAGCACTAGCATGAATGGA  1449

Query 1470  TACGGCTCTGCCGCAATGTCCAATTTGGGCGGCTCCCCCACCTTCCTCAACGGCTCAGCTGCCAACTCCCCCTA  1543
            ||.||...||.|||.|||.|||.|.|.|  ||.||||             .|||||..|||           .|
Sbjct 1450  TATGGAAGTGGCGCCATGGCCAGTCTAG--GGGTCCC-------------TGGCTCGCCTG-----------GA  1497

Query 1544  TGCCATAGTGCCATCCAGCCCCACCATGGCCTCCTCCAC-AAGCCTC-CCCTCCAACTGCAGCAGCTCCTCGGG  1615
            |..|.||                  |||| |||||||.| ||  ||| ||||   ||.|||             
Sbjct 1498  TTTCTTA------------------ATGG-CTCCTCCGCTAA--CTCTCCCT---ACGGCA-------------  1534

Query 1616  CATCTTCTCCTTCTCACCAGCCAACATGGTCTCAGCCGTGAAACAGAAGAGTGCTTTCGCACCAGTCGTCAGAC  1689
                                                  |||||||||||||.||.|||||.||.||.|||.|.|
Sbjct 1535  --------------------------------------TGAAACAGAAGAGCGCCTTCGCGCCCGTGGTCCGGC  1570

Query 1690  CCCAGACCTCCCCACCTCCCACCTGCACCAGCACCAACGGGAACAGCCTGCAAGCGATATCTGGCATGATTGTT  1763
            ||||..||||.||.|||||..|||||||||||.||||||||||..|.||||||||.||.|||||..||.|.||.
Sbjct 1571  CCCAAGCCTCTCCTCCTCCTTCCTGCACCAGCGCCAACGGGAATGGACTGCAAGCTATGTCTGGGCTGGTAGTC  1644

Query 1764  CCTCCTATG  1772
            ||.||.|||
Sbjct 1645  CCGCCAATG  1653

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