Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02754
- Subject:
- NM_001287811.1
- Aligned Length:
- 2346
- Identities:
- 1410
- Gaps:
- 936
Alignment
Query 1 ATGGAAGTGAGAAAGTTGAGCATTTCCTGGCAGTTCTTGATAGTTCTGGTTCTGATCCTGCAAATTCTGTCTGC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GTTGGATTTTGACCCATACAGAGTCCTAGGGGTCAGCCGAACAGCCAGTCAGGCTGATATTAAAAAGGCTTATA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 AGAAGCTCGCCCGGGAATGGCATCCTGACAAAAACAAAGATCCTGGAGCAGAAGACAAGTTCATTCAAATCAGT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 AAGGCTTACGAGATTCTTTCAAATGAAGAAAAGAGATCAAATTATGATCAATATGGAGACGCTGGAGAGAACCA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 GGGCTACCAGAAGCAGCAACAGCAGCGAGAGTATCGCTTCCGCCATTTCCATGAAAATTTTTATTTTGATGAAT 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 CCTTTTTTCACTTCCCTTTTAATTCTGAACGGCGGGACTCAATTGACGAAAAGTATTTATTGCACTTTTCACAT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TATGTGAATGAAGTGGTTCCAGATAGCTTCAAGAAACCCTACCTCATCAAGATCACCTCCGATTGGTGCTTTAG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 CTGCATTCATATCGAGCCTGTGTGGAAAGAAGTCATTCAAGAACTGGAAGAATTGGGTGTAGGAATTGGCGTGG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 TCCATGCTGGGTATGAGAGACGCCTGGCCCATCACCTAGGGGCACACAGCACGCCCTCTATCCTAGGAATCATT 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 AACGGGAAAATCTCCTTCTTCCACAATGCAGTTGTCCGTGAAAATCTGCGACAATTTGTAGAAAGTCTTCTTCC 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 AGGGAACTTGGTGGAGAAAGTTACAAATAAAAATTACGTCAGATTCCTCTCTGGCTGGCAGCAAGAGAATAAGC 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 CTCATGTCCTTCTGTTTGACCAAACGCCCATTGTGCCACTGTTATACAAGTTGACTGCCTTTGCATACAAAGAT 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 TATTTATCATTTGGATATGTATATGTGGGTTTGAGAGGGACGGAAGAGATGACAAGGCGGTACAACATCAATAT 962
||||||||||||||||||||||||||
Sbjct 1 ------------------------------------------------ATGACAAGGCGGTACAACATCAATAT 26
Query 963 CTACGCCCCTACCCTCTTGGTCTTTAAAGAACATATAAACAGGCCTGCCGATGTTATCCAGGCCCGAGGTATGA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 CTACGCCCCTACCCTCTTGGTCTTTAAAGAACATATAAACAGGCCTGCCGATGTTATCCAGGCCCGAGGTATGA 100
Query 1037 AGAAGCAAATCATTGACGACTTCATCACCCGAAACAAATATCTATTGGCAGCCAGGCTCACCAGCCAGAAGTTG 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 AGAAGCAAATCATTGACGACTTCATCACCCGAAACAAATATCTATTGGCAGCCAGGCTCACCAGCCAGAAGTTG 174
Query 1111 TTCCATGAACTCTGCCCTGTGAAACGGTCGCATCGACAGAGGAAGTACTGTGTGGTTTTATTGACTGCTGAGAC 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TTCCATGAACTCTGCCCTGTGAAACGGTCGCATCGACAGAGGAAGTACTGTGTGGTTTTATTGACTGCTGAGAC 248
Query 1185 TACCAAGTTGAGCAAACCCTTTGAGGCTTTCCTGTCCTTTGCCCTGGCAAACACTCAAGACACAGTGAGATTTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 TACCAAGTTGAGCAAACCCTTTGAGGCTTTCCTGTCCTTTGCCCTGGCAAACACTCAAGACACAGTGAGATTTG 322
Query 1259 TGCATGTCTACAGCAATCGGCAGCAGGAGTTTGCCGACACCTTACTACCAGACAGTGAGGCGTTTCAAGGGAAA 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TGCATGTCTACAGCAATCGGCAGCAGGAGTTTGCCGACACCTTACTACCAGACAGTGAGGCGTTTCAAGGGAAA 396
Query 1333 TCAGCGGTGTCTATTTTAGAAAGGCGCAACACAGCAGGAAGGGTGGTGTATAAAACCCTGGAAGACCCTTGGAT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TCAGCGGTGTCTATTTTAGAAAGGCGCAACACAGCAGGAAGGGTGGTGTATAAAACCCTGGAAGACCCTTGGAT 470
Query 1407 TGGGAGTGAGAGTGACAAATTTATCCTCTTGGGCTATCTCGACCAGCTGCGTAAAGATCCAGCTCTTCTGTCCT 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGGGAGTGAGAGTGACAAATTTATCCTCTTGGGCTATCTCGACCAGCTGCGTAAAGATCCAGCTCTTCTGTCCT 544
Query 1481 CTGAAGCAGTGCTTCCTGACCTGACCGATGAACTTGCCCCTGTTTTTCTCCTTCGATGGTTCTACTCTGCTTCT 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CTGAAGCAGTGCTTCCTGACCTGACCGATGAACTTGCCCCTGTTTTTCTCCTTCGATGGTTCTACTCTGCTTCT 618
Query 1555 GACTACATCTCAGACTGCTGGGATAGCATTTTTCACAACAACTGGAGGGAAATGATGCCCCTGCTGTCCCTGAT 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GACTACATCTCAGACTGCTGGGATAGCATTTTTCACAACAACTGGAGGGAAATGATGCCCCTGCTGTCCCTGAT 692
Query 1629 CTTCTCTGCCCTCTTCATCCTCTTCGGCACTGTCATCGTTCAGGCTTTCAGCGACTCTAATGATGAGCGAGAGT 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CTTCTCTGCCCTCTTCATCCTCTTCGGCACTGTCATCGTTCAGGCTTTCAGCGACTCTAATGATGAGCGAGAGT 766
Query 1703 CAAGCCCTCCAGAAAAAGAGGAAGCCCAAGAGAAGACTGGGAAAACTGAGCCAAGCTTCACCAAAGAAAACAGC 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CAAGCCCTCCAGAAAAAGAGGAAGCCCAAGAGAAGACTGGGAAAACTGAGCCAAGCTTCACCAAAGAAAACAGC 840
Query 1777 AGCAAGATTCCTAAAAAAGGCTTTGTGGAGGTAACTGAACTCACAGATGTAACATACACCAGTAACTTGGTACG 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGCAAGATTCCTAAAAAAGGCTTTGTGGAGGTAACTGAACTCACAGATGTAACATACACCAGTAACTTGGTACG 914
Query 1851 TCTGAGGCCAGGCCACATGAATGTGGTCCTCATCCTGTCGAATTCTACCAAGACCAGCCTACTACAGAAATTTG 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TCTGAGGCCAGGCCACATGAATGTGGTCCTCATCCTGTCGAATTCTACCAAGACCAGCCTACTACAGAAATTTG 988
Query 1925 CTTTGGAGGTCTACACATTTACTGGGAGCAGCTGCCTACACTTCTCCTTCCTGAGTCTAGATAAACACAGAGAA 1998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CTTTGGAGGTCTACACATTTACTGGGAGCAGCTGCCTACACTTCTCCTTCCTGAGTCTAGATAAACACAGAGAA 1062
Query 1999 TGGCTAGAATACTTACTAGAATTTGCTCAAGATGCAGCTCCAATCCCAAACCAATATGATAAGCATTTCATGGA 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TGGCTAGAATACTTACTAGAATTTGCTCAAGATGCAGCTCCAATCCCAAACCAATATGATAAGCATTTCATGGA 1136
Query 2073 GCGTGACTACACTGGTTATGTACTGGCTCTGAATGGCCACAAGAAATACTTCTGCCTCTTCAAGCCCCAAAAGA 2146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GCGTGACTACACTGGTTATGTACTGGCTCTGAATGGCCACAAGAAATACTTCTGCCTCTTCAAGCCCCAAAAGA 1210
Query 2147 CAGTCGAAGAGGAGGAAGCCATAGGGTCGTGCAGTGATGTTGACTCTTCCCTCTACCTGGGTGAATCTCGAGGG 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 CAGTCGAAGAGGAGGAAGCCATAGGGTCGTGCAGTGATGTTGACTCTTCCCTCTACCTGGGTGAATCTCGAGGG 1284
Query 2221 AAACCTTCCTGTGGCCTTGGATCCAGGCCCATCAAAGGAAAGTTGAGCAAGCTCTCTTTATGGATGGAACGCCT 2294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 AAACCTTCCTGTGGCCTTGGATCCAGGCCCATCAAAGGAAAGTTGAGCAAGCTCTCTTTATGGATGGAACGCCT 1358
Query 2295 GCTGGAGGGCTCCTTACAGAGGTTTTATATCCCATCATGGCCTGAACTAGAC 2346
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GCTGGAGGGCTCCTTACAGAGGTTTTATATCCCATCATGGCCTGAACTAGAC 1410
