Nucleotide Global Alignment

Description

Query:
ccsbBroad304_03405
Subject:
NR_040712.2
Aligned Length:
2312
Identities:
261
Gaps:
2045

Alignment

Query    1  ATGGCGGACGTGGTCGTGGGTAAAGACAAGGGCGGGGAGCAGCGGCTCATCTCGCTGCCTCTATCCCGCATCCG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGTCATCATGAAGAGCTCCCCCGAGGTGTCCAGCATCAACCAGGAGGCGTTGGTGCTCACG---------GCCA  139
                                                            |||..| |||.||         |.||
Sbjct    1  ------------------------------------------------GTTTCT-CTCGCGCTTCCATTCGGCA  25

Query  140  AGGCCACGGAGCTCTTTGTTCAATGCCTAGCCACCTATTCCTACAGACACGGCAGTGGAAAGGAAAAGAAAGTA  213
            |..||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   26  AACCC---GAGCTCTTTGTTCAATGCCTAGCCACCTATTCCTACAGACACGGCAGTGGAAAGGAAAAGAAAGTA  96

Query  214  CTGACTTACAGTGATTTAGCAAACACTGCACAGCAATCAGAAACTTTTCAGTTTCTTGCAGATATATTACCAAA  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   97  CTGACTTACAGTGATTTAGCAAACACTGCACAGCAATCAGAAACTTTTCAGTTTCTTGCAGATATATTACCAAA  170

Query  288  GAAGATTTTAGCTAGTAAATACCTGAAAATGCTTAAAGAGGAAAAGAGGGAAGAAGATGAGGAGAATGACAATG  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  171  GAAGATTTTAGCTAGTAAATACCTGAAAATGCTTAAAGAGGAAAAGAGGGAAGAAGATGAGGAGAATGACAATG  244

Query  362  ATAATGAAAGTGACCATGATGAAGCTGACTCC------------------------------------------  393
            ||||||||||||||||||||||||||||||||                                          
Sbjct  245  ATAATGAAAGTGACCATGATGAAGCTGACTCCTAAACCAAAAGTGCTTTAAAAACCAGCCTGGCGAGGACAGCC  318

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct  319  CTGGACCCACTCCACTGTCTCTAAGTAAACACAGCACTGCCCGCTTTTAGCGTCTTCACTTCTTCACAGAGTTC  392

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct  393  CAGTGTGTGGTATTCTTTCGAGGTATTCTTTCCAGGCCGAGATTGAGCACCTCATGTACCTACGCCACAGACAG  466

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct  467  CCAGAGGGAAAGCGACCCAGACAGCAGCCCCTCCTCGACAGGCCCACCCTGCAGCTCAGGCACCAAGAAAACAG  540

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct  541  CCGATACTGGCAGCCATTGCAGCTCCAAACTGCAGAGGCAAGGCCAATTTTAACTTTTCAATTTACAGTCGATT  614

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct  615  TTGAAGAGCTTCTACATATCGGTTATGTAAATTCATATATGTATATTTTGGAATCAGTTCTTATAAACAGCTCG  688

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct  689  ATTCAGTTTTAGCTAAATTTATAGTTTAGGTAGTATGTTACATTTGAATTTTTGTCTTAAGAAAAGTTGACTGT  762

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct  763  TCAGATATTTTTCTACTGTAAAGAAATATACTTTTCTATTAAAGATCTGTACATATTTTTACAGTAAAATGCTT  836

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct  837  TATGGAACTAGTTTTAGAGCCCTCTATGGCTTTAAGGCCTTGCTTACTGCCTGCAAATTTTGAGAAATTTAAAA  910

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct  911  ATAAGCATTCTAACACTTTTATTCCCACAGAAAAATTCCAAGTCAAATTATCAAATCAAATACAAAAATAAGTC  984

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct  985  TTACCTCTTGTATAAGCATGTTGTACTAAAAAAAAATTTTGAAACATTTTGTATATTGGAGATCTCTCTCATCT  1058

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1059  TACTGTTCTTTGCTTTAAATTCCTGGCACTTCTTTTTACTGTCTATAAGAGAAAACCTATCATAAGCCCAATTT  1132

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1133  TTTTTTTCCACTTAGGGTAAATGTTTGGCTCCTCTCATTTCATTATCTTTTTTTTTTTTTTTTTAAAGACAGAT  1206

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1207  TCTCACTCAGTTGCCCAGGCTGGATTGCGGTGGCGCTGTCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAA  1280

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1281  GTGATTCTCCTGCCTCATCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACCATGCCCAACCTATTTTTGTA  1354

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1355  TTTTTTAGTAGAGACGGGGTTCACCATGTTGGCCAGGCTTGTCTCAAACTCCTAACCTCAACTGATCCACCTGC  1428

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1429  CTCAGCCTCCCAAAGTGCCGCCGGGATTACAGGCGTGAGCCACCATGCCTGGCCTTCATTATCTCTTTTTTAAA  1502

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1503  AATGAAAAAGTTTATAATTTACATTCAGTAAAATCACCCTTTTTAGTGTCTAGTCTGTGAATTTTGACAAATGC  1576

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1577  ATGGTTTTGTAACCAATCGATAGGACAGTTCTGCCACCCAGGACATTCCCCTCTGTTCCTCTGTTCCTCTCTTC  1650

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1651  TCCTGCCCCCTAGCAACCACTGGTGTTTTCTGTCCCTCTTGTTCATTGACATTTATTTTAAAATAAAATATTTT  1724

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1725  AAAATCTACTTTTTGGTGTACAGTTCTGAGTTTTGGCAAATGCAGTCAAGTCACTACCACCACCACAATTAACA  1798

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1799  GCTATATCACCCTCCAGTAAATTCCCTGTGGTCAGCTCCTTCCCCACCTTTTACCGTGGCAACCGTCAAGCTAT  1872

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1873  TCTCTGTCCCTATACCAGGTGTCATCAAATTTTTTTCTGGAAAGGGCCATGCAGTAAATAGTTCAAGCTTTGTG  1946

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 1947  GGCTTTTATAGTCTCTGTTGCTGCTGCTGAACTCAGCTGTTGTAGCACGAAAGCAGCCAGGTAATTACTAGATG  2020

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 2021  AAGGAATGCAGGTGGCTGTGTTTCAATAGAGCTTTATTTCTGCAAACTGAAACTTGAGTTTTGTGTAATTTTCA  2094

Query  394  --------------------------------------------------------------------------  393
                                                                                      
Sbjct 2095  TGTGTCATGAAATACTGTTTTCTCCAACCATTTAATAATGTAAATACTTGCTAGCTTATGTGCCATTAAAAAAT  2168

Query  394  ------------------  393
                              
Sbjct 2169  GACTTGATTTGGCTTACA  2186

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