Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02000
Subject:
NR_073435.2
Aligned Length:
2512
Identities:
1228
Gaps:
1284

Alignment

Query    1  ------------------------------ATGGAGCAGGCACCTCCGGACCCCGAGCGGCAGCTCCAGCCGGC  44
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  GCACTGGGTTCGCCGCGCCGAACTGCAGCCATGGAGCAGGCACCTCCGGACCCCGAGCGGCAGCTCCAGCCGGC  74

Query   45  GCCCTTGGAGCCGCTGGGCTCCCCAGACGCTGGGCTGGGGGCTGCGGTCGGCAAGGAAGCGGAGGGGGCCGGAG  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GCCCTTGGAGCCGCTGGGCTCCCCAGACGCTGGGCTGGGGGCTGCGGTCGGCAAGGAAGCGGAGGGGGCCGGAG  148

Query  119  AAGAGAGCTCTGGGGTCGACACGATGACACACAATAATTTTTGGTTGAAGAAGATAGAAATCAGTGTTTCAGAA  192
            ||||||||||||||||||||||                                                    
Sbjct  149  AAGAGAGCTCTGGGGTCGACAC----------------------------------------------------  170

Query  193  GCAGAAAAACGAACTGGAAGAAATGCCATGAACATGCAAGAAACATATACTGCTTACCTCATTGAAACAAGGTC  266
                                                                                  ||||
Sbjct  171  ----------------------------------------------------------------------GGTC  174

Query  267  AGTTGAACATACCGATGGTCAGAGTGTCCTAACAGACTCACTATGGCGGCGATATAGTGAATTTGAGTTGTTGA  340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  175  AGTTGAACATACCGATGGTCAGAGTGTCCTAACAGACTCACTATGGCGGCGATATAGTGAATTTGAGTTGTTGA  248

Query  341  GAAGCTACCTTTTAGTTTACTATCCACATATTGTTGTGCCACCTCTGCCAGAAAAACGGGCAGAATTTGTTTGG  414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  249  GAAGCTACCTTTTAGTTTACTATCCACATATTGTTGTGCCACCTCTGCCAGAAAAACGGGCAGAATTTGTTTGG  322

Query  415  CATAAACTCTCTGCTGACAACATGGATCCAGATTTTGTGGAGAGGCGACGGATTGGTTTAGAAAACTTTCTCTT  488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  323  CATAAACTCTCTGCTGACAACATGGATCCAGATTTTGTGGAGAGGCGACGGATTGGTTTAGAAAACTTTCTCTT  396

Query  489  GAGGATTGCTTCACATCCCATCCTTTGTAGAGACAAAATCTTCTATCTGTTTTTAACACAGGAAGGTAACTGGA  562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  397  GAGGATTGCTTCACATCCCATCCTTTGTAGAGACAAAATCTTCTATCTGTTTTTAACACAGGAAGGTAACTGGA  470

Query  563  AGGAGACTGTGAATGAAACTGGGTTTCAGCTGAAGGCAGACTCCAGGTTAAAAGCGCTTAATGCAACATTCAGA  636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  471  AGGAGACTGTGAATGAAACTGGGTTTCAGCTGAAGGCAGACTCCAGGTTAAAAGCGCTTAATGCAACATTCAGA  544

Query  637  GTGAAAAACCCAGACAAGAGATTTACTGACCTTAAGCACTATAGTGATGAACTGCAGTCTGTCATCTCACATCT  710
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  545  GTGAAAAACCCAGACAAGAGATTTACTGACCTTAAGCACTATAGTGATGAACTGCAGTCTGTCATCTCACATCT  618

Query  711  TCTTCGAGTCAGAGCTAGAGTAGCAGATCGACTCTATGGTGTATATAAAGTACATGGGAATTATGGTCGAGTTT  784
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  619  TCTTCGAGTCAGAGCTAGAGTAGCAGATCGACTCTATGGTGTATATAAAGTACATGGGAATTATGGTCGAGTTT  692

Query  785  TCAGTGAATGGAGTGCCATAGAAAAAGAAATGGGTGATGGACTGCAGAGTGCTGGTCATCATATGGATGTGTAT  858
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  693  TCAGTGAATGGAGTGCCATAGAAAAAGAAATGGGTGATGGACTGCAGAGTGCTGGTCATCATATGGATGTGTAT  766

Query  859  GCATCTTCTATTGATGATATTTTGGAAGATGAAGAACATTATGCAGATCAGTTAAAAGAGTATCTTTTTTATGC  932
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  767  GCATCTTCTATTGATGATATTTTGGAAGATGAAGAACATTATGCAGATCAGTTAAAAGAGTATCTTTTTTATGC  840

Query  933  AGAAGCATTGCGGGCTGTGTGCAGGAAACATGAACTTATGCAGTATGACTTGGAGATGGCTGCTCAGGACTTAG  1006
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  841  AGAAGCATTGCGGGCTGTGTGCAGGAAACATGAACTTATGCAGTATGACTTGGAGATGGCTGCTCAGGACTTAG  914

Query 1007  CATCCAAGAAGCAGCAGTGTGAGGAACTGGTAACTGGGACTGTGAGAACATTCTCTTTGAAGGGAATGACTACC  1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  915  CATCCAAGAAGCAGCAGTGTGAGGAACTGGTAACTGGGACTGTGAGAACATTCTCTTTGAAGGGAATGACTACC  988

Query 1081  AAGCTCTTTGGTCAAGAAACTCCAGAGCAGAGAGAAGCCAGAATAAAGGTGCTAGAAGAACAAATAAATGAAGG  1154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  989  AAGCTCTTTGGTCAAGAAACTCCAGAGCAGAGAGAAGCCAGAATAAAGGTGCTAGAAGAACAAATAAATGAAGG  1062

Query 1155  AGAACAACAGCTAAAGTCTAAAAATCTGGAAGGCAGAGAATTTGTGAAAAACGCATGGGCTGATATTGAACGCT  1228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063  AGAACAACAGCTAAAGTCTAAAAATCTGGAAGGCAGAGAATTTGTGAAAAACGCATGGGCTGATATTGAACGCT  1136

Query 1229  TCAAAGAACAAAAGAACCGAGACTTAAAGGAGGCCCTCATAAGCTATGCAGTCATGCAGATCAGTATGTGCAAA  1302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137  TCAAAGAACAAAAGAACCGAGACTTAAAGGAGGCCCTCATAAGCTATGCAGTCATGCAGATCAGTATGTGCAAA  1210

Query 1303  AAGGGAATTCAAGTTTGGACCAATGCTAAGGAATGCTTTAGCAAGATG--------------------------  1350
            ||||||||||||||||||||||||||||||||||||||||||||||||                          
Sbjct 1211  AAGGGAATTCAAGTTTGGACCAATGCTAAGGAATGCTTTAGCAAGATGTAATCCTGTGAATTGAATTTCTCTTC  1284

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 1285  AATCAAAGTGCCCCAAAACAGAAGCACAAGTAAATAAAAGAAATTTAAGTCACTACCTAGTATACATAAACATA  1358

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 1359  TACAATAAGTTAAATAAATTCAGCTTTCTTTAACTTAATTGTGGTCGTGTTAATGTAGCACAAAAAATATATTT  1432

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 1433  TAATGAAGATTAAATATTATAATTTGAGGTTTTGGGGACTGGTGCTGATTCCAAAAAGTTAATTTAATAATATA  1506

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 1507  TACCAACAGATTGTTTGTCACGCTTCTGAACCAATGACTGAATGTCAAGATGTTCGTTAATTTCTAGATGTTTG  1580

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 1581  TTTCAAGACCAGCTGTTTCAGATCTATTAATGTAGGGAATTTTTCCCTAAGATTGAATTCCTATATTTACTTGG  1654

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 1655  TAAGATCCACTAATCTGTTATAGGGAGTTGTTTTCTCTTGCCTTATAGTTGAGCTATTTGGTTTGACAAAGCTC  1728

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 1729  AGCAGAAACTTGATGTGAAAAATCTACGATTTTCTTCTACATTCATTGATGCCCCTTGTAATGTTTGCATACAC  1802

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 1803  TAGAAAATGCCTTCAATTTGTGTTTTACCAGAATTTTGATACTGGTCAGAAATTTTATACTGCCAACAAAGAAG  1876

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 1877  ACTCAACTTCTCAGATCTATAATGGGATACATTGTCATCCTCTAGCAACTCCTATATAGAAAGTTTTAACTGAA  1950

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 1951  TATGTTACATATAAGAATTAAATTCTTCTCAAATAATTCTTAACCTCAGTAATGAGCCTAAATTTACTCTGCTT  2024

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2025  GGCTCTCTACACATGGCATTTCAGGGTATAAGATGTAGCATTTCAATGTGTAAGATATATGTACTAAACATATG  2098

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2099  TGTTGCTATCTTCATCATTAACATCCTTCTTTTCTATTGCTTGGCTGTAATTTTTGTAAAGATAAATTATATTG  2172

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2173  TTTTTTTGTATGTGTGTTTGTAGTATATGTTCAGAAGGCAAGCATCTTCATTTTGCTAGCTTTGCAGAATCTTA  2246

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2247  AAATGTGTACTCGTTATTTCTAATGATGTAAAAAAAAATCCCTAGTCCTGTTTAGCATTTGACTTTTTTATATG  2320

Query 1351  ----------------------------------------------------------------------  1350
                                                                                  
Sbjct 2321  TTTTAAATGTTGCTGGATTTTTGTGCTGTTTGCCAAACTTATACAATAAATAAATGAAATATTGTGCTGA  2390

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