Nucleotide Global Alignment

Description

Query:
ccsbBroad304_03390
Subject:
NR_045672.1
Aligned Length:
5508
Identities:
523
Gaps:
4933

Alignment

Query    1  ATGACAGACTCGGCGACAGCTAACGGGGACGACAGGGACCCCGAGATCGAGCTCTTTGTGAAGGCTGGAATCGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGGAGAAAGCATCGGCAACTGTCCTTTCTCTCAGCGCCTCTTCATGATC-----CTCT------GGCTG--AAA  135
                           ||| .|||.||.|.|||          |||||.|     .|||      .||||  |||
Sbjct    1  ---------------CAA-AGTCATTGCCCTC----------CATGAACTAACAATCTACAGGGAGCTGTAAAA  48

Query  136  GGAGT-CGTGTTCAATGTCACCACTGTGGATCTGAAAAGAAAGCCAGCTGAC------CTGCACAACCTAGCCC  202
            ..||| |.|||.|||| || ||....|||.|.|     |||..|||||  ||      |||||||||.|     
Sbjct   49  CAAGTACATGTGCAAT-TC-CCGGCCTGGGTTT-----GAATCCCAGC--ACTTCTAGCTGCACAACTT-----  108

Query  203  CCGGCACGCACCC-----GC----CCTTCCTGACCTTC---------------AACGGGGACGTGA-AGACAG-  250
                    .||||     ||    .|||.||||.|.||               ||...||||.|.| |..||| 
Sbjct  109  --------TACCCAAGAGGCTTATTCTTTCTGAGCCTCTGGCTCTGCATCTGTAAAATGGACTTTACATTCAGT  174

Query  251  --------ACGTCAATAAGAT-------------CGAGGAGTTCCTGG-----------AGGAGAC------CT  286
                    ..|.|||||||.|             .|.||||   ||||           |||.|||      ||
Sbjct  175  TTCTTTATCTGGCAATAAGGTATTCTGCAGTGTGTGGGGAG---CTGGCAGTGTGATGAAGGGGACAGGATTCT  245

Query  287  TGACCCCTGAAAAG-TACCCCAAACTGGCTGCAAAACACCGGGA----ATCCAACACAGCGGGCA------TCG  349
            .||    ||   || |||.|||..|||     ||.||.|...||    |||||      |.||||      |.|
Sbjct  246  AGA----TG---AGCTACTCCACTCTG-----AAGACCCTATGACTGTATCCA------CTGGCAAGAAGTTTG  301

Query  350  ACAT-------CTTTTCCAAGT-TTTCTGCCTACATCAAAAATACCAAGCAGCAGAACAATGCTGCTCTTGAAA  415
            | ||       |||||   |.| ||||              ||.|||                 ||||||||||
Sbjct  302  A-ATAAAGGCCCTTTT---ACTCTTTC--------------ATGCCA-----------------GCTCTTGAAA  340

Query  416  GAGGCCTAACCAAGGCTCTAAAGAAATTGGATGACTACCTGAACACCCCTCTACCAGAGGAGATTGACGCCAAC  489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  341  GAGGCCTAACCAAGGCTCTAAAGAAATTGGATGACTACCTGAACACCCCTCTACCAGAGGAGATTGACGCCAAC  414

Query  490  ACTTGTGGGGAAGACAAGGGGTCCCGGCGCAAGTTCCTGGATGGGGATGAGCTGACCCTGGCTGACTGCAATCT  563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  ACTTGTGGGGAAGACAAGGGGTCCCGGCGCAAGTTCCTGGATGGGGATGAGCTGACCCTGGCTGACTGCAATCT  488

Query  564  GTTGCCCAAGCTCCATGTGGTCAAGATTGTGGCCAAGAAATACCGCAACTATGATATCCCGGCTGAGATGACAG  637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  489  GTTGCCCAAGCTCCATGTGGTCAAGATTGTGGCCAAGAAATACCGCAACTATGATATCCCGGCTGAGATGACAG  562

Query  638  GCCTGTGGCGGTACCTCAAGAACGCCTATGCCCGTGATGAGTTCACCAACACCTGTGCAGCTGACAGTGAGATC  711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  563  GCCTGTGGCGGTACCTCAAGAACGCCTATGCCCGTGATGAGTTCACCAACACCTGTGCAGCTGACAGTGAGATC  636

Query  712  GAGTTGGCCTACGCTGATGTCGCCAAACGCCTCAGCCGATCC--------------------------------  753
            ||||||||||||||||||||||||||||||||||||||||||                                
Sbjct  637  GAGTTGGCCTACGCTGATGTCGCCAAACGCCTCAGCCGATCCTGAGCACAGCCATTTTGCCCCATCCCCGCTGC  710

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct  711  AGAAGGACTCAACCACTCCCCTAAGACTCCAGCTTCATAGACTCCTCTGTATCACTGCCTTGAGGCGCACTTTT  784

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct  785  TATAATCAAGCCTCATCTTGCTGGTATCATGGGAACTCCAGCCTGCTATCTTTCATGAAGGTCAGCACCATCCC  858

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct  859  TGGCCTCCTCACATAGGAATCTAGCAGAAATGATAGACACAGTCCACCTTTCGGCCGGCCAGCCTGATCTGGGC  932

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct  933  TCAGCATGTTTGGGGTCAGTCAGTGTTGGAGAGCCCACATATGGGATTGCCACTAGCTTCTTCTGCCAATATCA  1006

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1007  AAATACCTTCTCAGATGCTTTAGAAACATGCAACACCAACTCCTTTTCTACCCTCCTCTCCGTCCATACCTACA  1080

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1081  AGGCCAAGGACAAACGCCATCTTCATCCTTCTTAGAAAGAGATCTATTACCCCATTAGGGGAGACAGAGAGAGT  1154

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1155  GAATGGAGGAGTACCGAGCTGGCTATGGACTTGGGTGTCTGGCAAACACAGCTTCAGTCTCACTACTTCTGACA  1228

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1229  CTCTGGTTATTGGGCACTAAGGGCCAGACTGGAAAGTCACTTGAGACACATTCTCAGTTTGTTGCAGTGCCAGG  1302

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1303  AATGCTGCGCTGCTGCTGCTGCGCACCTGGCCCATGCTGTCCCTGGCTTCCATGCCGTCCAGGCCCTGCCAGAA  1376

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1377  AAGGAAATTGGCATGCAATTCTAAACTGCAGTGACTGGGATGGGAGGGGAGGGGAGCAGTGTTGATGCCAAAAT  1450

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1451  ACCCACGGGGTCTACCAGCCATGGGGTTTGCTTGCTTAGGAGTAGTTGTTTCAGAGGTGATTACAGGCCTGGGT  1524

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1525  TTGACTGTGCTTACCAATGAGTGGTTTTTGAGCTATGAGAAAGTGGATGGGAGTGGGAGGAGGAGAGATGGGTG  1598

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1599  AAGACAAAAGAGTTCTTTATGAGCCTCGATGTTCCCTGGTAAACTTTTAAAAAGGCCTTCTCTCATGATCTAAG  1672

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1673  TCTTGGACTGGTGGCATCATGTAACTGCTAACCTTACAGTAAAAACCCAAGAATGGGTCAAAAATGTCTTCCCA  1746

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1747  GTTTCTCCAAGCTGCTTCTGGAATGCAGGTCTGTCGGCTGGGTGCTCTCCAGCAGCTGCTCCTGCCTGATTCAA  1820

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1821  CTGTAGCCTGTAATGGGTAAAAGCCACATTTAGGAGGTGGTCTGATCATAGAACACCTTAGGAAGAAAGTCCAT  1894

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1895  GAGACTTTCTGACTAGGAAACCATGTGGTTTGAACTTGAAGAAAAATGTAGACCCATCTGGGTTAATTTTCCTA  1968

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 1969  CAATCTGACTCAACTGCCAGGTGAAAAAAAAAAGGAAAAATTTTTAAGCTAATATTTCACTCTTTTGTCATTCT  2042

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2043  CCTTAAGTTTCATCTCCTAAAAAGCTTACCCAGCCTGAGCTTGGGGACCTGTGCAGAGGAAACTAAGAAAAATG  2116

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2117  CACTCATCAACTCCTTCTCCCAGTGAACGCCCGGTGAGAAAATCCATTTGCCACAGGCCCTTACCTTCAACAAT  2190

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2191  CCCCCTTCTATAGTGTTCGCTGGTAAAGGGTGAGGCTCCCAAGTGCTGGAAAGCCCCTGGACTTGGCTCATTTC  2264

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2265  TCAGCAAGGGCAGGATAGCACGGGTCCTTTCCATAGAAATATCAACAAATTCTAACCCAAGCAATCCCTGGACC  2338

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2339  TACCTGCCTCCAGGGATCTCTGAAGAAAAAAAGTAACCCATTGATCAAATCAGAGGAGAGGAAGCAGGAGGTCT  2412

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2413  CCTAGAGCCCATTGAGGAAGAGGAACTTTCTCAGTAGGACACTTTATAAGCCTGAGAAAGCTTTGAAAAGGCGG  2486

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2487  AATGAGTTGATTCATTTCCACCTCAAAAGGAACCTTTCCAGGTCCCCCTGGAAATTGTGCCCTGGAGATGTTTA  2560

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2561  ACAAGGAGAACTGGTGAGGAAAGAGTCCTTTTTTACTGTAGGGAAAAGCCCCAAACTGGCCTCCTGGGGGATGA  2634

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2635  GGGCTGAAATGATCCCGAAGGCCTTTTAATTAGTGTGAAATCCTGCTGTACTCAGAAATCCTTCCCCGAATTTA  2708

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2709  CAGCACAGGCAGGATGACCTAAGAGGCAGTTTACTTCCCTGAGACCCACAGTTGGGCTGTTCTGGAAACACATC  2782

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2783  TGTGAATCATAGCCAATTGCCACAGAGAAAACAGAACCAAGCCTCCGGTGAGGCCACTCCACCCCAGAGAAGTC  2856

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2857  TGCAGAATTCCAAGGACTCGGATTGGATGTTCAGAATTCAGCAACTGGAAAGTCCTTAAAAACAAACAGGCCAA  2930

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2931  ACCAAATCAATATTGCTGTTTCTAGATGTCCCTTCTGTGGTTGAGCTAGTTTTACAGAGATAAATATATTAAGA  3004

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3005  CAAGGAGGTGGGGGTGTTATATGATCAATGATAGCCATTTGAAAGAGAGGGAGGAGTACAGAAGGAAGGCACTT  3078

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3079  CTGGGTACTTAATTCAGAAATTTCTTTATATTTCAGCACTGGATTATCATATAATGCAAGTGACTATGGACTAA  3152

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3153  GAGTTAGTTATGGTGTCTTATGACTAGATTTATTATGGTATATTAAAGTAACAATAATATTAATATTACCTTCC  3226

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3227  TTTTTTTTTTTGTTTCAAAAGAGATCTTTCTCCAGATGCTTCAGCCTGTCTGGCCTTCTTATCATATGTGCAGC  3300

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3301  ACATCATGTCTCAGCAACAGTGTGGTGAGGTCCTTAGGTGTCCCAAGAACAACTCAGGGAGCACGGGAGGGTCT  3374

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3375  GCAGTTGGGACCCCACAACTATACAGCTATAGGGTAGGAGGCTTCCTTTTCATTGGTCCTGAATGAATACAAAT  3448

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3449  CGCTCAGAAAGCATTTTGGTGGCACAGAAAGGGGATGTATTTGTGTTGAGATCTTATTTTATTTTGTATTTATT  3522

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3523  TATCTTCTTTGACTTGCACAGCACTATTGGGGGTGGGGGAAGCAGGGTAGTGGGAGACGAAGGCAGAAGCAAGA  3596

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3597  GTCAAACTCAGAATGACTGAGTTGAATTCACTGTCTAGTCAGCAATGCCTGCTTCTGAGTTTGGCCCAGAGAGA  3670

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3671  AGGTATTGAGTAAGATTTTAATAACTGTAAAAAGTAAGCTGGATAAGTAAAATCATGATGGATCCAAAGCACAG  3744

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3745  TTTCTTCATCTCCTGATAAAGAAAGTCAAATGCTTGATAAATTCAGAGTCACAGATGTGAGCATAGCTATATTC  3818

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3819  TTTTAAACGAGAGGTAGAGTGACCTAGCACTAAGCAAATGAGCTGAAATGTCGGAAACAGAGTCCATCAGCTTA  3892

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3893  TTTGGCCACACGATCCCAAACTAGTTTTATCTTGGGAAATGGCCCTGTCCTCAGCATTCCCTTCTTGTGCTGGT  3966

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3967  GGGGCCAGTGAAGTCTTGATCTTATCAGAAAAAGGCCACACCAAGTGCGAGTTTTCCCAGGCTGACTTTCCAGG  4040

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4041  CCCTTATCAAATGAAACAACAGAAGCTCTTCACAGTTCTGTGCCCCATGGCCACTCCACAGACAGACAATACCA  4114

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4115  AGCATCTTAGAACTGTCATAAGATAGGTCATGCCTGAAATAGATCTTGACCATATGAGAGTCCCAGAAATCAGC  4188

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4189  AAGGCCTGGACAAATAGAACTAAGAGAGAGGCAGAGGCAGGAAGCTGCGGGTCTATCTTGTAAAGAGTTTAGCA  4262

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4263  TCACTGTGAGAGTGTGTGTCTAAAATTAAATTAAACTAGAAGCAGCAGGTGAGTATTTGGTAAGTACTTCTGTG  4336

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4337  ACTCGCCTCAATTCCCACTGGCCAGGGGCCATCTCAACTGCACGGTGAATCAAGATGCTGGTGTCATCCTCCTT  4410

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4411  GGAAAAAGGAAATGTTAACTCATGGTTAAAACTAAGTACAATGATTCCCAAGGGATCACTTTCTTATTTTTTTA  4484

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4485  AATGACATTAAGGAGAATCTTAAGAAAGCATCAGAGAAAGACATGTGCATGTGAAGCACCCTGATTCTGATGTT  4558

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4559  AGGAAAACTTAAGCGAACAGGACCTGCTGCACACAGCCCCATTGTCTTCTATCCATTTCTCTTTATCATTCAAA  4632

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4633  TCAAGCAACATGTGCCCTCCTCATCAACACACATTCTTCCCCTTTGTCAGTATGCATCTCCCAGCTTAGTGTCA  4706

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4707  GGATACTTTCGATTCATAATTATGTATGATCCAAAGTGTGCATAATTTCATTTAACGTTAAAGAAATAGATCCA  4780

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4781  ATTCCTTTCTTGCAACCAAAAATAAATAAAATACGTTGCCTCAATATAAGGTTTGGGCTATTCTGTGTTTCTAT  4854

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4855  AGAAGCAATCTGTTTTTGGTAAAATGTACTTTTAAGGATCCAGTCATCTGAAGTATTTTATGTAGAGTTAGAGA  4928

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4929  TTTCACAATATTGACTATACATATATTTAAAATATAAATTATCCAGCTGATGTTTGAATTTGTCTTACTTTCCT  5002

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 5003  GGCCACCTCGTTGTCCTATTTTATAAGCTGGGGAGTTAACTAGCTTAACAAAAGATGCTTAGCTTTTGTAAAAG  5076

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 5077  AACAAGTGTTTCATTTTACAAAGACACTCCAAATGATAGTTACTTGATTTTCTCGAGACCTTTAACTATGGTGA  5150

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 5151  TGAATAACAGGACTTGCTTTCAAGCCTTAATAAATGTAAAATGCCTTTTAATGAAGATACAGCTGAGTGTTTTC  5224

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 5225  CTCATGAATCTGAACCAATTACCAATTTGTGTTCCAGTCTTGATTGGTATTGACTGATTCAAATAAAGTTGGTT  5298

Query  754  --------------------------------  753
                                            
Sbjct 5299  TATTTTCAAATATTACAAAAAAAAAAAAAAAA  5330

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