Nucleotide Global Alignment

Description

Query:
ccsbBroad304_01287
Subject:
NR_136584.2
Aligned Length:
5815
Identities:
1253
Gaps:
4544

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTACTCAGCCGAGCGGCCGAGGCCGGACGACGCGGCTTGGATTGCGGAGCCGCGAGCAGCGCTGGGTAACGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCGGCGACCACCCCGGACGGCCCCTGTCCCCGCTGGCGGGCTTCCCTGTCGCCGTTCGCTGCGCTGCCGGCTT  148

Query    1  ----------------------------------------------ATGAGCAGAAGCAAGCGTGACAACAATT  28
                                                          ||||||||||||||||||||||||||||
Sbjct  149  CTTGGTGAATTTTTGGATGAAGCCATTAAATTAATTGCTTGCCATCATGAGCAGAAGCAAGCGTGACAACAATT  222

Query   29  TTTATAGTGTAGAGATTGGAGATTCTACATTCACAGTCCTGAAACGATATCAGAATTTAAAACCTATAGGCTCA  102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTTATAGTGTAGAGATTGGAGATTCTACATTCACAGTCCTGAAACGATATCAGAATTTAAAACCTATAGGCTCA  296

Query  103  GGAGCTCAAGGAATAGTATGCGCAGCTTATGATGCCATTCTTGAAAGAAATGTTGCAATCAAGAAGCTAAGCCG  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGAGCTCAAGGAATAGTATGCGCAGCTTATGATGCCATTCTTGAAAGAAATGTTGCAATCAAGAAGCTAAGCCG  370

Query  177  ACCATTTCAGAATCAGACTCATGCCAAGCGGGCCTACAGAGAGCTAGTTCTTATGAAATGTGTTAATCACAAAA  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACCATTTCAGAATCAGACTCATGCCAAGCGGGCCTACAGAGAGCTAGTTCTTATGAAATGTGTTAATCACAAAA  444

Query  251  ATATAATTGGCCTTTTGAATGTTTTCACACCACAGAAATCCCTAGAAGAATTTCAAGATGTTTACATAGTCATG  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATATAATTGGCCTTTTGAATGTTTTCACACCACAGAAATCCCTAGAAGAATTTCAAGATGTTTACATAGTCATG  518

Query  325  GAGCTCATGGATGCAAATCTTTGCCAAGTGATTCAGATGGAGCTAGATCATGAAAGAATGTCCTACCTTCTCTA  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAGCTCATGGATGCAAATCTTTGCCAAGTGATTCAGATGGAGCTAGATCATGAAAGAATGTCCTACCTTCTCTA  592

Query  399  TCAGATGCTGTGTGGAATCAAGCACCTTCATTCTGCTGGAATTATTCATCGGGACTTAAAGCCCAGTAATATAG  472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCAGATGCTGTGTGGAATCAAGCACCTTCATTCTGCTGGAATTATTCATCGGGACTTAAAGCCCAGTAATATAG  666

Query  473  TAGTAAAATCTGATTGCACTTTGAAGATTCTTGACTTCGGTCTGGCCAGGACTGCAGGAACGAGTTTTATGATG  546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TAGTAAAATCTGATTGCACTTTGAAGATTCTTGACTTCGGTCTGGCCAGGACTGCAGGAACGAGTTTTATGATG  740

Query  547  ACGCCTTATGTAGTGACTCGCTACTACAGAGCACCCGAGGTCATCCTTGGCATGGGCTACAAGGAAAACGTTGA  620
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct  741  ACGCCTTATGTAGTGACTCGCTACTACAGAGCACCCGAGGTCATCCTTGGCATGGGCTACAAGGAAAACGTGGA  814

Query  621  CATTTGGTCAGTTGGGTGCATCATGGGAGAAATGAT------CAAAGGTGGTGTTTTGTTCCCAGGTACAGATC  688
            ..|.|||||.||.||||||||.||||||||||||.|      ||||      .|..|.||.|||||.|..||..
Sbjct  815  TTTATGGTCTGTGGGGTGCATTATGGGAGAAATGGTTTGCCACAAA------ATCCTCTTTCCAGGAAGGGACT  882

Query  689  ATATTGATCAGTGGAATAAAGTTATTGAACAGCTTGGAACACCATGTCCTGAATTCATGAAGAAACTGCAACCA  762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  ATATTGATCAGTGGAATAAAGTTATTGAACAGCTTGGAACACCATGTCCTGAATTCATGAAGAAACTGCAACCA  956

Query  763  ACAGTAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTGATGTCCT  836
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  ACAGTAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTGATGTCCT  1030

Query  837  TTTCCCAGCTGACTCAGAACACAACAAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAA  910
            |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct 1031  TTTCCCAGCTGACTCAGAACACAACAAACTTAA----AGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAA  1100

Query  911  TAGATGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCT  984
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101  TAGATGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCT  1174

Query  985  GAAGCAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAA  1058
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175  GAAGCAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAA  1248

Query 1059  AGAATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAGCCCTCTC  1132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249  AGAATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAGCCCTCTC  1322

Query 1133  CTTTAGGTGCAGCAGTGATCAATGGCTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTCTTCAATG  1206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323  CTTTAGGTGCAGCAGTGATCAATGGCTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTCTTCAATG  1396

Query 1207  TCAACAGATCCGACTTTGGCCTCTGATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCTGCTGTAG  1280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397  TCAACAGATCCGACTTTGGCCTCTGATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCTGCTGTAG  1470

Query 1281  A-------------------------------------------------------------------------  1281
            |                                                                         
Sbjct 1471  ATGACTACTTGGGCCATCGGGGGGTGGGAGGGATGGGGAGTCGGTTAGTCATTGATAGAACTACTTTGAAAACA  1544

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1545  ATTCAGTGGTCTTATTTTTGGGTGATTTTTCAAAAAATGTAGAATTCATTTTGTAGTAAAGTAGTTTATTTTTT  1618

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1619  TTAATTTCAAGTGATGTAATTTAAAACCTAAGTTGTGTTTCAAAACAGCAACAAAACTGTATTGTATTTTTTTT  1692

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1693  GCTGTAATTAACTGTATAATGTAAACCTAATTATTTTATCATGGTTTAAATTTTTTGCATATTTGCTTTATCTT  1766

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1767  ATGCTGCTGATTTTTTTAACTGAATTTGTAAGATTTTGTTTATCAAAGCAACTATTATGTGGTGACTTGCCTAT  1840

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1841  ATCATGAATTATTTAAGATTTTTATAGTTTTTTTTAATTAGAATTTATTTCAGATGTTTTGTTCATGATACTAT  1914

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1915  CCTTCAGGGTTATGTGCTTATCAATGAAATAACCCCAGAGGAGTGAGGGAAAATAACTTGTAGCCAGTTATATT  1988

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1989  CAGGAATAACTACTGTAAATGATGAACGTGTTAGGAGACCTCCAATATTTGCTACTTGCCAATCCTAATTTAGT  2062

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2063  TACAAGAATTGGTAGGCAATCCTACTTAATTTTGGCAAAAGCCCCGTCATCTAAATGGCAGAATAACTCAGAGC  2136

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2137  ATGTCTTTGAAGATGCTGGGCGTCTACCACCACCTTATGTCCCCACCCTACCCAACAAAAATAAGTAAAAAGAA  2210

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2211  TATGGTGTATTCTACAAATTTGTGGCATGCTCAAAGTTTATGATCACATAAAGGCAAGAGGATACTTCATGAAT  2284

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2285  AATACATTTCAATGCAAATAAACAGATGGTTCACTTCTACTAGCTATGAGCCTGTTTTTGTATACACTGAGTTA  2358

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2359  ATCTACTCAGGCTGTAGGTCCCAGCAATGTTCTAGAGTCTGGTCTTTCCCTTTCCTGCAGCTTCGGGTCCTTGG  2432

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2433  ACCTTTCCTGTTTCCTATTACTTGGAGTGTCTGTCAGTTGAGCACCAGTTGTTCTGGTGTTTCATTTGATTCTA  2506

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2507  CTTGTAGCATAATCATTTATACGAGCTATTGGGAGGTTCCAAACCCTACCTAGATTTGTGTAGGTGATGTATCA  2580

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2581  AATGAGCAATATACCGTTCATCTGAAAATAGTAGCACACAGCCATATATAGGATATCATTTTCTAAGGACTGTT  2654

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2655  TCTTCACATTGAGCAGAGCAGGCATAAATGGTGGTTATTTAGTCTAAGTCTTTTATTTTTTTATACCTGATTTT  2728

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2729  CAACATAACACGCAATGTGGATGTCGAGTAGTGTTAAGAATGGTGCTGCTCCTGACAAGTGTATGTTAACTGTT  2802

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2803  TACATTTTCTATCTGTAGAATTATTTCTCTATTACTGAACTTTTCCTAAGTAAAATGTCTTTGAAGTCTCGTTA  2876

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2877  TTTCTGAAATACGTTGTCTGTAATAGACCCAGGCACCTTTTAAATTATCTCTGGAACAAGAGGGATTTCATGTA  2950

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2951  ATGAACTAGGAAATGCATACTCACATAAGCAACAAGGTTCTAGGCAGAAAGCCCCTTGGAATTTGTGACCAACA  3024

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3025  GGAGCAAGAACAGGTGCGGCTCAACATGCAATGTCTGAAAATTTGCTTGGCATTTTATTCATATATTTAGTGCA  3098

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3099  AAATTATTTTTGAGTGAGATATTTTACATCACTGTTAATGTGCAATATTTAAGATTAAAATACATTAGCTTTTT  3172

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3173  TATATACTTTGAAGTAGCAAGTTTGTTTTCGATGGCTTAGAGTCATGATTTCCAGCTTCCCAGCCTTTTTATCA  3246

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3247  GTCCCTTTTCTAATACAACAAGGTGCATTAATTTGATTAGGCAAATTAGAGTTCTAAGACACTTCTTGAATTGT  3320

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3321  AGACAGAAAATATTGGATTCACAATTTCAGCAGAAATTTGAGAATGAGTGTGTTTATATTAATTTCACAATTAG  3394

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3395  CTGTATTTTCTGTAGCATAGATTATGTCACTGTTGCACTTTCACAGCAGACATGCTTTCAGAAGGTTCTCATAT  3468

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3469  TTTATGTTTGATTGCTGATAAGCCATCTCTATTGATACAGATTTTGGTTAAGTAAGGAAAACCAGGTGTGTGTC  3542

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3543  TGTATCATTTATTGTAAATGCCAGCTGCCACTTGCCAACCATCATGTTCAGTTCAATTCAAAGAAAACAAACTC  3616

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3617  TCATTACTTAGTGTAAACTAAAATACTTAACAAATTATATCCTAAAAACAAGGTCTCTTTGTTAAATGTTGCAT  3690

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3691  GCCCTAGGTTTTAAATTACTACATCCAAATACAGTTTTCGTCTTAAATTTGTTAAGCTAAATATATGTTGGTTC  3764

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3765  TTTTTATTTTGGAATCCTTTAAGCATCTTAAACATTTTTTTTTTGAAGAGAAGTTACAAATAACATTTCTATCA  3838

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3839  GGTAGTACTTGTATGAAACCACCTTTCTTATTCTATAATTTTGATTTTTCAATTTTATATACTTAATATACTCA  3912

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3913  CTGTCTTACTATCAGAAAGTTATTTTGACCAAGATTTTTATTATCTTCATAGATTCAGAAAGAGATGCTAATTC  3986

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3987  TGTACCAATGTCTTCCTGGTTACTATTCTCTTCCCTCTAATATATACTGGCCATTTGTAAAACCATTGTGTTGT  4060

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4061  TGGGATCACTTAGTTATACTATACGCAGATAGAGCATCTCAACTCTGTCATAGTGTTTGCTGAACAGTTTTCAG  4134

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4135  TGTCATGCACCTTTGGCTGCTAATTGTTCCTGACGTGCACTCTTCCGAGTTGGTAAAGGCACAGTGTGTTCATG  4208

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4209  CCAGACTTCTAAGAGAAACACCAGCCTCTTAAATCAGAAGCCTACACACAACCCCCTTAACAATCCAAAGAAGC  4282

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4283  TTGATGGTGTGCAAAGAAGCATCCTGCCAGCCTTGTCATTGTTCTGTTCTATGCTAATCCTGCTGTGTTGTCTA  4356

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4357  AAAGATGGAGGGAAGAGGACATCAGTGTCTGATAGTGAAATCATCAGCAGGAAAGTGAAGCTCTTTCCTTGGTT  4430

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4431  ACAGATAAGACTTGGTTTACACTATTGGCCAGTATCTGCTAAACATATGAAGACTTAACTATTCAGTGTTGCCT  4504

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4505  AGGCATTCGCCTGCACAACATTTTGAGGTTAGAACATAGAATATTTTCAGAAATACTGTTGTAGTTTGTGAGTG  4578

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4579  TTGTTCATTAGTTACACATTAGCTATAGAGTGGATGCATGAAGCCCCATGACACCAGTAAACTTCTCTTACCAG  4652

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4653  TAGGTAAACCAAACACCATTCTGTCATTAGCAGCCCTCTTAAATGTTGCCTCTCCGTATCCTGTTGCATTTTTG  4726

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4727  TGTGCATTGTGTTTCTACTGATCTCTCTTAGGTTTTTACGGAATCAAAGGAAACTAATTTTTCCTTAATAGCAA  4800

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4801  GAAAGATGAAGAGGTAAAGGGCATTGAAGCAGAAATGTATAGTTTGGGGTACGATTAGAAAACTCGTAAGGAAA  4874

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4875  ACAGAAGTCCTAATTTCAAACTGACTGCTCTTCGTTAAGTGCTCTTAAGGAGAGTCTAGTAACAGTAACACTTT  4948

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 4949  CTGGCCATTTCTAGTTTAGATTCTCTTCGTTACTGAAACTTTTGAGAAATATTACCTGTGGATTAATTTTGCAC  5022

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 5023  AATGTTCTATTCTCATAATGACTTACAAATTAAACTAGGTTTTTATTGAACTACCTCACACTAATTTTCTATGC  5096

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 5097  TTTCCCAAGTAAGCTGTTGCCCTGTTAGATCTTTACTGAGTGAATTATAAATGTGTGTTAAATACTTTCTAGCC  5170

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 5171  AATGTTGACACAATACCAGTAAGTATGTAAAGTATATACCTTACATCAGTAAGAGACACGTGTAAAATCTTTGA  5244

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 5245  CTGTATGTCTTGCAAAATTGTGCTCGTTGACATTATTACTGTTTTTGTAAGTAGAAACCTGCTCGTGATATCGG  5318

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 5319  TCCATTTACATTTTACAAAAGGAGTAAATCTTAGTAAAAATTTTACGAAGAAATAAATTACTTTTGTAGGCCCA  5392

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 5393  ATATTTGGTATATTTTTGAGAAGCTGTTAATCTTTTAGCTGAATAATGAAGTTAGACTGAATTACGTGTCTCCC  5466

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 5467  TGGACTGTGACATCTATTTTCTCATTACAGTTTATCCTGGTCAGCAGGGTGTCACACCTGGAAACCTGAGTATG  5540

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 5541  ATAGCTGACATTTGCTTTTCTCCCTCTGCGATGTCATTCCTCCTCCATTCCTCTCCTTCCCTGTGTTCCGTTCC  5614

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 5615  CTCTCCTTTCCTCTAGACAAAACAAAATGGGGCACTTTTTAGGGAATGCTGAGATCATTATTGTGGTTTTTCAT  5688

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 5689  CATTCATGCCCTAGTCATTAAACATGCACCACTGGAATGTAAACAATGTTATCTAGTATGTCAATTGGTTATAA  5762

Query 1282  -------------------------------------------  1281
                                                       
Sbjct 5763  TATTTTAAATAAAAAAGAAAAAAGTGGTATGAAAATTATGAAA  5805

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