Nucleotide Global Alignment

Description

Query:
ccsbBroad304_01017
Subject:
NM_001178049.1
Aligned Length:
1549
Identities:
1080
Gaps:
329

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAGGCGCTTAGATTTGAGATGCTCATCCCCTGCTCCTTTGAAAGCTTGTGTCTCAGTTCTGCAGAGCATTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGGGGCCTCCAAGCCTCCGTTAAGCTCCTCCACTATGACATCACGCATCTTGCTACGCCAGCAACTCATGCGTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGCAGATGCAGGAGCAGGAGCGCAGGGAGCAGCAGCAGAAGCTGCAGGCAGCCCAGTTCATGCAACAGAGAGTG  222

Query    1  ---------------------------------------------------------------ATGC---TGGA  8
                                                                           .|||   ||||
Sbjct  223  GCCGTGAGTCAGACACCAGCCATAAACGTCAGCGTGCCCACCACCCTTCCCTCTGCCACCCAGGTGCCGATGGA  296

Query    9  AATGCTAGAATATAATCACTATCAGGTGCAGACCCACCTCGAAAACCCCACCAAGTACCACATACAGCAAGCCC  82
            |.|.||               |.||||||||||||||||.||||||||||||||||||||||||||||||||.|
Sbjct  297  AGTCCT---------------TAAGGTGCAGACCCACCTGGAAAACCCCACCAAGTACCACATACAGCAAGCTC  355

Query   83  AACGGCAGCAGGTAAAGCAGTACCTTTCTACCACTTTAGCAAATAAACATGCCAACCAAGTCCTGAGCTTGCCA  156
            |..||||.||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||..|||
Sbjct  356  AGAGGCACCAGGTAAAGCAGTACCTTTCTACCACTTTAGCAAATAAACATGCCAGCCAAGTCCTGAGCTCACCA  429

Query  157  TGTCCAAACCAGCCTGGCGATCATGTCATGCCACCGGTGCCGGGGAGCAGCGCACCCAACAGCCCCATGGCTAT  230
            ||||||||||||||||||||.||||.|||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct  430  TGTCCAAACCAGCCTGGCGACCATGCCATGCCACCAGTGCCGGGGAGCAGCGCACCCAACAGCCCTATGGCTAT  503

Query  231  GCTTACGCTTAACTCCAACTGTGAAAAAGAGGGATTTTATAAGTTTGAAGAGCAAAACAGGGCAGAGAGCGAGT  304
            |||.||.|||||||||||||||||||||||||.|||||||||||||||.|||||.|.||||||||||||.||||
Sbjct  504  GCTCACTCTTAACTCCAACTGTGAAAAAGAGGCATTTTATAAGTTTGAGGAGCAGAGCAGGGCAGAGAGTGAGT  577

Query  305  GCCCAGGCATGAACACACATTCACGAGCGTCCTGTATGCAGATGGATGATGTAATCGATGACATCATTAGCCTA  378
            |||||||.||||||||.||.||.||||||||.||.||||||||||||||||||||.|||||||||||.|||||.
Sbjct  578  GCCCAGGTATGAACACGCACTCTCGAGCGTCGTGCATGCAGATGGATGATGTAATTGATGACATCATCAGCCTG  651

Query  379  GAATCAAGTTATAATGAGGAAATCTTGGGCTTGATGGATCCTGCTTTGCAAATGGCAAATACGTTGCCTGTCTC  452
            |||||||||||||||||.|||||.|||||||||||||||||.||.||||||||||||||||||||.||.|||||
Sbjct  652  GAATCAAGTTATAATGAAGAAATTTTGGGCTTGATGGATCCGGCCTTGCAAATGGCAAATACGTTACCCGTCTC  725

Query  453  GGGAAACTTGATTGATCTTTATGGAAACCAAGGTCTGCCCCCACCAGGCCTCACCATCAGCAACTCCTGTCCAG  526
            .|||||||||||.||.||.||..|.|||||.||.|||||.||.||||||||.||||||||||||||||||||||
Sbjct  726  TGGAAACTTGATCGACCTCTACAGCAACCAGGGCCTGCCACCGCCAGGCCTTACCATCAGCAACTCCTGTCCAG  799

Query  527  CCAACCTTCCCAACATAAAAAGGGAGCT------------------CACAGAGTCTGAAGCAAGAGCACTGGCC  582
            ||||||||||||||||||||||||||||                  ||||||||||||||||||||||.||||.
Sbjct  800  CCAACCTTCCCAACATAAAAAGGGAGCTCACAGCGTGTATTTTCCCCACAGAGTCTGAAGCAAGAGCATTGGCT  873

Query  583  AAAGAGAGGCAGAAAAAGGACAATCACAACCTGATTGAACGAAGAAGAAGATTTAACATAAATGACCGCATTAA  656
            ||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||.|||||||||||
Sbjct  874  AAAGAGAGGCAGAAAAAGGACAATCACAACTTGATTGAACGAAGAAGAAGATTTAACATAAACGACCGCATTAA  947

Query  657  AGAACTAGGTACTTTGATTCCCAAGTCAAATGATCCAGACATGCGCTGGAACAAGGGAACCATCTTAAAAGCAT  730
            .||.|||||||||.||||.||||||||||||||||||||||||||.|||||||||||||||||..|.||.||.|
Sbjct  948  GGAGCTAGGTACTCTGATCCCCAAGTCAAATGATCCAGACATGCGGTGGAACAAGGGAACCATTCTCAAGGCCT  1021

Query  731  CCGTGGACTATATCCGAAAGTTGCAACGAGAACAGCAACGCGCAAAAGAACTTGAAAACCGACAGAAGAAACTG  804
            |.||||||||.|||||.|||||||||||.|||||||||||.||.||.||.||||||||||||||||||||.|||
Sbjct 1022  CTGTGGACTACATCCGGAAGTTGCAACGGGAACAGCAACGAGCTAAGGACCTTGAAAACCGACAGAAGAAGCTG  1095

Query  805  GAGCACGCCAACCGGCATTTGTTGCTCAGAATACAGGAACTTGAAATGCAGGCTCGAGCTCATGGACTTTCCCT  878
            |||||.||.||||||||..||.||||||||.|||||||.||.||.|||||||||.||||.||||||||||||||
Sbjct 1096  GAGCATGCGAACCGGCACCTGCTGCTCAGAGTACAGGAGCTGGAGATGCAGGCTAGAGCGCATGGACTTTCCCT  1169

Query  879  TATTCCATCCACGGGTCTCTGCTCTCCAGATTTGGTGAATCGGATCATCAAGCAAGAACCCGTTCTTGAGAACT  952
            |||.||||||||.|||||||||||.||.|||.||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1170  TATCCCATCCACCGGTCTCTGCTCGCCTGATCTGGTGAATCGGATCATCAAGCAAGAACCAGTTCTTGAGAACT  1243

Query  953  GCAGCCAAGACCTCCTTCAGCATCATGCAGACCTAACCTGTACAACAACTCTCGATCTCACGGATGGCACCATC  1026
            |||||||.||.||..|.|||||.||.||||||||.||.|||||.||||||||.|||||||||||.||.||||||
Sbjct 1244  GCAGCCAGGAACTTGTACAGCACCAGGCAGACCTGACATGTACGACAACTCTGGATCTCACGGACGGTACCATC  1317

Query 1027  ACCTTCAACAACAACCTCGGAAC--TG--GGACTGAGGCCAACCAAGCCTATAGTGTCCCCACAAAAATGGGAT  1096
            |||||.|.||||||||||||.||  ||  |||  |||  ||.||..|||||.||..||||||..||.|||||.|
Sbjct 1318  ACCTTTACCAACAACCTCGGCACCATGCCGGA--GAG--CAGCCCGGCCTACAGCATCCCCAGGAAGATGGGCT  1387

Query 1097  CCAAACTGGAAGACATCCTGATGGACGACACCCTTTCTCCCGTCGGTGTCACTGATCCACTCCTTTCCTCAGTG  1170
            ||||..||||||||||||||||||||||..||||.||.||.||.||.|||||.||.|||||.||.||.||||||
Sbjct 1388  CCAACTTGGAAGACATCCTGATGGACGATGCCCTCTCACCTGTTGGAGTCACCGACCCACTGCTGTCATCAGTG  1461

Query 1171  TCCCCCGGAGCTTCCAAAACAAGCAGCCGGAGGAGCAGTATGAGCATGGAAGAGACGGAGCACACTTGT  1239
            ||.||.||||||||.||||||||||||||||||||||||||||||...|||||.||||||||..|.|||
Sbjct 1462  TCGCCAGGAGCTTCAAAAACAAGCAGCCGGAGGAGCAGTATGAGCGCAGAAGAAACGGAGCATGCGTGT  1530

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