Nucleotide Global Alignment

Description

Query:
ccsbBroad304_03699
Subject:
NM_003736.3
Aligned Length:
2839
Identities:
2066
Gaps:
455

Alignment

Query    1  ATGGGGAGCGGCGCCGGGGAGCTGGGCCGGGCTGAGAGGCTGCCAGTGCTCTTTCTCTTCCTGCTGTCTTTGTT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGGGAGCGGCGCCGGGGAGCTGGGCCGGGCTGAGAGGCTGCCAGTGCTCTTTCTCTTCCTGCTGTCTTTGTT  74

Query   75  CTGCCCGGCGCTCTGTGAGCAGATCCGCTACAGGATTCCCGAGGAAATGCCCAAGGGCTCCGTAGTGGGGAACC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CTGCCCGGCGCTCTGTGAGCAGATCCGCTACAGGATTCCCGAGGAAATGCCCAAGGGCTCCGTAGTGGGGAACC  148

Query  149  TCGCCACGGACCTGGGGTTCAGCGTCCAGGAGTTACCGACTCGAAAACTGCGCGTCAGTTCGGAGAAGCCTTAC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCGCCACGGACCTGGGGTTCAGCGTCCAGGAGTTACCGACTCGAAAACTGCGCGTCAGTTCGGAGAAGCCTTAC  222

Query  223  TTCACCGTGAGCGCAGAGAGCGGGGAGTTGCTTGTGAGCAGCAGGCTAGACAGGGAGGAGATATGCGGGAAGAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTCACCGTGAGCGCAGAGAGCGGGGAGTTGCTTGTGAGCAGCAGGCTAGACAGGGAGGAGATATGCGGGAAGAA  296

Query  297  GCCAGCTTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTATCACGTGAATGTGGAGATCG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCCAGCTTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTATCACGTGAATGTGGAGATCG  370

Query  371  AGGACATTAATGACCACACGCCAAAATTCACGCAAAATTCCTTTGAGCTGCAAATAAGTGAGTCTGCACAGCCT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGACATTAATGACCACACGCCAAAATTCACGCAAAATTCCTTTGAGCTGCAAATAAGTGAGTCTGCACAGCCT  444

Query  445  GGCACAAGATTTATACTAGAAGTAGCAGAAGATGCAGATATTGGCTTA--AACTCTCTGCAGAAGTATAAACTC  516
            ||||||.||||||||.|||.|...||..|.|||||.||||||||  ||  |||.|.||||||||.||..|||||
Sbjct  445  GGCACACGATTTATATTAGGATCTGCCCATGATGCGGATATTGG--TAGCAACACACTGCAGAATTACCAACTC  516

Query  517  TCTCTTAACCCAAG------TTTCTCATTAATAATTAAGGAGAAA-CAGGATGGTAGTAAATACCCGGAACTGG  583
                  |..||.||      |||||||.|.||||.|||.|||||| || |||||.|||||||||||.||..|||
Sbjct  517  ------AGTCCCAGTGATCATTTCTCACTGATAAATAAAGAGAAATCA-GATGGCAGTAAATACCCTGAGATGG  583

Query  584  CACTGGAGAAAACCTTAGACCGGGAACAACAGA---GTTACCATCGTTTAGTCCTGACTGCCTTGGACGGTGGA  654
            .|.||.|||.|.|.||.|||.|.|||.|.||||   ..|||||  .||.|.| .||||||||||||||..||||
Sbjct  584  TATTGAAGACACCTTTGGACAGAGAAAAGCAGAAATCCTACCA--CTTGACT-TTGACTGCCTTGGACTTTGGA  654

Query  655  CATCCACCCCTAAGCGGCAC--CACTGAGCT-CCGGATCCAGGTAACCGACGCCAATGATAATCCCCCGGTATT  725
            ..|||||||||||||.||||  |||  ||.| |..|.||.| ||.||.||.||||||||||||.|.||.||.||
Sbjct  655  GCTCCACCCCTAAGCAGCACTGCAC--AGATACACGTTCTA-GTGACTGATGCCAATGATAATGCTCCAGTGTT  725

Query  726  CAACCGAGACGTGTACAGAGTCAGCCTTCGGGAAAACGTGCCACCAGGCACCACTGTGTTGCAAGTGTCAGCCA  799
            ||..|.||||||.|||||.||.||||||...|||||||||...||.||.|||||.|||.|.||.|||.|.||||
Sbjct  726  CAGTCAAGACGTATACAGGGTGAGCCTTTCAGAAAACGTGTACCCGGGGACCACGGTGCTACAGGTGACTGCCA  799

Query  800  CTGACCAAGACGAGGGCATCAACTCAGAAATTACTTATTCCTT--------CTA--CAGA--ACCGGGCAAATC  861
            |.|||||.||.|||||..||||..|.||.|||||||..||.||        |||  ||||  |||   |||   
Sbjct  800  CGGACCAGGATGAGGGTGTCAATGCCGAGATTACTTTCTCTTTCAGTGAAGCTAGCCAGATCACC---CAA---  867

Query  862  TTTAGTCTGAATTCAAAGAGCGGAGAAATTACCACTCAAAAGAAACTGGATTTTGAAGAGACCAAGGAATATTC  935
            |||...|||||.||.||.|.|||.||||||||...|..|||.|.|.|.|||||||||||...|||.||||||||
Sbjct  868  TTTGACCTGAACTCTAACACCGGGGAAATTACTGTTTTAAATACATTAGATTTTGAAGAAGTCAAAGAATATTC  941

Query  936  AATGGTTGTAGAAGGGAGGGATGGTGGTGGACTGGTTGCACAATGTACAGTTGA-----AATTAATATTCAAGA  1004
            .||.|||.|.||||..|||||.|||||.|||.||.||||.|||||.|||||.||     ||.|.||     |||
Sbjct  942  CATAGTTTTGGAAGCAAGGGACGGTGGAGGAATGATTGCGCAATGCACAGTGGAGGTAGAAGTCAT-----AGA  1010

Query 1005  TGAAAATGACAATAGCCCAGAAGTTACATTCCATTCTCTACTTGAAATGATTCTGGAAAACGCGGTGCCTGGAA  1078
            ||||||||||||...|||||||||.|.||||||.|||||||...|..|.|||.||||..||||.|.||..||||
Sbjct 1011  TGAAAATGACAACGCCCCAGAAGTGATATTCCAGTCTCTACCCAACCTAATTATGGAGGACGCCGAGCTGGGAA  1084

Query 1079  CACTAATTGCTTTGATCAAAATACATGACCAAGATTCTGGGGAAAATGGGGAGGTTAATTGTCAATTACAAGGC  1152
            |||..|||||||||.|||||.|.|.||||.|.|||||..|..|.|||||.||.||.|.||||.||||..||||.
Sbjct 1085  CACATATTGCTTTGCTCAAAGTCCGTGACAAGGATTCCAGACACAATGGAGAAGTGACTTGTAAATTGGAAGGT  1158

Query 1153  GAAGTCCCTTTTAAGATTATCTCTTCATCCAAAAATTCGTATAAGTTGGTAACAGATGGAACC----CTAGACC  1222
            ||.||.||.|||||.||..|..||||.||.|.|||..|||||||.||.||.|||||||    |    |||||||
Sbjct 1159  GATGTTCCATTTAAAATATTAACTTCTTCAAGAAACACGTATAAATTAGTGACAGATG----CTGTTCTAGACC  1228

Query 1223  GAGAGCAAACCCCGGAGTACAATGTCACCATCACAGCCACAGACAGGGGCAAGCCGCCCCTCTCCTCCAGCATA  1296
            |.|||||.|..||.|||||||||.|.|||.|.||.||.|||||..||||||||||.||||||||||||||....
Sbjct 1229  GCGAGCAGAATCCAGAGTACAATATAACCGTTACGGCAACAGATCGGGGCAAGCCTCCCCTCTCCTCCAGTTCC  1302

Query 1297  AGCGTCATCCTACATATCAGAGACGTCAACGATAACGCTCCGGTTTTC-CACCAGGCGTCCTACTTAGTCAGTG  1369
            |||.|||.|||.||.||..|.||.||.||.||.||||||||||||||| || |||.|.|||||..|||||...|
Sbjct 1303  AGCATCACCCTGCACATTGGTGATGTAAATGACAACGCTCCGGTTTTCTCA-CAGTCTTCCTATATAGTCCACG  1375

Query 1370  TACCCGAAAACAACCCTCCTGGGGCCTCCATCGCGCAAGTCTGCGCCTCGGACCTGGACTTGGGGTTGAACGGC  1443
            |..||||.||||||||.|||||.|||||.||..|.||||||.|.||.||.||.|.||||||||||...||||||
Sbjct 1376  TGGCCGAGAACAACCCGCCTGGAGCCTCTATTTCACAAGTCAGGGCTTCTGATCCGGACTTGGGGCCCAACGGC  1449

Query 1444  CAAGTCTCCTACTCTATCATGGCCAGCGACCTAGAGCCTCTGGCACTGGCCTCTTACGTGTCCATGAGCGCGCA  1517
            ||||||||.||||..|||||||||||.|||||.||||..|.||..|||.|.||.|||||||||||.||||||.|
Sbjct 1450  CAAGTCTCTTACTGCATCATGGCCAGTGACCTGGAGCAGCGGGAGCTGTCATCCTACGTGTCCATAAGCGCGGA  1523

Query 1518  AAGTGGGGTGGTGTTCGCGCAGCGCGCCTTTGACTACGAGCAGCTGCGCACCTTCGAACTCACACTACAGGCCC  1591
            .||.||||||||||||||||||||||||||.|||.||||||||||||||.||||||||||||||||.|||||||
Sbjct 1524  GAGCGGGGTGGTGTTCGCGCAGCGCGCCTTCGACCACGAGCAGCTGCGCGCCTTCGAACTCACACTGCAGGCCC  1597

Query 1592  GCGACCAGGGCTCGCCTGCGCTCAGCGCAAACGTGAGCCTGCGCGTGTTGGTGGGCGACCGAAACGACAACGCA  1665
            ||||||||||||||||.|||||||||||.||||||||||||||||||||.||||.||||||.||||||||.||.
Sbjct 1598  GCGACCAGGGCTCGCCAGCGCTCAGCGCGAACGTGAGCCTGCGCGTGTTAGTGGACGACCGCAACGACAATGCG  1671

Query 1666  CCGCGGGTGCTGTACCCCGCGCTGGGTCCCGACGGCTCTGCGCTCTTCGATATGGTGCCGCGCGCTGCAGAGCC  1739
            ||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 1672  CCACGGGTGCTGTACCCCGCGCTGGGTCCCGACGGCTCTGCGCTCTTCGATATGGTGCCGCACGCTGCAGAGCC  1745

Query 1740  CGGCTACCTGGTGACCAAGGTAGTGGCCGTGGACGCAGACTCAGGACACAACGCCTGGCTGTCCTACCACGTGC  1813
            .||||||.|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746  TGGCTACTTGGTGACCAAGGTAGTGGCGGTGGACGCAGACTCAGGACACAACGCCTGGCTGTCCTACCACGTGC  1819

Query 1814  TGCAGGCTAGCGAGCCCGGGCTCTTCAGCCTGGGGCTGCGCACAGGAGAGGTGCGCACAGCGCGTGCCTTGGGC  1887
            |||||||||||||||||||||||||||||||||||||||||||.||.||.||||||||||||||||||||.|||
Sbjct 1820  TGCAGGCTAGCGAGCCCGGGCTCTTCAGCCTGGGGCTGCGCACGGGCGAAGTGCGCACAGCGCGTGCCTTAGGC  1893

Query 1888  GACAGGGACGCGGCCCGCCAGCGCCTGCTGGTTGCTGTGCGTGATGGTGGACAGCCGCCACTCTCCGCCACCGC  1961
            |||||||||||.|.||||||||||||.|||||.||.||||||||.|||||||||||.||||||||.|||||.||
Sbjct 1894  GACAGGGACGCCGTCCGCCAGCGCCTTCTGGTCGCCGTGCGTGACGGTGGACAGCCACCACTCTCGGCCACTGC  1967

Query 1962  CACGCTGCACTTGGTCTTTGCTGACAGCTTGCAGGAGGTGCTGCCGGATATCACTGACCGCCCTGTACCCTCTG  2035
            ||||.|||||.|||||||.||.|||||||||||||||||||||||||||||||||||||||||.|..|||||||
Sbjct 1968  CACGTTGCACCTGGTCTTCGCCGACAGCTTGCAGGAGGTGCTGCCGGATATCACTGACCGCCCCGACCCCTCTG  2041

Query 2036  ACCCCCAGGCTGAGCTGCAGTTTTACCTAGTGGTGGCCTTGGCCTTGATCTCAGTGCTCTTCCTCCTGGCCGTG  2109
            |||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||
Sbjct 2042  ACCTCCAGGCTGAGCTGCAGTTTTACCTAGTGGTGGCCTTGGCCTTGATCTCAGTGCTCTTCCTCGTGGCCATG  2115

Query 2110  ATTCTGGCCGTTGCCTTGCGCCTGCGACGCTCCTCCAGCCCTGCCGCCTGGAGCTGCTTCCAACCTGGTCTCTG  2183
            |||||||||.|||||||||||||||||||||||||||||||.|||.||||||||||||||||.|||||||||||
Sbjct 2116  ATTCTGGCCATTGCCTTGCGCCTGCGACGCTCCTCCAGCCCCGCCTCCTGGAGCTGCTTCCAGCCTGGTCTCTG  2189

Query 2184  TGTCAAGTCTGGACCTGTGGTTCCCCCCAACTACAGTCAGGGGACTTTGCCTTATTCCTACAACCTATGTGTTG  2257
            |||.||.||.|.|.|.||||||||||||||||||||..|||||||||||||||||||||||||.||||||||||
Sbjct 2190  TGTTAAATCCGAATCCGTGGTTCCCCCCAACTACAGCGAGGGGACTTTGCCTTATTCCTACAATCTATGTGTTG  2263

Query 2258  CACATACAGGAAAGACGGAGTTTAATTTCCTAAAATGTAGTGAGCAATTGAGTTCAGGACAAGACATACTTTGT  2331
            ||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.
Sbjct 2264  CACATACAGGAAAGACGGAGTTTAATTTCCTAAAATGTAGTGAGCAGTTGAGTTCAGGACAAGACATACTTTGC  2337

Query 2332  GGTGATTCATCTGGGGCCTTATTTCCACTTTGTAATTCCAGCGAGTCGACTTCCCATCCTGAGTTGGTGAGTTT  2405
            |||||||||||||||||||||||||||||||||||||||||.||.|.|||||||||||   ||           
Sbjct 2338  GGTGATTCATCTGGGGCCTTATTTCCACTTTGTAATTCCAGTGAATTGACTTCCCATC---AG-----------  2397

Query 2406  CATTTATGTCTATTCTTTTTCATTACCCACCCAA-----------TTTTCTGTATTTACA--------------  2454
                                ||...|||.|||||           .|||||.|     ||              
Sbjct 2398  --------------------CAAGCCCCGCCCAACACGGACTGGCGTTTCTCT-----CAGGCCCAGAGACCCG  2446

Query 2455  --------------------------------------------------------------------------  2454
                                                                                      
Sbjct 2447  GCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGCTGCAA  2520

Query 2455  --------------------------------------------------------------------------  2454
                                                                                      
Sbjct 2521  GCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGG  2594

Query 2455  --------------------------------------------------------------------------  2454
                                                                                      
Sbjct 2595  ATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAG  2668

Query 2455  --------------------------------------------------------------------------  2454
                                                                                      
Sbjct 2669  GCAGCAATGCCACACTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAG  2742

Query 2455  ---------------------------  2454
                                       
Sbjct 2743  AAGAAGTCGGGCAAGAAGGAGAAGAAG  2769

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.