Nucleotide Global Alignment

Description

Query:
ccsbBroad304_01440
Subject:
XR_002958314.1
Aligned Length:
4424
Identities:
141
Gaps:
4271

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGTGAAGGTCACGTCGCCATGATATCTCTTCCAAATGCTTGATGAAAAAGGTGGAAGGGTCACTTGACCCAGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGTTGAAGGCTGCAGTGAGCCCTGTTTTTGCCACCACACTCCAGCCTGGGATTGATTTCTAAAGACTCATGTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGTCAGGCATGGCTCTTCCTCAGGGACGCTTGACTTTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATTCCTGAACCCTGCACAGAGGGCTTTGTACAGGGAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGATGTTGGAGAACTACAGGAACCTGGAGGCTGTGGATATCTCTTCCAAACACATGATGAAGGAGGTCTTGTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AACAGGGCAAGGCAATAGAGAAGTGATCCACACAGGGACATTGCAAAGACATCAAAGTTATCACATTGGAGACT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTTGCTTCCAGGAAATTGAGAAAGAAATTCATAACATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATGGCCAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAGCACCCACGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAACATGATCACAGGCATGCTGGAAACAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATATTTCAGATCAAAGGTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAATTGCTAATCAACTTGAGAAGTCTACCAGTGATGCTTCCTCAGTTTCAACATCCCAAAGAATTTCCTGTAGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCCCAAATCCATATTTCTAATAACTATGGGAATAATCCCCTGAATTCTTCATTACTCCCACAAAAACAGGAAGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACACATGAGAGAAAAATCTTTCCCATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAAGGAAAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTGGCAAGCTCTTTAATCACAAGCAATAC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTTGCATGCCATCGTAGATGTCACACTGGAGAGAAACCTTACAAGTGTAAAGAGTGTGGAAAGTCCTTCAGTTA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAAGTCATCCCTTACATGCCATCATAGACTTCATACTGGAGTAAAACCTTACAAGTGTAATGAGTGTGGCAAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCTTTCGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGCCATCAAAGACTTCATACTGGAGTGAAACCTTACAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATGTAAGATTTGTGAGAAGGCTTTTGCGTGTCATTCCTATCTGGCAAACCATACTAGAATTCATAGTGGAGAGA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AAACATACAAGTGTAATGAGTGTGGTAAGGCTTTTAATCATCAATCAAGCCTTGCACGTCATCATATACTTCAT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCAGAAATCAACCCTTGAGAGACATAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATACAGCTTTCACGTGTAATTCACAGCTGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CACGACATAGAAGAATTCACACTGGAGAGAAAACTTACAAGTGTAATGAGTGTCGCAAGACCTTCAGCCGCAGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCATCCCTTCTATGCCATCGTAGACTTCATAGTGGTGAAAAACCTTACAAGTGTAATCAGTGTGGCAATACCTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCGTCACCGGGCATCCCTTGTATACCATCGTAGACTTCACACTCTAGAGAAATCTTACAAATGTACGGTTTGTA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ACAAGGTTTTCATGCGTAATTCAGTCCTGGCTGTACATACTAGAATTCACACTGCAAAGAAACCTTACAAGTGT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AATGAATGTGGGAAAGCTTTTAATCAACAATCACATCTTTCACGTCATCGTAGACTTCATACTGGAGAGAAACC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTACAAATGTGAAGCATGTGACAAAGTTTTTGGTCAGAAATCAGCTCTTGAGTCACATAAGAGAATTCATACTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GAGAGAAACCATACAGATGTCAGGTTTGTGACACAGCTTTCACGTGGAATTCACAGCTGGCACGACATACAAGA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATTCACACTGGAGAAAAAACTTACAAGTGTAATGAGTGTGGGAAGACCTTCAGTTACAAGTCATCACTTGTATG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCATCGTAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTTGTGACAAGGCTTTCGTGTGTCGTTCCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATGTGGCAAAACATACTAGAATTCACAGTGGAATGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCAGT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AACAGGTCATCCCTTGTATGCCATCGTAGAATTCATAGTGGTGAGAAACCTTACAAGTGTAGTGAGTGCAGCAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GACGTTCAGTCAGAAGGCAACCCTTCTATGCCATCGTAGACTTCATAGTGGTGAGAAACCTTACAAGTGTAACG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ACTGTGGCAATACCTTCCGTCACTGGTCATCCCTTGTATACCATCGTAGACTTCATACTGGAGAGAAATCTTAC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACCTGGCAAGACATATTAGAATTCACACTGCAGA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GAAACCTTACAAGTGTAATGAATGTGGAAAGGCTTTTAATGAACAATCACACCTTTCACGTCATCATAGAATTC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTCAGTCGCAAATCACACCTTAAAAGACAT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AGGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGACCGGTCAACACT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TATTCACCATCAGGCAATTCATGGTATAGGGAAATTTGATTAATATAATGATTGTCACAAAGTCTTCAGTAACA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CTACAACAATTGCAAATCATTGGAGAATCCATGATGAAGAGAAATCTTCTGAGTGTAATAAATGTGGCATGTTT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TTCAGACATTGTTCATACATTGCAGTTCATTGGCAACCTCATACTGGAGAGAAACCTTACAAATGTCATGATTG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACAGGAGAATTCATACAGGAGAGAAACCTCACAAGTGT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GATGATTGTGGCAAAGCCTTTACTTCACATTCACACCTCGTTGGACATCAGAGAATCCATACTGGACAGAAATC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTCACTCCTTGCAGAACATGAGAAAATTCATTTTT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  GAGATAACTGTTCCCAATGCAGCTTTTCAGTAAGTGGTATGCCTGGGAAACATGGTGAGACCCCCGTTTCTGCA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  AAAAATACAAAAATTAGCTGGGAATGATGGCACATGCCTGCAGTATCAACTACTGTGGAGTCTGCAGTGGGAGG  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  ATGGCTTGAGCCTGGGAGGTCAAGACTATAGTGAGCTGTAATCATGCTACTGCACTCCAGCATGGTTGACAGAG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CAAGATGCTGTCTAAAAAAGAATACTTATTGTAAAGTTTGGGTACAGGAATAATGAAGTCATTGATAGTTTATG  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  AACAGGCTATGGAGTTGATGCCCAAAAGAAATAAACAGTTTGTAAATGAATAACTTATTTTGAGTTGTGACAAG  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  ACAATGTTGAAAGTGATGCATGAAGCGGCAGGCAGACCATCCACATCAGTTTTACAGAAAAAAAGTTAATCTTG  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TTCGTGCTGCAGTGAAGAGAACAGCAAACAGGAGAAACAATAGTCAGGAATTCAATAATAGCCTGGTTAACATG  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  ATGAAACCCCGTCTCTACTAAAAATACAAAGATTAGCTGGGCACAGTGGTGGGCACCTGTAATCCCAGCTACTC  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  AAGAGGCTGAGGCAGAAGAATTGCTTGAACCCGGGAGGCGGAAGTTTCGATGAGCCGGGATCCTGCCGTTGCAC  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  TCCAGCCTGGGCAACAAGAGCAAACCTCTGTCTAAAACAAACAAACAAAAAGGTCTAGCCCCCTCTCCTCCTTT  3996

Query    1  ---------------------------------------ATGTCTTCTCACAAGACTTTCAGGATTAAGCGATT  35
                                                   ||||||||||||||||||||||||||||||||.||
Sbjct 3997  GTCTGCCATCATGGTGTGTGCTTGACTCCACTTCTTGTCATGTCTTCTCACAAGACTTTCAGGATTAAGCGGTT  4070

Query   36  CCTGGCCAAGAAACAAAAGCAAAATCGTCCCATTCCCCAGTGGATTCGGATGAAAACTGGAAATAAAATCAGGT  109
            .||||||||.||.||||||.||||||||||.|||.|||||||||||||.|||||||||||.|||||||||||||
Sbjct 4071  TCTGGCCAACAACCAAAAGTAAAATCGTCCGATTTCCCAGTGGATTCGAATGAAAACTGGCAATAAAATCAGGT  4144

Query  110  ACAACTCCAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTA------------------------------  153
            .|||||..||||||||||||||||||||||||||||||||||||                              
Sbjct 4145  CCAACTTTAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTATAAGGAATTGCACGTGAGATGGCACACATA  4218

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4219  TTTATGCTGTGTGAGCATCATAATCACGTTACTTAAGCTGAAAATGTCACTACCATCTGGAGACTTGGACATGT  4292

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4293  TTTATTGGGAATATATTTTTTTCTCTCTGAATCTGTTATGAACGCATTGGTTGGGTGGGTTCAGTAATAAACAT  4366

Query  154  ----------------------------------------------------------  153
                                                                      
Sbjct 4367  GTGAGACCTTTCATTTCAAAAAAAAAATTTTAATGACATAATAGATTACCTAAATTTC  4424

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