Nucleotide Global Alignment

Description

Query:
ccsbBroad304_01285
Subject:
NM_001013833.3
Aligned Length:
2093
Identities:
1795
Gaps:
115

Alignment

Query    1  ATGGGC-------------ACCTTGCG-GGATTTACAGTACGCGCTC---CAGGAGAAGATCGAGGAGCTGAGG  57
            |||.||             ||.||||| .||||..||     .||||   .||||||.||||.|.||||||..|
Sbjct    1  ATGAGCGAACTGGAGGAAGACTTTGCGAAGATTCTCA-----TGCTCAAGGAGGAGAGGATCAAAGAGCTGGAG  69

Query   58  CAGCGGGATGCTCTCATCGACGAGCTGGAGCTGGAGTTGGATCAGAAGGACGAACTGATCCAGAAGCTGCAGAA  131
            .||||    |||.|||                          .|||||||.|||...||||||.|||||.|||.
Sbjct   70  AAGCG----GCTGTCA--------------------------GAGAAGGAGGAAGAAATCCAGGAGCTGAAGAG  113

Query  132  CGAGCTGGACAAGTACCGCTCGGTGAT-CCG--ACCAGCCACCCAGCAGGCGCAGAAGCAGAGCGCGAGCACCT  202
            ..|.||..||||.|.||..||||||.| |||  .||..|||||||                        ||.| 
Sbjct  114  GAAACTCCACAAATGCCAGTCGGTGCTGCCGGTGCCCTCCACCCA------------------------CATC-  162

Query  203  TGCAGGGCGAGCCGCGCACCAAGCG---GCAGGCGATCTCCGCCGAGCC-CACCG-CCTTCGACA------TCC  265
                 |||   |||||.||||..||   |||||..||||||||.||||| ||  | |||   |||      |||
Sbjct  163  -----GGC---CCGCGGACCACCCGGGCGCAGGGCATCTCCGCGGAGCCGCA--GACCT---ACAGGTCCTTCC  223

Query  266  AGGATCTCAGCCATGTGACCCTGCCCTTCTAC----CCCAAGAGCCCACAGTCCAAGGATCTTATAAAGGAAGC  335
            |.||.||..||||.|.|..||.|...||| ||    .||.||||      |||.||||||||.||||||||.||
Sbjct  224  ACGACCTGCGCCAGGCGTTCCGGAAGTTC-ACTAAATCCGAGAG------GTCGAAGGATCTCATAAAGGAGGC  290

Query  336  TATCCTTGACAATGACTTTATGAAGAACTTGGAGCTGTCGCAGATCCAGGAGATTGTGGATTGTATGTACCCGG  409
            ||||||||||||||||||.||||||||||||||||||||.||||||||||||||||||||.|||||||||||.|
Sbjct  291  TATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCG  364

Query  410  TGGAGTATGGCAAGGACAGTTGCATCATCAAAGAAGGAGACGTGGGGTCACTGGTGTATGTCATGGAAGATGGT  483
            ||||.||.|||||||||||.|||||||||||.|||||.||.|||||||||||||||||.||||||||||||||.
Sbjct  365  TGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAGATGGG  438

Query  484  AAGGTTGAAGTTACAAAAGAAGGTGTGAAGTTGTGTACCATGGGTCCAGGAAAAGTGTTTGGGGAATTGGCTAT  557
            |||||||||||.|||||||||||.||||||.|.||.|||||||||||.|||||||||||.|||||..|||||||
Sbjct  439  AAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTAT  512

Query  558  TCTTTACAACTGTACCCGGACAGCGACCGTCAAGACTCTTGTAAATGTAAAACTCTGGGCCATTGATCGACAAT  631
            .|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||||
Sbjct  513  ACTTTACAACTGTACCCGGACAGCGACCGTCAAGACTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAAT  586

Query  632  GTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTATATGGAATTTTTAAAAAGCGTTCCA  705
            |||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||
Sbjct  587  GTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGTGTTCCA  660

Query  706  ACATTCCAGAGCCTTCCTGAAGAGATCCTCAGCAAGCTTGCTGATGTCCTTGAAGAGACCCACTATGAAAATGG  779
            ||||||||||||||||||||.||.||||||||||||||.|||||||||||.|||||||||||||||||||||||
Sbjct  661  ACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGACCCACTATGAAAATGG  734

Query  780  AGAATATATTATCAGGCAAGGTGCAAGAGGGGACACCTTCTTTATCATCAGCAAAGGAACGGTAAATGTCACTC  853
            |||||||||.||||||||.|||||||||||.|||||||||||.||||||||.|||||...|||.|||||.||||
Sbjct  735  AGAATATATCATCAGGCAGGGTGCAAGAGGAGACACCTTCTTCATCATCAGTAAAGGGCAGGTGAATGTTACTC  808

Query  854  GTGAAGACTCACCGAGTGAAGACCCAGTCTTTCTTAGAACTTTAGGAAAAGGAGACTGGTTTGGAGAGAAAGCC  927
            |.|||||||||||.|||||||||||||||||.||||||||||||||.||.|||||.|||||||||||||||||.
Sbjct  809  GAGAAGACTCACCAAGTGAAGACCCAGTCTTCCTTAGAACTTTAGGGAAGGGAGATTGGTTTGGAGAGAAAGCG  882

Query  928  TTGCAGGGGGAAGATGTGAGAACAGCAAACGTAATTGCTGCAGAAGCTGTAACCTGCCTTGTGATTGACAGAGA  1001
            |||||||||||.|||||||||||||||||.||.|||||.|||||||||||.|||||||||||||||||||||||
Sbjct  883  TTGCAGGGGGAGGATGTGAGAACAGCAAATGTTATTGCCGCAGAAGCTGTCACCTGCCTTGTGATTGACAGAGA  956

Query 1002  CTCTTTTAAACATTTGATTGGAGGGCTGGATGATGTTTCTAATAAAGCATATGAAGATGCAGAAGCTAAAGCAA  1075
            ||||||.||.||||||||||||||.|||||.|||||||||||.|||||||||||.||.||||||||.|||||||
Sbjct  957  CTCTTTCAAGCATTTGATTGGAGGACTGGACGATGTTTCTAACAAAGCATATGAGGACGCAGAAGCAAAAGCAA  1030

Query 1076  AATATGAAGCTGAAGCGGCTTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGATACCCTTGGAGTT  1149
            ||||||||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 1031  AATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTT  1104

Query 1150  GGAGGTTTCGGACGAGTAGAACTGGTCCAGTTGAAAAGTGAAGAATCCAAAACGTTTGCAATGAAGATTCTCAA  1223
            ||||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||||||||.|||||
Sbjct 1105  GGAGGTTTCGGACGAGTAGAGCTGGTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAA  1178

Query 1224  GAAACGTCACATTGTGGACACAAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATT  1297
            ||||||.||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  GAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATT  1252

Query 1298  CCGATTTCATAGTGAGACTGTACAGAACATTTAAGGACAGCAAATATTTGTATATGTTGATGGAAGCTTGTCTA  1371
            |.||.|||||.|||||.||||||||.||||||||.|||||||||||.||||||||||||||||||||.||.||.
Sbjct 1253  CTGACTTCATTGTGAGGCTGTACAGGACATTTAAAGACAGCAAATACTTGTATATGTTGATGGAAGCGTGCCTG  1326

Query 1372  GGTGGAGAGCTCTGGACCATTCTCAGGGATAGAGGTTCGTTTGAAGATTCTACAACCAGATTTTACACAGCATG  1445
            |||||||||||||||||.||||||||||||||.||||||||||||||.||.||||||||.||||||||.|||||
Sbjct 1327  GGTGGAGAGCTCTGGACTATTCTCAGGGATAGGGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATG  1400

Query 1446  TGTGGTAGAAGCTTTTGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCAGAAAATCTCATCC  1519
            ||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||
Sbjct 1401  TGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCC  1474

Query 1520  TAGATCACCGAGGTTATGCCAAACTGGTTGATTTTGGCTTTGCAAAGAAAATAGGATTTGGAAAGAAAACATGG  1593
            |||||||.|||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475  TAGATCATCGAGGCTATGCCAAACTGGTTGACTTTGGCTTTGCAAAGAAAATAGGATTTGGAAAGAAAACATGG  1548

Query 1594  ACTTTTTGTGGGACTCCAGAGTATGTAGCCCCAGAGATCATCCTGAACAAAGGCCATGACATTTCAGCCGACTA  1667
            ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1549  ACTTTTTGTGGGACTCCAGAATATGTAGCCCCAGAGATCATCCTGAACAAAGGCCATGACATTTCAGCTGACTA  1622

Query 1668  CTGGTCACTGGGAATCCTAATGTATGAACTCCTGACTGGCAGCCCACCTTTCTCAGGCCCAGATCCTATGAAAA  1741
            |||||||||.|||||.||.||||||||.||.|||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1623  CTGGTCACTAGGAATTCTGATGTATGAGCTTCTGACTGGCAGCCCACCTTTCTCAGGCCCAGATCCAATGAAAA  1696

Query 1742  CCTATAACATCATATTGAGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCCAAAAATGCTGCTAATTTA  1815
            ||||.||.||||||.||.|||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1697  CCTACAATATCATACTGCGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCAAAAAATGCTGCTAATTTA  1770

Query 1816  ATTAAAAAACTATGCAGGGACAATCCATCAGAAAGATTAGGGAATTTGAAAAATGGAGTAAAAGACATTCAAAA  1889
            |||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.|||||.|||||||||||.||
Sbjct 1771  ATTAAAAAACTATGCAGGGACAACCCATCAGAGAGGTTAGGAAATTTGAAAAACGGAGTCAAAGACATTCAGAA  1844

Query 1890  GCACAAATGGTTTGAGGGCTTTAACTGGGAAGGCTTAAGAAAAGGTACCTTGACACCTCCTATAATACCAAGTG  1963
            .|||||.|||||||||||||||||.||||||||||||||||||||.||||||||||||||.|||||.|||||||
Sbjct 1845  ACACAAGTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGTG  1918

Query 1964  TTGCATCACCCACAGACACAAGTAATTTTGACAGTTTCCCTGAGGACAACGATGAACCACCACCTGATGACAAC  2037
            ||||.|||||||||||||||||.|||||||||||||||||||||||||.||||||.||||||||||||||||||
Sbjct 1919  TTGCGTCACCCACAGACACAAGCAATTTTGACAGTTTCCCTGAGGACAGCGATGAGCCACCACCTGATGACAAC  1992

Query 2038  TCAGGATGGGATATAGACTTC  2058
            |||||.|||||.|||||||||
Sbjct 1993  TCAGGCTGGGACATAGACTTC  2013

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.