Nucleotide Global Alignment

Description

Query:
ccsbBroad304_01087
Subject:
XM_017314335.1
Aligned Length:
1773
Identities:
1246
Gaps:
387

Alignment

Query    1  ATGGCCGGGGCCATCGCTTCCCGCATGAGCTTCAGCTCTCTCAAGAGGAAGCAACCCAAGACGTTCACCGTGAG  74
            ||||||||.|||||||||||.|||||||||||||||||.||||||||||||||.||||||||.|||||.|||.|
Sbjct    1  ATGGCCGGAGCCATCGCTTCTCGCATGAGCTTCAGCTCACTCAAGAGGAAGCAGCCCAAGACATTCACGGTGCG  74

Query   75  GATCGTCACCATGGACGCCGAGATGGAGTTCAATTGCG------------------------------------  112
            |||||||||||||||||||||||||||||||||.||||                                    
Sbjct   75  GATCGTCACCATGGACGCCGAGATGGAGTTCAACTGCGAGATGAAATGGAAGGGGAAGGACCTGTTTGATTTGG  148

Query  113  --------------------------------------------------------------------------  112
                                                                                      
Sbjct  149  TGTGCCGGACACTGGGGCTTCGGGAAACCTGGTTCTTTGGACTGCAGTATACAATCAAGGACACGGTGGCCTGG  222

Query  113  --------------------------------------------------------------------------  112
                                                                                      
Sbjct  223  CTCAAAATGGACAAGAAGGTGTTGGATCATGATGTTTCGAAGGAAGAACCAGTTACCTTTCACTTCCTGGCCAA  296

Query  113  -----------------------------------------------------------------AGGTAAAGA  121
                                                                             ||||.||||
Sbjct  297  ATTTTATCCTGAAAATGCTGAGGAGGAGCTAGTTCAAGAGATCACGCAACACTTATTTTTCTTACAGGTGAAGA  370

Query  122  AGCAGATTTTAGATGAAAAGATCTACTGCCCTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAGGCC  195
            ||||||||||.|||||||||.|||||||||||||.|||||.||.||||||.||||.||.||.||.|||||||||
Sbjct  371  AGCAGATTTTGGATGAAAAGGTCTACTGCCCTCCCGAGGCGTCCGTGCTCTTGGCGTCATATGCTGTCCAGGCC  444

Query  196  AAGTATGGTGACTACGACCCCAGTGTTCACAAGCGGGGATTTTTGGCCCAAGAGGAATTGCTTCCAAAAAGGGT  269
            ||||||||.|||||.||||||..|||.|||||||||||||||||.|||||||||||||||||.||.||||||||
Sbjct  445  AAGTATGGCGACTATGACCCCTCTGTGCACAAGCGGGGATTTTTAGCCCAAGAGGAATTGCTCCCGAAAAGGGT  518

Query  270  AATAAATCTGTATCAGATGACTCCGGAAATGTGGGAGGAGAGAATTACTGCTTGGTACGCAGAGCACCGAGGCC  343
            .||||||||.||||||||||||||||||||||||||||||||||||||.||||||||.||.||||||||.|||.
Sbjct  519  GATAAATCTCTATCAGATGACTCCGGAAATGTGGGAGGAGAGAATTACGGCTTGGTATGCGGAGCACCGGGGCA  592

Query  344  GAGCCAGGGATGAAGCTGAAATGGAATATCTGAAGATAGCTCAGGACCTGGAGATGTACGGTGTGAACTACTTT  417
            |||||||||||||||||||||||||.|||.||||||||||||||||||||||||||||.|||||||||||||||
Sbjct  593  GAGCCAGGGATGAAGCTGAAATGGAGTATTTGAAGATAGCTCAGGACCTGGAGATGTATGGTGTGAACTACTTT  666

Query  418  GCAATCCGGAATAAAAAGGGCACAGAGCTGCTGCTTGGAGTGGATGCCCTGGGGCTTCACATTTATGACCCTGA  491
            .|||||||                                                                  
Sbjct  667  ACAATCCG------------------------------------------------------------------  674

Query  492  GAACAGACTGACCCCCAAGATCTCCTTCCCGTGGAATGAAATCCGAAACATCTCGTACAGTGACAAGGAGTTTA  565
                                                                                 |||||
Sbjct  675  ---------------------------------------------------------------------GTTTA  679

Query  566  CTATTAAACCACTGGATAAGAAAATTGATGTCTTCAAGTTTAACTCCTCAAAGCTTCGTGTTAATAAGCTGATT  639
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  680  CTATTAAACCACTGGATAAGAAAATTGATGTCTTCAAATTTAACTCCTCAAAGCTTCGTGTTAATAAGCTGATT  753

Query  640  CTCCAGCTATGTATCGGGAACCATGATCTATTTATGAGGAGAAGGAAAGCCGATTCTTTGGAAGTTCAGCAGAT  713
            ||.|||||||||||.|||||||||||.||||||||||||.||.|||||||.||.|||||.||||||||||||||
Sbjct  754  CTTCAGCTATGTATTGGGAACCATGACCTATTTATGAGGCGACGGAAAGCTGACTCTTTAGAAGTTCAGCAGAT  827

Query  714  GAAAGCCCAGGCCAGGGAGGAGAAGGCTAGAAAGCAGATGGAGCGGCAGCGCCTCGCTCGAGAGAAGCAGATGA  787
            ||||||||||||||||||.|||||||||||||||||||||||..|||||||.||.||||||||||||||||||.
Sbjct  828  GAAAGCCCAGGCCAGGGAAGAGAAGGCTAGAAAGCAGATGGAAAGGCAGCGGCTGGCTCGAGAGAAGCAGATGC  901

Query  788  GGGAGGAGGCTGAACGCACGAGGGATGAGTTGGAGAGGAGGCTGCTGCAGATGAAAGAAGAAGCAACAATGGCC  861
            ||||||||||.||.||.||.||.||||||||.|||||||||||.|||||||||||||||||||||||.||||||
Sbjct  902  GGGAGGAGGCCGAGCGTACAAGAGATGAGTTAGAGAGGAGGCTCCTGCAGATGAAAGAAGAAGCAACGATGGCC  975

Query  862  AACGAAGCACTGATGCGGTCTGAGGAGACAGCTGACCTGTTGGCTGAAAAGGCCCAGATCACCGAGGAGGAGGC  935
            ||.|||||.||||||||.|||||||||||||||||.|||||||||||||||||.||||||||.|||||||||||
Sbjct  976  AATGAAGCTCTGATGCGCTCTGAGGAGACAGCTGATCTGTTGGCTGAAAAGGCTCAGATCACAGAGGAGGAGGC  1049

Query  936  AAAACTTCTGGCCCAGAAGGCCGCAGAGGCTGAGCAGGAAATGCAGCGCATCAAGGCCACAGCGATTCGCACGG  1009
            .||.|||.||||.||.|||||.||||||||||||||.||.||||||||.|||||||||||.||.|||||.||.|
Sbjct 1050  CAAGCTTTTGGCACAAAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACGGCCATTCGGACAG  1123

Query 1010  AGGAGGAGAAGCGCCTGATGGAGCAGAAGGTGCTGGAAGCCGAGGTGCTGGCACTGAAGATGGCTGAGGAGTCA  1083
            |||||||||||||||||||||||||||||||||||||.||.||.|||||||||.||||||||||||||||||||
Sbjct 1124  AGGAGGAGAAGCGCCTGATGGAGCAGAAGGTGCTGGAGGCTGAAGTGCTGGCATTGAAGATGGCTGAGGAGTCA  1197

Query 1084  GAGAGGAGGGCCAAAGAGGCAGATCAGCTGAAGCAGGACCTGCAGGAAGCACGCGAGGCGGAGCGAAGAGCCAA  1157
            ||||||||||||||.|||||.||||||.|.|||||.|||.||||.|||||..|.||.||.||||||||||||||
Sbjct 1198  GAGAGGAGGGCCAAGGAGGCTGATCAGTTAAAGCAAGACTTGCAAGAAGCCAGAGAAGCAGAGCGAAGAGCCAA  1271

Query 1158  GCAGAAGCTCCTGGAGATTGCCACCAAGCCCACGTACCCGCCCATGAACCCAATTCCAGCACCGTTGCCTCCTG  1231
            ||||||||||.|.||.||.||||||||||||||.||.||.||||||||||||||||||.||||..|||||||||
Sbjct 1272  GCAGAAGCTCTTAGAAATCGCCACCAAGCCCACCTATCCACCCATGAACCCAATTCCACCACCACTGCCTCCTG  1345

Query 1232  ACATACCAAGCTTCAACCTCATTGGTGACAGCCTGTCTTTCGACTTCAAAGATACTGACATGAAGCGGCTTTCC  1305
            |||||||.||||||.||.|.||||.|||||||.||||.||.||||||||.|||||.|||||||||||.||||||
Sbjct 1346  ACATACCGAGCTTCGACATTATTGCTGACAGCTTGTCATTTGACTTCAAGGATACGGACATGAAGCGACTTTCC  1419

Query 1306  ATGGAGATAGAGAAAGAAAAAGTGGAATACATGGAAAAGAGCAAGCATCTGCAGGAGCAGCTCAATGAACTCAA  1379
            ||||||||||||||||||||||||||.||||||||.|||||||||||.|||||||||||||||||.||.|||||
Sbjct 1420  ATGGAGATAGAGAAAGAAAAAGTGGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGCAGCTCAACGAGCTCAA  1493

Query 1380  GACAGAAATCGAGGCCTTGAAACTGAAAGAGAGGGAGACAGCTCTGGATATTCTGCACAATGAGAACTCCGACA  1453
            |||.||.|||||||||||||||||.||||||.|||||||.||..||||..|.||.||||..||||.|||.||||
Sbjct 1494  GACGGAGATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGGCCTTGGACGTCCTACACAGCGAGAGCTCAGACA  1567

Query 1454  GGGGTGG---CAGCAGCAAGCACAATACCATTAAAAAGCCTCAAGCCCAAGGCAGAAGACCTATCTGCATT  1521
            |.||.||   ||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568  GAGGCGGCCCCAGCAGCAAGCATAATACCATTAAAAAGCCTCAAGCCCAAGGCAGAAGACCTATCTGCATT  1638

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.