Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02754
Subject:
NM_172338.2
Aligned Length:
2348
Identities:
1934
Gaps:
34

Alignment

Query    1  ATGGAAGTGAGAAAGTTGAGCATTTCCTGGCAGTTCTTGATAGTTCTGGTTCTGATCCTGCAAATTCTGTCTGC  74
            ||||||.|||.||.||||.||.|.|||||||..||||||||.||||||||||||||||||||||..||||||||
Sbjct    1  ATGGAATTGAAAAGGTTGGGCGTGTCCTGGCGATTCTTGATGGTTCTGGTTCTGATCCTGCAAAGCCTGTCTGC  74

Query   75  GTTGGATTTTGACCCATACAGAGTCCTAGGGGTCAGCCGAACAGCCAGTCAGGCTGATATTAAAAAGGCTTATA  148
            .||||||||||||||||||||||||||||||||||||||.||.||||||||||||||.|||||||||||.||||
Sbjct   75  ATTGGATTTTGACCCATACAGAGTCCTAGGGGTCAGCCGCACGGCCAGTCAGGCTGACATTAAAAAGGCATATA  148

Query  149  AGAAGCTCGCCCGGGAATGGCATCCTGACAAAAACAAAGATCCTGGAGCAGAAGACAAGTTCATTCAAATCAGT  222
            ||||||||||.|||||||||||||||||||||||||||||.||||||||.||.||||.|||||||||.|||||.
Sbjct  149  AGAAGCTCGCTCGGGAATGGCATCCTGACAAAAACAAAGACCCTGGAGCCGAGGACAGGTTCATTCAGATCAGC  222

Query  223  AAGGCTTACGAGATTCTTTCAAATGAAGAAAAGAGATCAAATTATGATCAATATGGAGACGCTGGAGAGAACCA  296
            |||||.||||||||.||.||.|||||.||||||||..||||.||.||.||.|||||.||.||.||.||||||||
Sbjct  223  AAGGCATACGAGATCCTGTCCAATGAGGAAAAGAGGACAAACTACGACCACTATGGTGATGCCGGTGAGAACCA  296

Query  297  GGGCTACCAGAAGCAGCAACAGCAGCGAGAGTATCGCTTCCGCCATTTCCATGAAAATTTTTATTTTGATGAAT  370
            .||||||||||||      ||||||||.||..|.|||||||||||||||||.||.||.||.|||||||||||.|
Sbjct  297  AGGCTACCAGAAG------CAGCAGCGCGAACACCGCTTCCGCCATTTCCACGAGAACTTCTATTTTGATGAGT  364

Query  371  CCTTTTTTCACTTCCCTTTTAATTCTGAACGGCGGGACTCAATTGACGAAAAGTATTTATTGCACTTTTCACAT  444
            |||||||.||||||||.||.|||.|.||.|||||||||||...||||||.|||||.||..|||||||.|||||.
Sbjct  365  CCTTTTTCCACTTCCCCTTCAATGCGGAGCGGCGGGACTCGGGTGACGAGAAGTACTTGCTGCACTTCTCACAC  438

Query  445  TATGTGAATGAAGTGGTTCCAGATAGCTTCAAGAAACCCTACCTCATCAAGATCACCTCCGATTGGTGCTTTAG  518
            ||.||||||||||||.||||.||.||||||||.|.|||||||||||||||||||||.||.||.||||||||.||
Sbjct  439  TACGTGAATGAAGTGCTTCCCGAGAGCTTCAAAAGACCCTACCTCATCAAGATCACGTCAGACTGGTGCTTCAG  512

Query  519  CTGCATTCATATCGAGCCTGTGTGGAAAGAAGTCATTCAAGAACTGGAAGAATTGGGTGTAGGAATTGGCGTGG  592
            ||||||.||||||||||||||.|||||.||.||..|.||.||||||||||.|.|||||||.||.|||||.||.|
Sbjct  513  CTGCATCCATATCGAGCCTGTCTGGAAGGAGGTGGTCCAGGAACTGGAAGGACTGGGTGTGGGGATTGGTGTCG  586

Query  593  TCCATGCTGGGTATGAGAGACGCCTGGCCCATCACCTAGGGGCACACAGCACGCCCTCTATCCTAGGAATCATT  666
            ||||.||||||||.||.||.|||||||||||||||||.||.|||||||||||.|||||.|||||.||..||||.
Sbjct  587  TCCACGCTGGGTACGAAAGGCGCCTGGCCCATCACCTGGGAGCACACAGCACCCCCTCCATCCTTGGGGTCATC  660

Query  667  AACGGGAAAATCTCCTTCTTCCACAATGCAGTTGTCCGTGAAAATCTGCGACAATTTGTAGAAAGTCTTCTTCC  740
            |..|||||.|||.|||||||||||||.|||||.||||.||||||.||.||.||.||.||.||.||||||||.||
Sbjct  661  AGTGGGAAGATCACCTTCTTCCACAACGCAGTGGTCCATGAAAACCTACGGCAGTTCGTGGAGAGTCTTCTCCC  734

Query  741  AGGGAACTTGGTGGAGAAAGTTACAAATAAAAATTACGTCAGATTCCTCTCTGGCTGGCAGCAAGAGAATAAGC  814
            |||.||||||||.|||||.||.||||||||||||||.||..|.||||||||||||||||||||.||||||||||
Sbjct  735  AGGAAACTTGGTAGAGAAGGTCACAAATAAAAATTATGTGCGGTTCCTCTCTGGCTGGCAGCAGGAGAATAAGC  808

Query  815  CTCATGTCCTTCTGTTTGACCAAACGCC--CATTGTGCCACTGTTATACAAGTTGACTGCCTTTGCATACAAAG  886
            |.||.|.|||.|||||.|.|||.||.||  ||  |||||||||.|.|||||||||||.|||||.||||||||.|
Sbjct  809  CACACGCCCTCCTGTTCGGCCAGACACCAGCA--GTGCCACTGATGTACAAGTTGACGGCCTTCGCATACAAGG  880

Query  887  ATTATTTATCATTTGGATATGTATATGTGGGTTTGAGAGGGACGGAAGAGATGACAAGGCGGTACAACATCAAT  960
            |||||.|.||.||||||||.||.|||||.||.||||||||...||||||||||||.||||.|||||||.||||.
Sbjct  881  ATTATGTGTCGTTTGGATACGTGTATGTCGGCTTGAGAGGTGTGGAAGAGATGACCAGGCAGTACAACGTCAAC  954

Query  961  ATCTACGCCCCTACCCTCTTGGTCTTTAAAGAACATATAAACAGGCCTGCCGATGTTATCCAGGCCCGAGGTAT  1034
            .||||..||||.|||.|..|..||||.|||||.||.|||||||.|||.||.|||||.||||||||.||.||..|
Sbjct  955  CTCTATACCCCCACCATGCTCATCTTCAAAGAGCACATAAACAAGCCCGCTGATGTGATCCAGGCTCGGGGACT  1028

Query 1035  GAAGAAGCAAATCATTGACGACTTCATCACCCGAAACAAATATCTATTGGCAGCCAGGCTCACCAGCCAGAAGT  1108
            |||||||||..||||.||.|||||||||.|||.||||||.||.||..||||..||.|||||||||||||||.||
Sbjct 1029  GAAGAAGCAGGTCATCGAGGACTTCATCGCCCAAAACAAGTACCTGCTGGCCTCCCGGCTCACCAGCCAGAGGT  1102

Query 1109  TGTTCCATGAACTCTGCCCTGTGAAACGGTCGCATCGACAGAGGAAGTACTGTGTGGTTTTATTGACTGCTGAG  1182
            |||||||||||||||||||||||||.|||||.||.||||||||.||.|||||.|||||||||.||||.||||||
Sbjct 1103  TGTTCCATGAACTCTGCCCTGTGAAGCGGTCTCACCGACAGAGAAAATACTGCGTGGTTTTACTGACAGCTGAG  1176

Query 1183  ACTACCAAGTTGAGCAAACCCTTTGAGGCTTTCCTGTCCTTTGCCCTGGCAAACACTCAAGACACAGTGAGATT  1256
            ||||.|||..||||||||||||||||.||.||||||||.||||||||||||||||||||||||||.||..|.||
Sbjct 1177  ACTAACAAAGTGAGCAAACCCTTTGAAGCCTTCCTGTCATTTGCCCTGGCAAACACTCAAGACACGGTACGGTT  1250

Query 1257  TGTGCATGTCTACAGCAATCGGCAGCAGGAGTTTGCCGACACCTTACTACCAGACAGTGAGGCGTTTCAAGGGA  1330
            .|||||||||||||||||.||.|||||||||||||||..|||.||.|||||.||||..||.||.||.||.||||
Sbjct 1251  CGTGCATGTCTACAGCAACCGACAGCAGGAGTTTGCCAGCACATTGCTACCGGACATGGAAGCTTTCCAGGGGA  1324

Query 1331  AATCAGCGGTGTCTATTTTAGAAAGGCGCAACACAGCAGGAAGGGTGGTGTATAAAACCCTGGAAGACCCTTGG  1404
            |.||||.||||||.||.||.||||||.|.||||||||.||.||||||||||..|||||||||||.||.||.|||
Sbjct 1325  AGTCAGGGGTGTCCATCTTGGAAAGGAGGAACACAGCGGGGAGGGTGGTGTTCAAAACCCTGGAGGATCCCTGG  1398

Query 1405  ATTGGGAGTGAGAGTGACAAATTTATCCTCTTGGGCTATCTCGACCAGCTGCGTAAAGATCCAGCTCTTCTGTC  1478
            |..||.||||||||.||.||.||..||||.|||||.|||||.|||||||||||.||.||||||||..|||||||
Sbjct 1399  ACCGGCAGTGAGAGCGATAAGTTCGTCCTTTTGGGTTATCTTGACCAGCTGCGGAAGGATCCAGCATTTCTGTC  1472

Query 1479  CTCTGAAGCAGTGCTTCCTGACCTGACCGATGAACTTGCCCCTGTTTTTCTCCTTCGATGGTTCTACTCTGCTT  1552
            .||.|||||.|||||.|||||||||||.||.||.||.||.|||||.|||.||||.||.|||.|||||||||.||
Sbjct 1473  TTCAGAAGCTGTGCTCCCTGACCTGACTGACGAGCTGGCTCCTGTATTTTTCCTCCGGTGGCTCTACTCTGTTT  1546

Query 1553  CTGACTACATCTCAGACTGCTGGGATAGCATTTTTCACAACAACTGGAGGGAAATGATGCCCCTGCTGTCCCTG  1626
            ||||||||.||||.||||.||||||.|||.|..||||||..||||||.||||.||||||||||||||||||||.
Sbjct 1547  CTGACTACCTCTCGGACTTCTGGGAGAGCCTGCTTCACAGTAACTGGCGGGAGATGATGCCCCTGCTGTCCCTC  1620

Query 1627  ATCTTCTCTGCCCTCTTCATCCTCTTCGGCACTGTCATCGTTCAGGCTTTCAGCGACTCTAATGATGAGCGAGA  1700
            ||||||||.|||||||||||||||||||||||.|||||.||.|||||||||||.|||||.|||||.||||||||
Sbjct 1621  ATCTTCTCGGCCCTCTTCATCCTCTTCGGCACGGTCATGGTCCAGGCTTTCAGTGACTCAAATGAGGAGCGAGA  1694

Query 1701  GTCAAGCCCTCCAGAAAAAGAGGAAGCCCAAGAGAAGACTGGGAAAACTGAGCCAAGCTTCACCAAAGAAAACA  1774
            |||...||||.||||.||||||||||.||..||||||.|||||||.||||||||.||||||||||||||.|.||
Sbjct 1695  GTCGCACCCTGCAGACAAAGAGGAAGTCCCCGAGAAGGCTGGGAAGACTGAGCCGAGCTTCACCAAAGAGAGCA  1768

Query 1775  GCAGCAAGATTCCTAAAAAAGGCTTTGTGGAGGTAACTGAACTCACAGATGTAACATACACCAGTAACTTGGTA  1848
            ||||||||||||||||.|||||||||||||||||.|||||||||||||||||.||.||||||||.||.||||||
Sbjct 1769  GCAGCAAGATTCCTAAGAAAGGCTTTGTGGAGGTGACTGAACTCACAGATGTGACGTACACCAGCAATTTGGTA  1842

Query 1849  CGTCTGAGGCCAGGCCACATGAATGTGGTCCTCATCCTGTCGAATTCTACCAAGACCAGCCTACTACAGAAATT  1922
            ||.||||||||.||.|||||||||||||||||.||||||||.|||||.||.|||||.|||||.||.|||||.||
Sbjct 1843  CGCCTGAGGCCTGGTCACATGAATGTGGTCCTGATCCTGTCCAATTCCACTAAGACAAGCCTCCTGCAGAAGTT  1916

Query 1923  TGCTTTGGAGGTCTACACATTTACTGGGAGCAGCTGCCTACACTTCTCCTTCCTGAGTCTAGATAAACACAGAG  1996
            |||||||||.|||||||||||.||.|||||||||.||||.||||||||||||||||..||.||.||||||.|.|
Sbjct 1917  TGCTTTGGAAGTCTACACATTCACCGGGAGCAGCAGCCTCCACTTCTCCTTCCTGACACTGGACAAACACCGGG  1990

Query 1997  AATGGCTAGAATACTTACTAGAATTTGCTCAAGATGCAGCTCCAATCCCAAACCAATATGATAAGCATTTCATG  2070
            |.|||||.||.||.||.|||||.||||||||.|||||.||.||.|||||||||||.|||||.|||||.||.|||
Sbjct 1991  AGTGGCTGGAGTATTTGCTAGAGTTTGCTCAGGATGCGGCCCCGATCCCAAACCAGTATGACAAGCACTTTATG  2064

Query 2071  GAGCGTGACTACACTGGTTATGTACTGGCTCTGAATGGCCACAAGAAATACTTCTGCCTCTTCAAGCCCCAAAA  2144
            ||.||.|||||||||||.||.||.|||||.|||||.||.||||||||.||.||||||||.||||||||.|.|||
Sbjct 2065  GAACGAGACTACACTGGCTACGTGCTGGCCCTGAACGGTCACAAGAAGTATTTCTGCCTTTTCAAGCCACTAAA  2138

Query 2145  GACAGTCGAAGAGGAGGAAGCCATAGGGTCGTGCAGTGATGTTGACTCTTCCCTCTACCTGGGTGAATCTCGAG  2218
            ||||||.||.||||||      |..|.|.|.|.|.||||...||||||.|||                  ||||
Sbjct 2139  GACAGTGGATGAGGAG------ACTGTGGCCTCCTGTGACCCTGACTCCTCC------------------CGAG  2188

Query 2219  GGAAACCTTCCTGTGGCCTTGGATCCAGGCCCATCAAAGGAAAGTTGAGCAAGCTCTCTTTATGGATGGAACGC  2292
            ||||.|||||||||||||||||..|||.||||.|||||||.|||.||||||||.|.||.||.||||||||.|||
Sbjct 2189  GGAAGCCTTCCTGTGGCCTTGGCCCCAAGCCCCTCAAAGGCAAGCTGAGCAAGTTGTCCTTGTGGATGGAGCGC  2262

Query 2293  CTGCTGGAGGGCTCCTTACAGAGGTTTTATATCCCATCATGGCCTGAACTAGAC  2346
            ||||||||.||||||||.||||||||.||.|||||.||.||||||||.||.|||
Sbjct 2263  CTGCTGGAAGGCTCCTTGCAGAGGTTCTACATCCCGTCGTGGCCTGAGCTGGAC  2316

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