Nucleotide Global Alignment

Description

Query:
ccsbBroad304_01600
Subject:
XM_011239405.1
Aligned Length:
2132
Identities:
1190
Gaps:
808

Alignment

Query    1  ATGGCAGAGACACTGGAGTTCAACGACGTCTATCAGGAGGTGAAAGGTTCCATGAATGATGGTCGACTGAGGTT  74
            ||||||||||||.||||||||||||||.|||..||||||||||||||.||||||||||||||..|.||..|.||
Sbjct    1  ATGGCAGAGACATTGGAGTTCAACGACATCTTCCAGGAGGTGAAAGGGTCCATGAATGATGGGAGGCTTCGATT  74

Query   75  GAGCCGTCAGGGCATCATCTTCAAGAATAGCAAGACAGGCAAAGTGGACAACATCCAGGCTGGGGAGTTAACAG  148
            ||||||||||||.||||||||.|||||.||||||||.||||||||||||||||||||||||||||||||.||||
Sbjct   75  GAGCCGTCAGGGTATCATCTTTAAGAACAGCAAGACGGGCAAAGTGGACAACATCCAGGCTGGGGAGTTGACAG  148

Query  149  AAGGTATCTGGCGCCGTGTTGCTCTGGGCCATGGACTTAAACTGCTTACAAAGAATGGCCATGTCTACAAGTAT  222
            ||||.||||||||.||.||.||..|.||||||||.|||||||||||.|||||||||||.||||||||||||||.
Sbjct  149  AAGGCATCTGGCGTCGGGTAGCATTAGGCCATGGGCTTAAACTGCTCACAAAGAATGGGCATGTCTACAAGTAC  222

Query  223  GATGGCTTCCGAGAATCGGAGTTTGAGAAACTCTCTGATTTCTTCAAAACTCACTATCGCCTTGAGCTAATGGA  296
            |||||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  223  GATGGCTTCCGCGAATCGGAGTTTGAGAAACTCTCTGACTTCTTCAAAACTCACTATCGCCTTGAGCTAATGGA  296

Query  297  GAAGGACCTTTGTGTGAAGGGCTGGAACTGGGGGACAGTGAAATTTGGTGGGCAGCTGCTTTCCTTTGACATTG  370
            ||||||.||.||||||||||||||||||||||||||||||||.|||||.||.|||||||||||.||||||||||
Sbjct  297  GAAGGATCTGTGTGTGAAGGGCTGGAACTGGGGGACAGTGAAGTTTGGAGGACAGCTGCTTTCTTTTGACATTG  370

Query  371  GTGACCAGCCAGTCTTTGAGATACCCCTCAGCAATGTGTCCCAGTGCACCACAGGCAAGAATGAGGTGACACTG  444
            ||||.||.||||||||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||.|||
Sbjct  371  GTGATCAACCAGTCTTTGAGATACCCCTAAGCAATGTGTCCCAGTGTACCACAGGCAAGAATGAGGTGACCCTG  444

Query  445  GAATTCCACCAAAACGATGACGCAGAGGTGTCTCTCATGGAGGTGCGCTTCTACGTCCCACCCACCCAGGAGGA  518
            |||||||||||.||.||.||.||.||.||.|||||||||||||||||||||||.||.||.|||||.|||||.||
Sbjct  445  GAATTCCACCAGAATGACGATGCTGAAGTATCTCTCATGGAGGTGCGCTTCTATGTTCCTCCCACGCAGGAAGA  518

Query  519  TGGTGTGGACCCTGTTGAGGCCTTTGCCCAGAATGTGTTGTCAAAGGCGGATGTAATCCAGGCCACGGGAGATG  592
            |||||||||||||||.||||||||||||||||||||..||||||||||.|||||.|||||||||||.|||||.|
Sbjct  519  TGGTGTGGACCCTGTGGAGGCCTTTGCCCAGAATGTTCTGTCAAAGGCAGATGTGATCCAGGCCACCGGAGACG  592

Query  593  CCATCTGCATCTTCCGGGAGCTGCAGTGTCTGACTCCTCGTGGTCGTTATGACATTCGGATCTACCCCACCTTT  666
            |||||||||||||||||||||||||||||.||||||||||.|||||.||.||.||.|||||||||||.||||||
Sbjct  593  CCATCTGCATCTTCCGGGAGCTGCAGTGTTTGACTCCTCGCGGTCGATACGATATCCGGATCTACCCTACCTTT  666

Query  667  CTGCACCTGCATGGCAAGACCTTTGACTACAAGATCCCCTACACCACAGTACTGCGTCTGTTTTTGTTACCCCA  740
            ||.||||||||||||||||||||||||||||||||||||||.||.|||||.||.|||||.||..||.||||.||
Sbjct  667  CTACACCTGCATGGCAAGACCTTTGACTACAAGATCCCCTATACTACAGTTCTCCGTCTCTTCCTGCTACCACA  740

Query  741  CAAGGACCAGCGCCAGATGTTCTTTGTGATCAGCCTGGATCCCCCAATCAAGCAAGGCCAAACTCGCTACCACT  814
            ||||||.|||.|.|||||||||||||||||||||.|||||||.||.||||||||.|||||||||||.|||||||
Sbjct  741  CAAGGATCAGAGACAGATGTTCTTTGTGATCAGCTTGGATCCTCCCATCAAGCAGGGCCAAACTCGTTACCACT  814

Query  815  TCCTGATCCTCCTCTTCTCCAAGGACGAGGACATTTCGTTGACTCTGAACATGAACGAGGAAGAAGTGGAGAAG  888
            |||||||||||||||||||||||||.||||||||.||.||||||||.||||||||.|||||||||||.||.|||
Sbjct  815  TCCTGATCCTCCTCTTCTCCAAGGATGAGGACATCTCCTTGACTCTCAACATGAATGAGGAAGAAGTAGAAAAG  888

Query  889  CGCTTTGAGGGTCGGCTCACCAAGAACATGTCAGGATCCCTCTATGAGATGGTCAGCCGGGTCATGAAAGCACT  962
            |||||||||||.||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||
Sbjct  889  CGCTTTGAGGGGCGACTCACCAAGAACATGTCAGGATCCCTCTATGAAATGGTCAGTCGGGTCATGAAAGCACT  962

Query  963  GGTAAACCGCAAGATCACAGTGCCAGGCAACTTCCAAGGGCACTCAGGGGCCCAGTGCATTACCTGTTCCTACA  1036
            .||.|||||.||.||||||||.|||||||||||||||||||||||||||||||||||.||||||||.|||||.|
Sbjct  963  TGTCAACCGTAAAATCACAGTCCCAGGCAACTTCCAAGGGCACTCAGGGGCCCAGTGTATTACCTGCTCCTATA  1036

Query 1037  AGGCAAGCTCAGGACTGCTCTACCCGCTGGAGCGGGGCTTCATCTACGTCCACAAGCCACCTGTGCACATCCGC  1110
            ||||.|||||||||||.||.|||||.|||||||||||||||||||||||.||.|||||.|||||||||||||||
Sbjct 1037  AGGCCAGCTCAGGACTCCTGTACCCACTGGAGCGGGGCTTCATCTACGTGCATAAGCCCCCTGTGCACATCCGC  1110

Query 1111  TTCGATGAGATCTCCTTTGTCAACTTTGCTCGTGGTACCACTACTACTCGTTCCTTTGACTTTGAAATTGAGAC  1184
            ||.|||||||||||.||||||||||||||.|||||.|||||.||.|||||||||||.||||||||.||||||||
Sbjct 1111  TTTGATGAGATCTCTTTTGTCAACTTTGCCCGTGGCACCACGACCACTCGTTCCTTCGACTTTGAGATTGAGAC  1184

Query 1185  CAAGCAGGGCACTCAGTATACCTTCAGCAGCATTGAGAGGGAGGAGTACGGGAAACTGTTTGATTTTGTCAACG  1258
            ||||||.|||||||||||||||||||||||||||||.|||||||||||.||.||.||.||.|||||||||||.|
Sbjct 1185  CAAGCAAGGCACTCAGTATACCTTCAGCAGCATTGAAAGGGAGGAGTATGGAAAGCTTTTCGATTTTGTCAATG  1258

Query 1259  CGAAAAAGCTCAACATCAAAAACCGAGGATTGAAAGAGGGCATGAACCCAAGCTACGATGAATATGC---TGAC  1329
            |||||||||||||||||||.|||.|||||.|||||||      |||   ||   |.||.|    |||   ||.|
Sbjct 1259  CGAAAAAGCTCAACATCAAGAACAGAGGACTGAAAGA------GAA---AA---AAGAGG----TGCGTGTGGC  1316

Query 1330  TC--TGATGAGGACCAGCATGATGCCTACTTGGAGAGGATGAAGGAGGAAGGCAAGATCCGGGAGGAGAATGCC  1401
            ||  |        ||         |||.|.                                            
Sbjct 1317  TCCTT--------CC---------CCTTCC--------------------------------------------  1329

Query 1402  AATGACAGCAGCGATGACTCAGGAGAAGAAACCGATGAGTCATTCAACCCAGGTGAAGAGGAGGAAGATGTGGC  1475
                                                                                      
Sbjct 1330  --------------------------------------------------------------------------  1329

Query 1476  AGAGGAGTTTGACAGCAACGCCTCTGCCAGCTCCTCCAGTAATGAGGGTGACAGTGACCGGGATGAGAAGAAGC  1549
                                                                                      
Sbjct 1330  --------------------------------------------------------------------------  1329

Query 1550  GGAAACAGCTCAAAAAGGCCAAGATGGCCAAGGACCGCAAGAGCCGCAAGAAGCCTGTGGAGGTGAAGAAGGGC  1623
                                                                                      
Sbjct 1330  --------------------------------------------------------------------------  1329

Query 1624  AAAGACCCCAATGCCCCCAAGAGGCCCATGTCTGCATACATGCTGTGGCTCAATGCCAGCCGAGAGAAGATCAA  1697
                                                                                      
Sbjct 1330  --------------------------------------------------------------------------  1329

Query 1698  GTCAGACCATCCTGGCATCAGCATCACGGATCTTTCCAAGAAGGCAGGCGAGATCTGGAAGGGAATGTCCAAAG  1771
                                                                                      
Sbjct 1330  --------------------------------------------------------------------------  1329

Query 1772  AGAAGAAAGAGGAGTGGGATCGCAAGGCTGAGGATGCCAGGAGGGACTATGAAAAAGCCATGAAAGAATATGAA  1845
                                                                                      
Sbjct 1330  --------------------------------------------------------------------------  1329

Query 1846  GGGGGCCGAGGCGAGTCTTCTAAGAGGGACAAGTCAAAGAAGAAGAAGAAAGTAAAGGTAAAGATGGAAAAGAA  1919
                                                                                      
Sbjct 1330  --------------------------------------------------------------------------  1329

Query 1920  ATCCACGCCCTCTAGGGGCTCATCATCCAAGTCGTCCTCAAGGCAGCTAAGCGAGAGCTTCAAGAGCAAAGAGT  1993
                                                                                      
Sbjct 1330  --------------------------------------------------------------------------  1329

Query 1994  TTGTGTCTAGTGATGAGAGCTCTTCGGGAGAGAACAAGAGCAAAAAGAAGAGGAGGAGGAGCGAGGACTCTGAA  2067
                                                                                      
Sbjct 1330  --------------------------------------------------------------------------  1329

Query 2068  GAAGAAGAACTAGCCAGTACTCCCCCCAGCTCAGAGGACTCAGCGTCAGGATCCGATGAG  2127
                                                                        
Sbjct 1330  ------------------------------------------------------------  1329

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.