Nucleotide Global Alignment

Description

• Query: ccsbBroad304_03844
• Subject: XM_011518886.3
• Aligned Length: 3146
• Identities: 1636
• Gaps: 1489

Alignment

Query    1  -----ATGGGCTCCAG----------------GATCAA------------------------GCAGAATCCAGA  29
                 |||.|||.|||                |.|.||                        ||||||||||||
Sbjct    1  ATGAGATGCGCTGCAGCAGCCTTGAGACATCTGCTGAATGAAACTAGAAAAGTTTGCTTATGGCAGAATCCAGA  74

Query   30  GACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAGA  103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAGA  148

Query  104  GGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTG  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTG  222

Query  178  GACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATT  251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATT  296

Query  252  CGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTAT  325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTAT  370

Query  326  TTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAA  399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAA  444

Query  400  ACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCATCTCAGCGTGCATTCTTATTTTACTGTGCC  473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCATCTCAGCGTGCATTCTTATTTTACTGTGCC  518

Query  474  TGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAATCTGACAGAATATTTTGTGGCTGTGGATGTTAACA  547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAATCTGACAGAATATTTTGTGGCTGTGGATGTTAACA  592

Query  548  ACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACTCTG  621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACTCTG  666

Query  622  ACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTACTGGCAGCACGTGTACATCCCCGTGCTGCC  695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTACTGGCAGCACGTGTACATCCCCGTGCTGCC  740

Query  696  GCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAGAAAG  769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAGAAAG  814

Query  770  TCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACACCAACACCCTGGAAACCCCCTTCGATGAC  843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACACCAACACCCTGGAAACCCCCTTCGATGAC  888

Query  844  CTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAGAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGA  917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAGAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGA  962

Query  918  TGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGC  991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGC  1036

Query  992  CGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTG  1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTG  1110

Query 1066  CAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATTGATGGTCGATTAGATCTTCTCAATTCCGGCGAAGG  1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATTGATGGTCGATTAGATCTTCTCAATTCCGGCGAAGG  1184

Query 1140  TTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGAGTACGCTGGCAGTGACAAACTGTACCATCAGTGGC  1213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGAGTACGCTGGCAGTGACAAACTGTACCATCAGTGGC  1258

Query 1214  TCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACT  1287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACT  1332

Query 1288  GTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAGGACAT  1361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAGGACAT  1406

Query 1362  TGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCTGCCAAAGACTGCACCGTCCCCACTGGTGGAGGCCA  1435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCTGCCAAAGACTGCACCGTCCCCACTGGTGGAGGCCA  1480

Query 1436  AGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAGTCCACTTTGGACAG---------------------  1488
            |||||||||||||||||||||||||||||||||||||||||||||||||||||                     
Sbjct 1481  AGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAGTCCACTTTGGACAGCTGCAGAGACTGCGTCCCACC  1554

Query 1489  ---------------------------------GTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAG  1529
                                             |||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CGACCGCCTCCCAAGATACAGCGCTCGAGGCCCGTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAG  1628

Query 1530  CAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAGCCCTGAGCAAAACACCATTGCAAC---ACCAGCTA  1600
            ||||||||||||||||||||||||||||||||||||||||||||||||    .||   |||.|   |.|.|  |
Sbjct 1629  CAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAGCCCTGAGCA----GCC---GCAGCCGTATCGG--A  1693

Query 1601  CACTC-------------------------------CACATCCTACAGAAAAGCATTACCCATTTTGCGG----  1639
            |||||                               ||.|...|.||||..||||        ..|||||    
Sbjct 1694  CACTCAGGGAGTCAGACAGCGCGGAAGGCGACGAGGCAGAGAGTCCAGAGCAGCA--------AGTGCGGAAGT  1759

Query 1640  -------------CCAAGTTCCC---GA-CGAGAGGCTG--------------------GACCTCTTCATC---  1673
                         ||.||.||||   || ||   |||||                    |||.||||||.|   
Sbjct 1760  CCACAGGCCCTGTCCCAGCTCCCCCTGACCG---GGCTGCCAGCATCGACCTTCTGGAAGACGTCTTCAGCAAC  1830

Query 1674  ----ACAT------------------------------------------------------------------  1677
                ||||                                                                  
Sbjct 1831  CTGGACATGGAGGCCGCACTGCAGCCACTGGGCCAGGCCAAGAGCTTAGAGGACCTTCGTGCCCCCAAAGACCT  1904

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1905  GAGGGAGCAGCCAGGGACCTTTGACTATCAGAGGCTGGATCTGGGCGGGAGTGAGAGGAGCCGCGGGGTGACAG  1978

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1979  TGGCCTTGAAGCTTACCCACCCGTACAACAAGCTCTGGAGCCTGGGCCAGGACGACATGGCCATCCCCAGCAAG  2052

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2053  CCCCCAGCTGCCTCCCCTGAGAAGCCCTCAGCCCTGCTCGGAAACTCCCTGGCCCTGCCTCGAAGGCCCCAGAA  2126

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2127  CCGGGACAGCATCCTGAACCCCAGTGACAAGGAGGAGGTGCCCACCCCTACTCTGGGCAGCATCACCATCCCCC  2200

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2201  GGCCCCAAGGCAGGAAGACCCCAGAGCTGGGCATCGTGCCTCCACCGCCCATTCCCCGCCCGGCCAAGCTCCAG  2274

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2275  GCTGCCGGCGCCGCACTTGGTGACGTCTCAGAGCGGCTGCAGACGGATCGGGACAGGCGAGCTGCCCTGAGTCC  2348

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2349  AGGGCTCCTGCCTGGTGTTGTCCCCCAAGGCCCCACTGAACTGCTCCAGCCGCTCAGCCCTGGCCCCGGGGCTG  2422

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2423  CAGGCACGAGCAGTGACGCCCTGCTCGCCCTCCTGGACCCGCTCAGCACAGCCTGGTCAGGCAGCACCCTCCCG  2496

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2497  TCACGCCCCGCCACCCCGAATGTAGCCACCCCATTCACCCCCCAATTCAGCTTCCCCCCTGCAGGGACACCCAC  2570

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2571  CCCATTCCCACAGCCACCACTCAACCCCTTTGTCCCATCCATGCCAGCAGCCCCACCCACCCTGCCCCTGGTCT  2644

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2645  CCACACCAGCCGGGCCTTTCGGGGCCCCTCCAGCTTCCCTGGGGCCGGCTTTTGCGTCCGGCCTCCTGCTGTCC  2718

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2719  AGTGCTGGCTTCTGTGCCCCTCACAGGTCTCAGCCCAACCTCTCCGCCCTCTCCATGCCCAACCTCTTTGGCCA  2792

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2793  GATGCCCATGGGCACCCACACGAGCCCCCTACAGCCGCTGGGTCCCCCAGCAGTTGCCCCGTCGAGGATCCGAA  2866

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2867  CGTTGCCCCTGGCCCGCTCAAGTGCCAGGGCTGCTGAGACCAAGCAGGGGCTGGCCCTGAGGCCTGGAGACCCC  2940

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2941  CCGCTTCTGCCTCCCAGGCCCCCTCAAGGCCTGGAGCCAACACTGCAGCCCTCTGCTCCTCAACAGGCCAGAGA  3014

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3015  CCCCTTTGAGGATTTGTTACAGAAAACCAAGCAAGACGTGAGCCCGAGTCCGGCCCTGGCCCCGGCCCCAGACT  3088

Query 1678  --------------------------------------  1677
                                                  
Sbjct 3089  CGGTGGAGCAGCTCAGGAAGCAGTGGGAGACCTTCGAG  3126