Nucleotide Global Alignment

Description

Query:
ccsbBroad304_01087
Subject:
NM_001252253.1
Aligned Length:
1676
Identities:
1317
Gaps:
193

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAAATGGAAGGGGAAGGACCTGTTTGATTTGGTGTGCCGGACACTGGGGCTTCGGGAAACCTGGTTCTTTGG  74

Query    1  ----------------ATGG---CCGGGGCCATCGCTTCCCGCATG-------AGCT------TCA-GCTCTCT  41
                            |.||   |.|.|||| |.|||  |...|||       ||.|      ||| |.|.|.|
Sbjct   75  ACTGCAGTATACAATCAAGGACACGGTGGCC-TGGCT--CAAAATGGACAAGAAGGTGTTGGATCATGATGTTT  145

Query   42  CAAGAGGAAGCAACCCAAG---ACGTTCAC--CGTGAGG---------ATCGTCACCATG--GACGCCGAGATG  99
            |.| |||||| ||||  ||   .|.|||||  |.|  ||         |||.|.|..|||  ||.|..|||.| 
Sbjct  146  CGA-AGGAAG-AACC--AGTTACCTTTCACTTCCT--GGCCAAATTTTATCCTGAAAATGCTGAGGAGGAGCT-  212

Query  100  GAGTTCAA------------------------TTGCGAGGTAAAGAAGCAGATTTTAGATGAAAAGATCTACTG  149
             |||||||                        ||.| ||||.||||||||||||||.|||||||||.|||||||
Sbjct  213  -AGTTCAAGAGATCACGCAACACTTATTTTTCTTAC-AGGTGAAGAAGCAGATTTTGGATGAAAAGGTCTACTG  284

Query  150  CCCTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAGGCCAAGTATGGTGACTACGACCCCAGTGTTC  223
            ||||||.|||||.||.||||||.||||.||.||.||.|||||||||||||||||.|||||.||||||..|||.|
Sbjct  285  CCCTCCCGAGGCGTCCGTGCTCTTGGCGTCATATGCTGTCCAGGCCAAGTATGGCGACTATGACCCCTCTGTGC  358

Query  224  ACAAGCGGGGATTTTTGGCCCAAGAGGAATTGCTTCCAAAAAGGGTAATAAATCTGTATCAGATGACTCCGGAA  297
            ||||||||||||||||.|||||||||||||||||.||.||||||||.||||||||.||||||||||||||||||
Sbjct  359  ACAAGCGGGGATTTTTAGCCCAAGAGGAATTGCTCCCGAAAAGGGTGATAAATCTCTATCAGATGACTCCGGAA  432

Query  298  ATGTGGGAGGAGAGAATTACTGCTTGGTACGCAGAGCACCGAGGCCGAGCCAGGGATGAAGCTGAAATGGAATA  371
            ||||||||||||||||||||.||||||||.||.||||||||.|||.|||||||||||||||||||||||||.||
Sbjct  433  ATGTGGGAGGAGAGAATTACGGCTTGGTATGCGGAGCACCGGGGCAGAGCCAGGGATGAAGCTGAAATGGAGTA  506

Query  372  TCTGAAGATAGCTCAGGACCTGGAGATGTACGGTGTGAACTACTTTGCAATCCGGAATAAAAAGGGCACAGAGC  445
            |.||||||||||||||||||||||||||||.|||||||||||||||.||||||||||||||||||||||||||.
Sbjct  507  TTTGAAGATAGCTCAGGACCTGGAGATGTATGGTGTGAACTACTTTACAATCCGGAATAAAAAGGGCACAGAGT  580

Query  446  TGCTGCTTGGAGTGGATGCCCTGGGGCTTCACATTTATGACCCTGAGAACAGACTGACCCCCAAGATCTCCTTC  519
            |||||||||||||||||||.||.||||||||.||.|||||||||||||||||.|||||||||||||||||||||
Sbjct  581  TGCTGCTTGGAGTGGATGCTCTTGGGCTTCATATCTATGACCCTGAGAACAGGCTGACCCCCAAGATCTCCTTC  654

Query  520  CCGTGGAATGAAATCCGAAACATCTCGTACAGTGACAAGGAGTTTACTATTAAACCACTGGATAAGAAAATTGA  593
            ||.|||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct  655  CCATGGAATGAAATCCGAAACATCTCCTACAGCGACAAGGAGTTTACTATTAAACCACTGGATAAGAAAATTGA  728

Query  594  TGTCTTCAAGTTTAACTCCTCAAAGCTTCGTGTTAATAAGCTGATTCTCCAGCTATGTATCGGGAACCATGATC  667
            |||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||.|
Sbjct  729  TGTCTTCAAATTTAACTCCTCAAAGCTTCGTGTTAATAAGCTGATTCTTCAGCTATGTATTGGGAACCATGACC  802

Query  668  TATTTATGAGGAGAAGGAAAGCCGATTCTTTGGAAGTTCAGCAGATGAAAGCCCAGGCCAGGGAGGAGAAGGCT  741
            |||||||||||.||.|||||||.||.|||||.||||||||||||||||||||||||||||||||.|||||||||
Sbjct  803  TATTTATGAGGCGACGGAAAGCTGACTCTTTAGAAGTTCAGCAGATGAAAGCCCAGGCCAGGGAAGAGAAGGCT  876

Query  742  AGAAAGCAGATGGAGCGGCAGCGCCTCGCTCGAGAGAAGCAGATGAGGGAGGAGGCTGAACGCACGAGGGATGA  815
            ||||||||||||||..|||||||.||.||||||||||||||||||.||||||||||.||.||.||.||.|||||
Sbjct  877  AGAAAGCAGATGGAAAGGCAGCGGCTGGCTCGAGAGAAGCAGATGCGGGAGGAGGCCGAGCGTACAAGAGATGA  950

Query  816  GTTGGAGAGGAGGCTGCTGCAGATGAAAGAAGAAGCAACAATGGCCAACGAAGCACTGATGCGGTCTGAGGAGA  889
            |||.|||||||||||.|||||||||||||||||||||||.||||||||.|||||.||||||||.||||||||||
Sbjct  951  GTTAGAGAGGAGGCTCCTGCAGATGAAAGAAGAAGCAACGATGGCCAATGAAGCTCTGATGCGCTCTGAGGAGA  1024

Query  890  CAGCTGACCTGTTGGCTGAAAAGGCCCAGATCACCGAGGAGGAGGCAAAACTTCTGGCCCAGAAGGCCGCAGAG  963
            |||||||.|||||||||||||||||.||||||||.|||||||||||.||.|||.||||.||.|||||.||||||
Sbjct 1025  CAGCTGATCTGTTGGCTGAAAAGGCTCAGATCACAGAGGAGGAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAG  1098

Query  964  GCTGAGCAGGAAATGCAGCGCATCAAGGCCACAGCGATTCGCACGGAGGAGGAGAAGCGCCTGATGGAGCAGAA  1037
            ||||||||.||.||||||||.|||||||||||.||.|||||.||.|||||||||||||||||||||||||||||
Sbjct 1099  GCTGAGCAAGAGATGCAGCGAATCAAGGCCACGGCCATTCGGACAGAGGAGGAGAAGCGCCTGATGGAGCAGAA  1172

Query 1038  GGTGCTGGAAGCCGAGGTGCTGGCACTGAAGATGGCTGAGGAGTCAGAGAGGAGGGCCAAAGAGGCAGATCAGC  1111
            |||||||||.||.||.|||||||||.||||||||||||||||||||||||||||||||||.|||||.||||||.
Sbjct 1173  GGTGCTGGAGGCTGAAGTGCTGGCATTGAAGATGGCTGAGGAGTCAGAGAGGAGGGCCAAGGAGGCTGATCAGT  1246

Query 1112  TGAAGCAGGACCTGCAGGAAGCACGCGAGGCGGAGCGAAGAGCCAAGCAGAAGCTCCTGGAGATTGCCACCAAG  1185
            |.|||||.|||.||||.|||||..|.||.||.||||||||||||||||||||||||.|.||.||.|||||||||
Sbjct 1247  TAAAGCAAGACTTGCAAGAAGCCAGAGAAGCAGAGCGAAGAGCCAAGCAGAAGCTCTTAGAAATCGCCACCAAG  1320

Query 1186  CCCACGTACCCGCCCATGAACCCAATTCCAGCACCGTTGCCTCCTGACATACCAAGCTTCAACCTCATTGGTGA  1259
            |||||.||.||.||||||||||||||||||.||||..||||||||||||||||.||||||.||.|.||||.|||
Sbjct 1321  CCCACCTATCCACCCATGAACCCAATTCCACCACCACTGCCTCCTGACATACCGAGCTTCGACATTATTGCTGA  1394

Query 1260  CAGCCTGTCTTTCGACTTCAAAGATACTGACATGAAGCGGCTTTCCATGGAGATAGAGAAAGAAAAAGTGGAAT  1333
            ||||.||||.||.||||||||.|||||.|||||||||||.||||||||||||||||||||||||||||||||.|
Sbjct 1395  CAGCTTGTCATTTGACTTCAAGGATACGGACATGAAGCGACTTTCCATGGAGATAGAGAAAGAAAAAGTGGAGT  1468

Query 1334  ACATGGAAAAGAGCAAGCATCTGCAGGAGCAGCTCAATGAACTCAAGACAGAAATCGAGGCCTTGAAACTGAAA  1407
            |||||||.|||||||||||.|||||||||||||||||.||.||||||||.||.|||||||||||||||||.|||
Sbjct 1469  ACATGGAGAAGAGCAAGCACCTGCAGGAGCAGCTCAACGAGCTCAAGACGGAGATCGAGGCCTTGAAACTCAAA  1542

Query 1408  GAGAGGGAGACAGCTCTGGATATTCTGCACAATGAGAACTCCGACAGGGGTGG---CAGCAGCAAGCACAATAC  1478
            |||.|||||||.||..||||..|.||.||||..||||.|||.|||||.||.||   ||||||||||||.|||||
Sbjct 1543  GAGCGGGAGACGGCCTTGGACGTCCTACACAGCGAGAGCTCAGACAGAGGCGGCCCCAGCAGCAAGCATAATAC  1616

Query 1479  CATTAAAAAG---CCTCAA--GCCCAAGGCAGAAGACCTATCTGCATT  1521
            ||||||||||   |||.||  |                          
Sbjct 1617  CATTAAAAAGGTACCTGAAATG--------------------------  1638

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