Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02313
- Subject:
- NR_102318.1
- Aligned Length:
- 5708
- Identities:
- 1129
- Gaps:
- 4579
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGCCGGGGCGTCGGCACCGGCGGCCATCTTGGCTTCCCGGGGAAAGGCGGCGTGAGGGGAAGAAGTTGTAGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGGGGCAGGAGTGAGGAGGAGGGAAGAGAGAGGGGGAGGAGGCCGCGGCGGGGCAGGGCGGGGACTGCCTGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGCCTGGGTTGCGGAAGTGATAGCCGCCGACCGAGCCTGCTGCTTTCTTGCTACTGCTTCGGCTTCCCGGCTAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCCCGGACGGTGAAGGCGGCCCAGCTGTGGATGGTCAGATAGCCCTTGTCTCCCGCCGCCAATCTCTGGCCCC 296
Query 1 --------------------------------------------------ATGGCGGGACGGCTGCCGGCCTGT 24
||||||||||||||||||||||||
Sbjct 297 TAGCAGCACGGAGCAGACGGCGGCAGCAGCAGCAGCAGGCGAGGAGGAAGATGGCGGGACGGCTGCCGGCCTGT 370
Query 25 GTGGTGGACTGTGGCACGGGGTATACAAAACTAGGATATGCTGGAAATACAGAACCACAGTTTATCATCCCTTC 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTGGTGGACTGTGGCACGGGGTATACAAAACTAGGATATGCTGGAAATACAGAACCACAGTTTATCATCCCTTC 444
Query 99 CTGTATTGCTATTAAGGAGTCAGCAAAAGTGGGTGATCAAGCTCAAAGGAGGGTGATGAAAGGTGTTGATGACC 172
||
Sbjct 445 CT------------------------------------------------------------------------ 446
Query 173 TAGACTTCTTCATTGGTGATGAAGCAATAGAAAAACCTACATATGCAACAAAGTGGCCAATCCGCCATGGTATA 246
|||||||||||||||||||||
Sbjct 447 -----------------------------------------------------TGGCCAATCCGCCATGGTATA 467
Query 247 GTTGAAGATTGGGACTTAATGGAAAGGTTTATGGAGCAAGTGATCTTTAAATATTTAAGGGCAGAACCTGAAGA 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GTTGAAGATTGGGACTTAATGGAAAGGTTTATGGAGCAAGTGATCTTTAAATATTTAAGGGCAGAACCTGAAGA 541
Query 321 CCATTATTTTCTTTTGACTGAACCTCCATTGAATACTCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CCATTATTTTCTTTTGACTGAACCTCCATTGAATACTCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTG 615
Query 395 AGTCCTTCAATGTTCCAGGCTTGTACATTGCTGTGCAGGCTGTTCTTGCCTTAGCTGCATCTTGGACCTCAAGA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 AGTCCTTCAATGTTCCAGGCTTGTACATTGCTGTGCAGGCTGTTCTTGCCTTAGCTGCATCTTGGACCTCAAGA 689
Query 469 CAAGTAGGAGAACGGACGTTGACCGGTACGGTAATAGACAGTGGAGATGGTGTCACTCATGTCATTCCTGTGGC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CAAGTAGGAGAACGGACGTTGACCGGTACGGTAATAGACAGTGGAGATGGTGTCACTCATGTCATTCCTGTGGC 763
Query 543 TGAAGGGTATGTGATTGGCAGCTGTATTAAACACATTCCAATCGCAGGACGAGATATAACATATTTTATTCAGC 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TGAAGGGTATGTGATTGGCAGCTGTATTAAACACATTCCAATCGCAGGACGAGATATAACATATTTTATTCAGC 837
Query 617 AACTGCTGAGAGACCGAGAAGTAGGAATCCCTCCAGAACAATCCTTGGAAACTGCTAAGGCAGTAAAGGAGCGC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AACTGCTGAGAGACCGAGAAGTAGGAATCCCTCCAGAACAATCCTTGGAAACTGCTAAGGCAGTAAAGGAGCGC 911
Query 691 TATAGTTATGTCTGCCCAGATTTAGTAAAAGAATTTAACAAGTATGATACAGATGGGTCAAAATGGATTAAACA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TATAGTTATGTCTGCCCAGATTTAGTAAAAGAATTTAACAAGTATGATACAGATGGGTCAAAATGGATTAAACA 985
Query 765 GTATACTGGAATCAATGCTATCTCAAAGAAAGAGTTTTCTATCGATGTTGGTTATGAGAGATTTTTGGGACCTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GTATACTGGAATCAATGCTATCTCAAAGAAAGAGTTTTCTATCGATGTTGGTTATGAGAGATTTTTGGGACCTG 1059
Query 839 AAATCTTTTTTCATCCAGAGTTTGCTAATCCAGACTTTACACAACCTATCTCAGAAGTTGTAGATGAAGTAATT 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AAATCTTTTTTCATCCAGAGTTTGCTAATCCAGACTTTACACAACCTATCTCAGAAGTTGTAGATGAAGTAATT 1133
Query 913 CAGAATTGTCCTATTGATGTCAGACGTCCTCTCTACAAGAATATTGTCCTCTCTGGAGGTTCAACCATGTTCAG 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CAGAATTGTCCTATTGATGTCAGACGTCCTCTCTACAAGAATATTGTCCTCTCTGGAGGTTCAACCATGTTCAG 1207
Query 987 GGACTTTGGACGTCGCTTGCAAAGAGATTTGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGGAATTGA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 GGACTTTGGACGTCGCTTGCAAAGAGATTTGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGGAATTGA 1281
Query 1061 GTGGTGGTAGATTGAAGCCAAAACCTATTGATGTACAAGTCATTACACACCACATGCAGCGATATGCAGTTTGG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GTGGTGGTAGATTGAAGCCAAAACCTATTGATGTACAAGTCATTACACACCACATGCAGCGATATGCAGTTTGG 1355
Query 1135 TTTGGAGGATCAATGCTGGCTTCCACGCCTGAGTTCTACCAAGTATGCCACACCAAAAAGGATTATGAAGAAAT 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 TTTGGAGGATCAATGCTGGCTTCCACGCCTGAGTTCTACCAAGTATGCCACACCAAAAAGGATTATGAAGAAAT 1429
Query 1209 TGGACCTAGCATTTGTCGTCACAATCCAGTGTTTGGAGTCATGTCG---------------------------- 1254
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TGGACCTAGCATTTGTCGTCACAATCCAGTGTTTGGAGTCATGTCGTAAAATTGGCTTCATAGTTATTGGGGTT 1503
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 1504 AGGGAGGTGGGGAAGAGATAATCTTTCTGATTACCTGTTTTGTCTGGATGGCTGGTTTTGAGGTTTTAAACCTG 1577
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 1578 ACTTGAAATAGTAACACCAAACATGATTATACAGGAATATTTTAATAAGTGTATCACCATGCAGATGTAGAAGA 1651
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 1652 GAGCGAAAGTGATTGTGTTTTTCTTTAGATTGAATATTTGAATCTTATGTGTAACAAAAAGAAGTGGGTTTTAG 1725
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 1726 TTCTTTCTGTGCCCTGATATTTTGTATATTAATGAATTATCCAAGATTCGATGGGATTTATCAGTGTGTAGATA 1799
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 1800 GCTCTATAATGCTTGAATTGTACACTTCTAAGTGTGCAGTGCAAGAGCTTGTTTATATTTCATACTTTTTATAC 1873
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 1874 TTTGAGGAAAAAAAGTCAAAGAAAAATTGTATTTGAGGGAAAAAACCATGACCAAGTAAAGGATAAATTCAAAA 1947
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 1948 AATAGCCTCATGAGACTTGGCATACACACTCGTGGGATTCCAGTTATTATGGAGTGCTTCCATCCCTCTCCACC 2021
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2022 CCTTCCCCCCAAAAGGTTTTCTTTGCAAGTGCTTTTGGAACTAAGAGCTAGTATCTTGGATTAACTGATGCCTG 2095
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2096 CTAGTGCTTTCTGATTACTCGCATTCTGTTTCTTGCTTTAAAAGAAGAGTAAAGACAAGAGTGTTGGACCAGTA 2169
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2170 TTGCAGTTCTGTAGTGTCATTTCTTATAAAAAACAAAACAACAACAATAATTTATCAAAATTGGCATATTTAAA 2243
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2244 GCCTAACATTCTAATAAAGGCACAAATTTCTTTTTAATACTTGTTTCAGCCTCTTTAATCTCTTTATAAGTTAA 2317
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2318 CTAATAAATCTATTTTCTTCAGACTTCTGCAATAGTTCTTTAAAATCACAACAGTTAGCAAGCTGACTTTTGTA 2391
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2392 ATGTGCTCAATACAAATACTTGTGAACTTTTAATATGTTGAGTGCTTTCATTTTGATAACTGGATCTCCATTTG 2465
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2466 ATATTTTCATTTGTATAACTCATTTGCAGTCTGAAAATTTTTTTTAGTGCCAGTCCCTGAACATATCATTGAAA 2539
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2540 GTTAATTTTCTTTGCATTTTAAAATATCTGGATTATGAAGAAAAAGTGATGAAAATAAATTAAAACTGAATTAC 2613
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2614 CTTTTCTAATGTTTTTTTTTTTTAAGTAATGTAATTCTATTTTGTTTTTATGTATGTGATATCTGTTTCTGTTG 2687
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2688 AGATTTGGGAGTTATTGAAATCTCTGTAATGTGTATGGTAGAAAATTTCTTGTGACCTTAAAATTTTACCAGTT 2761
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2762 ATTTATAGAAAGAGAAAATGGGAAATGTTTTATAGGCTTTTTACTAGCAGTATCAGTGAACACTTGAACTCCAT 2835
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2836 TATTCATGAAAATAACACGTTAGGATTGGAATACGTCTATTCAAAAGTGAAAGAATATAAAGTGTTTAGTTTTT 2909
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2910 TGTTTTTACTCTAAAGATAGAATTGGGGAGTAAACTTCAGTTTTTGTTTAGAGTGGATCTGAATATTTAAAATC 2983
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 2984 CTATAATAATTTTTGTGAATCTTCATTCTTTGAGTATGGGATTGTAAAAGACAAACTATATCCTACAGTAGTAT 3057
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3058 CATCATCAGTATCAAAGGTCTCCTTTTTTTACTTGGAAAAGTAATTCACAAACATTATAAAAATACTATTCAAA 3131
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3132 CAGTACCAAAGAGTAGATTAGCAAAAGTAAGTTTTTTTCCCTAGCCTGTCTCATTTTTCCATCATTACACAGAC 3205
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3206 TACTTGGAATGTCTTAGATGTCCTTGTATTGTAATTTTCTGTGTAGGTAGAAATAAATGTAGCTTTCTTATTTT 3279
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3280 ACACAAATAGGAACTTACTGTATATACTGTTCTGCACTTTGCTTTTATTAAAGATCTTTTGATAAAGAACTATA 3353
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3354 TTGATAAGCAGTAAAGATGTCATGCTCCTGGCCCAATAAAATATTGTTAGCATTGTCATAAATATGTCTTTTCC 3427
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3428 ACCGGCGATGGTTGGGTAGTTAAGTGAATAAGCTAGAAAGACATGTTTATAAAGCTATTTGATGACAATCTCAG 3501
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3502 GCATATTTATACAGAGATGTTCTTAACTGTTTGCTACAAAAACATGAAGATCAAAAACTTTCTTGAAGCTTACG 3575
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3576 CTTAACTTATTTGGGGAAACAAAACTCCAGCCCTTCTTGTGTATGTTCTGATATCCCTTTGCTCTACTTTTAGA 3649
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3650 GGAGTGAACCCTAATAGGATGGTAGCAGCATTCTTGTTTCTTTATATCTCTCCTCTGTGATTGTATACCGTTTT 3723
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3724 TTCAACTTAAAGCAACTTCAGCTGGAAATATGTAGAGGTTGGCCAAGGTGAACTAAATAGTCTGTAACATTGAT 3797
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3798 TAGATATCAAGCAACGTGAGCATGGTAGCAAAAGCACTAACTGAAGCCAGTGATTTAATTTTTAATTCTGATTC 3871
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3872 TGATAATTGATGATATAGCTCCTCGAACTTTGTTTTTTGTTAAAACTTGGAAAATATATTTGTATTATTTTGGA 3945
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 3946 CAAATTATTTGAACTCTCTGGACCTTGATTCAATTTATATATAAGGTAAAGGCATTATACTGGATTATCCTGCA 4019
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4020 ATTTCTTTGAGTTGTTAGAATATAATGTAGCTTATTAATAGCAATATTAGCAGTGTAGTAGATTCTGACTGCAA 4093
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4094 AACCTAGCCTTTTCTATTGATTCATTAGTGGTAGTAAAGGTATTATCTGATTTATCCTTTTTAATAGGCAGTGC 4167
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4168 TTTGATCAAGTGGGAAATAGTAATGGACAAATAAAATCAATGATCATTATCTAACTTGATGCCTGCTTTTCAAA 4241
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4242 AAGTGAGCAAATTTCACATCTTCACCCTTAGACATTAATTCATGGCACCTACTATAAGTACTCATCCTCTTCTT 4315
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4316 ACCTATCTTCTTTTCTATAGGAGATAAAGTGGTTATTCAGACCCCCCAATACAATTTTTTGGTTTGTTTTCACA 4389
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4390 GCTACTTAAAAGATTAAAATAACTATTCTTGCAGATATTTCTAGGAATATTTTTAGAAATAATATGAAATACAG 4463
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4464 GGATAATAGGCCAATTATGATCTTTATTTTTAATTTCTACAGAAAAGTACTAGAGAATATATCTATAGAAACTT 4537
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4538 CTTTCAGATAACCCTAAAGATGATACTAGAATGTTTATAAAATTATTGAGAAGATTATTTGTGTTATAAAGCTT 4611
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4612 ATTTGTACCATAGTAAAGGATGTTTTTGTTCCTCTTCATTCTGGGCTAATCTGTCAATACTGAAGTCCAGTCTT 4685
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4686 TTCCCCCTTTTCTTACCAGCTCAACCTTGATTCCTGTGACCCATTCTTTCTGATCTTTCGTAGTTCATAGTCAC 4759
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4760 CAGGCATGAGTACCTTGGATAGCCCTCTGAAGTCTGTTACCACCCAGATTTCCAACTCGGGTTAATTGGTACTA 4833
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4834 ATTCTATTAGCTGGTATAAATAATCCAAAATCTGTGCAGACTCTGGGAGCAAAATGTTCTACTCAGTTTGGAAT 4907
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4908 ACTGTGCCTTAAAATATATTTCATTGTAACAGCACCTTGTATATATAGTTGGCCAAGGACAGAGTTGTTACAAG 4981
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 4982 TTACGTGGAACTTTCATAGCAAATCTTGACAGTAAATACCTTGTTCTTGTATTAGGTCTATATCCTGAATTGAC 5055
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 5056 CTTTAGCAAGAATCTTTAGATCTGCTGGAGGGCTGGGATGGCTTTTGGACTTCAGTGAAAAAGAATTTCTGCTA 5129
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 5130 CTCATTGTTGATAACGCTTCAGTACTGTATAAATGTTTATCCTTTTCCACGTAATTTGTTTTCTATGATATGAG 5203
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 5204 AACTTTTATTATAATTTGCCTCAGTCTTGATAGAATCTTAACAAAAATAAAATCTGTGGTCGTCTGAGGTATTC 5277
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 5278 TCCATGCTATAACCCAGTTTAGCTGATGCATTTGGAGCTTGGGTGCTGAAATTAAATATAACCTATTTGAGTTA 5351
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 5352 AGGATTTATTACTAGTGCTCCAGTGGTCACAGGAACAATAAAAAAGGAACAACGATAGAAATACGTGATCTAGG 5425
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 5426 AAAGAAGGCAACTGAAAAACCTGAAAGAAAAAAAATGAAAGATTAAAAGTATACGATATTCTATTTTGATTTAG 5499
Query 1255 -------------------------------------------------------------------------- 1254
Sbjct 5500 CAATTACTTGTTTTCTAGTGTTCTGTCAATTTTTGGTGACTTTTATAATTACATTAAAACTAAGATGCTGAATT 5573
Query 1255 ---------- 1254
Sbjct 5574 AAAAAAAAAA 5583