Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00537
Subject:
NM_001243744.1
Aligned Length:
1703
Identities:
1421
Gaps:
256

Alignment

Query    1  ATGGCTCAAGATTCAGTAGATCTTTCTTGTGATTATCAGTTTTGGATGCAGAAGCTTTCTGTATGGGATCAGGC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCTCAAGATTCAGTAGATCTTTCTTGTGATTATCAGTTTTGGATGCAGAAGCTTTCTGTATGGGATCAGGC  74

Query   75  TTCCACTTTGGAAACCCAGCAAGACACCTGTCTTCACGTGGCTCAGTTCCAGGAGTTCCTAAGGAAGATGTATG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TTCCACTTTGGAAACCCAGCAAGACACCTGTCTTCACGTGGCTCAGTTCCAGGAGTTCCTAAGGAAGATGTATG  148

Query  149  AAGCCTTGAAAGAGATGGATTCTAATACAGTCATTGAAAGATTCCCCACAATTGGTCAACTGTTGGCAAAAGCT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AAGCCTTGAAAGAGATGGATTCTAATACAGTCATTGAAAGATTCCCCACAATTGGTCAACTGTTGGCAAAAGCT  222

Query  223  TGTTGGAATCCTTTTATTTTAGCATATGATGAAAGCCAAAAAATTCTAATATGGTGCTTATGTTGTCTAATTAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGTTGGAATCCTTTTATTTTAGCATATGATGAAAGCCAAAAAATTCTAATATGGTGCTTATGTTGTCTAATTAA  296

Query  297  CAAAGAACCACAGAATTCTGGACAATCAAAACTTAACTCCTGGATACAGGGTGTATTATCTCATATACTTTCAG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CAAAGAACCACAGAATTCTGGACAATCAAAACTTAACTCCTGGATACAGGGTGTATTATCTCATATACTTTCAG  370

Query  371  CACTCAGATTTGATAAAGAAGTTGCTCTTTTCACTCAAGGTCTTGGGTATGCACCTATAGATTACTATCCTGGT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CACTCAGATTTGATAAAGAAGTTGCTCTTTTCACTCAAGGTCTTGGGTATGCACCTATAGATTACTATCCTGGT  444

Query  445  TTGCTTAAAAATATGGTTTTATCATTAGCGTCTGAACTCAGAGAGAATCATCTTAATGGATTTAACACTCAAAG  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTGCTTAAAAATATGGTTTTATCATTAGCGTCTGAACTCAGAGAGAATCATCTTAATGGATTTAACACTCAAAG  518

Query  519  GCGAATGGCTCCCGAGCGAGTGGCGTCCCTGTCACGAGTTTGTGTCCCACTTATTACCCTGACAGATGTTGACC  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCGAATGGCTCCCGAGCGAGTGGCGTCCCTGTCACGAGTTTGTGTCCCACTTATTACCCTGACAGATGTTGACC  592

Query  593  CCCTGGTGGAGGCTCTCCTCATCTGTCATGGACGTGAACCTCAGGAAATCCTCCAGCCAGAGTTCTTTGAGGCT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCCTGGTGGAGGCTCTCCTCATCTGTCATGGACGTGAACCTCAGGAAATCCTCCAGCCAGAGTTCTTTGAGGCT  666

Query  667  GTAAACGAGGCCATTTTGCTGAAGAAGATTTCTCTCCCCATGTCAGCTGTAGTCTGCCTCTGGCTTCGGCACCT  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GTAAACGAGGCCATTTTGCTGAAGAAGATTTCTCTCCCCATGTCAGCTGTAGTCTGCCTCTGGCTTCGGCACCT  740

Query  741  TCCCAGCCTTGAAAAAGCAATGCTGCATCTTTTTGAAAAGCTAATCTCCAGTGAGAGAAATTGTCTGAGAAGGA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCCCAGCCTTGAAAAAGCAATGCTGCATCTTTTTGAAAAGCTAATCTCCAGTGAGAGAAATTGTCTGAGAAGGA  814

Query  815  TCGAATGCTTTATAAAAGATTCATCGCTGCCTCAAGCAGCCTGCCACCCTGCCATATTCCGGGTTGTTGATGAG  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCGAATGCTTTATAAAAGATTCATCGCTGCCTCAAGCAGCCTGCCACCCTGCCATATTCCGGGTTGTTGATGAG  888

Query  889  ATGTTCAGGTGTGCACTCCTGGAAACCGATGGGGCCCTGGAAATCATAGCCACTATTCAGGTGTTTACGCAGTG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATGTTCAGGTGTGCACTCCTGGAAACCGATGGGGCCCTGGAAATCATAGCCACTATTCAGGTGTTTACGCAGTG  962

Query  963  CTTTGTAGAAGCTCTGGAGAAAGCAAGCAAGCAGCTGCGGTTTGCACTCAAGACCTACTTTCCTTACACTTCTC  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CTTTGTAGAAGCTCTGGAGAAAGCAAGCAAGCAGCTGCGGTTTGCACTCAAGACCTACTTTCCTTACACTTCTC  1036

Query 1037  CATCTCTTGCCATGGTGCTGCTGCAAGACCCTCAAGATATCCCTCGGGGACACTGGCTCCAGACACTGAAGCAT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CATCTCTTGCCATGGTGCTGCTGCAAGACCCTCAAGATATCCCTCGGGGACACTGGCTCCAGACACTGAAGCAT  1110

Query 1111  ATTTCTGAACTGCTCAGAGAAGCAGTTGAAGACCAGACTCATGGGTCCTGCGGAGGTCCCTTTGAGAGCTGGTT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATTTCTGAACTGCTCAGAGAAGCAGTTGAAGACCAGACTCATGGGTCCTGCGGAGGTCCCTTTGAGAGCTGGTT  1184

Query 1185  CCTGTTCATTCACTTCGGAGGATGGGCTGAGATGGTGGCAGAGCAATTACTGATGTCGGCAGCCGAACCCCCCA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CCTGTTCATTCACTTCGGAGGATGGGCTGAGATGGTGGCAGAGCAATTACTGATGTCGGCAGCCGAACCCCCCA  1258

Query 1259  CGGCCCTGCTGTGGCTCTTGGCCTTCTACTACGGCCCCCGTGATGGGAGGCAGCAGAGAGCACAGACTATGGTC  1332
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.| 
Sbjct 1259  CGGCCCTGCTGTGGCTCTTGGCCTTCTACTACGGCCCCCGTGATGGGAGGCAGCAGAGAGCACAGACTATGAT-  1331

Query 1333  CAGGTGAAGGCCGTGCTGGGCCACCTCCTGGCA-----ATGTCCAGAAGCAGCAGCCT----CTCAGCCCAGG-  1396
              ||...|.|.|.|    |||.||||.|.||||     ||.||         ||||||    .||||   ||| 
Sbjct 1332  --GGCATATGTCAT----GGCAACCTGCAGGCATGGTGATCTC---------CAGCCTTGTGGTCAG---AGGC  1387

Query 1397  ----ACCTG------CAGACGGTAGCAGGACAGGGCACAGACAC-AGAC-CTCAGAG------CTCCTGCACAA  1452
                .||||      |.|| |||.||           ||||.|| |||| ||...||      ||||||||.||
Sbjct 1388  GTTCTCCTGTCCCCACCGA-GGTGGC-----------CAGAGACGAGACGCTGCCAGCCCATTCTCCTGCAAAA  1449

Query 1453  CAGCTGATCAGGCACCTTC-TCCTCAACTTCCTGCTCTGGGCTCCTGGAGGCCACACGATCGCCTGGGATGTCA  1525
            |    ||  ||.| ||||| |||.|||..||.|.                                        
Sbjct 1450  C----GA--AGAC-CCTTCTTCCCCAAGGTCATT----------------------------------------  1476

Query 1526  TCACCCTGATGGCTCACACTGCTGAGATAACTCACGAGATCATTGGCTTTCTTGACCAGACCTTGTACAGATGG  1599
                                                                                      
Sbjct 1477  --------------------------------------------------------------------------  1476

Query 1600  AATCGTCTTGGCATTGAAAGCCCTAGATCAGAAAAACTGGCCCGAGAGCTCCTTAAAGAGCTGCGAACTCAAGT  1673
                                                                                      
Sbjct 1477  --------------------------------------------------------------------------  1476

Query 1674  C  1674
             
Sbjct 1477  -  1476

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