Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04128
Subject:
NR_045601.1
Aligned Length:
2825
Identities:
1545
Gaps:
1074

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGCCTTCGCCTCAATTGGTCCATTGGCACAGTATTTCAGTTTTTATTGCGCATGTCGAGGCGTTTTGTCCCTCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGGACACCGTTTTCCAGCCAAGCAATGTCTGCGCCTTCGCCGATTTCGTAGCGTGCCGAGTTCTATCCTTTCC  148

Query    1  ------------ATGGCTAGTCGAGGGGCTCGGCAGCGCCTGAAGGGCAGCGG-GGC--------CAGCAGTGG  53
                        |||||.||.|||.||||.|||||||||||.|||||..|||| |||        |.||.||||
Sbjct  149  CCGACGCTGGGCATGGCGAGCCGAAGGGCCCGGCAGCGCCTCAAGGGTGGCGGCGGCGGTGGCGGCGGCGGTGG  222

Query   54  GGATACGGCCCCGGCTGCGGACAAGCTGCGGGAGCTGCTGGGCAGCCGAGAGGCGGGCGGCGCGGAGCACCGGA  127
            ||||.|||.||||||.|||||.|||||   |||.|.|||.||||||||.|||||   .|||||.||||..|||.
Sbjct  223  GGATGCGGGCCCGGCGGCGGAGAAGCT---GGAACAGCTCGGCAGCCGGGAGGC---AGGCGCAGAGCCGCGGC  290

Query  128  CCGAGTTATCTGGGAACAAAGCAGGACAAGTCTGGGCACCTGAAGGATCTACTGCTTTCAAGTGTCTGCTTTCA  201
            |.|||   |||||.||.||||||||.|||||||||||.|||||||||||.||||||||||||||||||||.|||
Sbjct  291  CAGAG---TCTGGAAATAAAGCAGGGCAAGTCTGGGCCCCTGAAGGATCCACTGCTTTCAAGTGTCTGCTCTCA  361

Query  202  GCAAGGTTATGTGCTGCTCTCCTGAGCAACATCTCTGACTGTGATGAAACATTCAACTACTGGGAGCCAACACA  275
            ||.|||||.||.||.||.||.||||||||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct  362  GCGAGGTTGTGCGCAGCCCTTCTGAGCAACATCTCGGACTGTGATGAAACATTCAACTACTGGGAACCAACACA  435

Query  276  CTACCTCATCTATGGGGAAGGG-TTTCAGACTTGGGAATATTCCCCAGCATATGCCATTCGCTCCTATGCTTAC  348
            |||||||||||| .|||||||| ||.|||||.||||||||||||||.|..||||||||.|||||.|||||||||
Sbjct  436  CTACCTCATCTA-CGGGAAGGGATTCCAGACATGGGAATATTCCCCCGTGTATGCCATCCGCTCATATGCTTAC  508

Query  349  CTGTTGCTTCATGCCTGGCCAGCTGCATTTCATGCAAGAATTCTACAAACTAATAAGATTCTTGTGTTTTACTT  422
            |||.||||.||.||||||||||||||||||||||||.|.|||||.||.|||||.|||                 
Sbjct  509  CTGCTGCTGCACGCCTGGCCAGCTGCATTTCATGCACGGATTCTGCAGACTAACAAG-----------------  565

Query  423  TTTGCGATGTCTTCTGGCTTTTGTGAGCTGTATTTGTGAACTTTACTTTTACAAGGCTGTGTGCAAGAAGTTTG  496
                                                                  ||||||||||||||||||||
Sbjct  566  ------------------------------------------------------GGCTGTGTGCAAGAAGTTTG  585

Query  497  GGTTGCACGTGAGTCGAATGATGCTAGCCTTCTTGGTTCTCAGCACTGGCATGTTTTGCTCATCATCAGCATTC  570
            ||.||||.|||||||||||||||||.||||||.||||.||||||||.||||||||.|||||||||||.||||||
Sbjct  586  GGCTGCATGTGAGTCGAATGATGCTGGCCTTCCTGGTGCTCAGCACGGGCATGTTCTGCTCATCATCTGCATTC  659

Query  571  CTTCCTAGTAGCTTCTGTATGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACAAGACTTCCATTGC  644
            ||.||.||.||||||||.||||||||.|||.||||.||||||||.||||||||||||||||||||..|||||||
Sbjct  660  CTCCCCAGCAGCTTCTGCATGTACACCACGCTGATCGCCATGACGGGATGGTATATGGACAAGACACCCATTGC  733

Query  645  TGTGCTGGGAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTACCCATTGCCTTTG  718
            |||||||||||||||||||||.||.||||||||.|||||.||.|||||||||||||||||||||||.|||||.|
Sbjct  734  TGTGCTGGGAGTAGCAGCTGGTGCCATCTTAGGGTGGCCGTTTAGTGCAGCTCTTGGTTTACCCATCGCCTTCG  807

Query  719  ATTTGCTGGTCATGAAACACAGGTGGAAGAGTTTCTTTCAT-TGGTCGCTGATGGCCCTCATACTATTTCTGGT  791
            |.|||||||.||.|||.||||||||||||||||| |.||.| |||||.|||.|||||||....||.||..||||
Sbjct  808  ACTTGCTGGCCAGGAAGCACAGGTGGAAGAGTTT-TCTCCTCTGGTCCCTGGTGGCCCTGGCTCTCTTCTTGGT  880

Query  792  GCCTGTGGTGGTCATTGACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTGTTTTGTATAATG  865
            |||.||||||||||||||||||||||||||.||||||||||||.||||.||.||||||||||||||||||||.|
Sbjct  881  GCCCGTGGTGGTCATTGACAGCTACTATTACGGGAAGTTGGTGGTTGCCCCTCTCAACATTGTTTTGTATAACG  954

Query  866  TCTTTACTCCTCATGGACCTGATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAATGGATTTCTGAAT  939
            |||||||..|||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.
Sbjct  955  TCTTTACGTCTCATGGACCTGATCTTTATGGTACAGAACCATGGTATTTCTATTTAATCAATGGATTTCTGAAC  1028

Query  940  TTCAATGTAGCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCTGCTGCAGAGATT  1013
            ||||||||.|||||||||||||||||.||.||..|.||||||||||..||||||||.||||||||||||||.||
Sbjct 1029  TTCAATGTTGCCTTTGCTTTGGCTCTTCTGGTTTTGCCACTGACTTTCCTTATGGAGTACCTGCTGCAGAGGTT  1102

Query 1014  TCATGTTCAGAATTTAGGCCACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTATAATTTTCTTCA  1087
            .|||||||||||||||||.||||||||||||||.||||||||.|||||||||||||||||||||||||||||||
Sbjct 1103  CCATGTTCAGAATTTAGGACACCCGTATTGGCTGACCTTGGCGCCAATGTATATTTGGTTTATAATTTTCTTCA  1176

Query 1088  TCCAGCCTCACAAAGAGGAGAGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGCGCTGTGGCTCTC  1161
            ||||||||||.|||||.|||.|.|||||.|||||.||.|||||.||.|||||.||||||||.|||||.|||||.
Sbjct 1177  TCCAGCCTCATAAAGAAGAGCGCTTTCTCTTCCCAGTCTATCCGCTCATATGCCTCTGTGGTGCTGTTGCTCTT  1250

Query 1162  TCTGCACTTCAGCACAGTTTTCTGTACTTCCAGAAATGTTACCACTTTGTGTTTCAACGATATCGCCTGGAGCA  1235
            |||||||||                     ||||||||.|||||||||||||||||||||||.|||||||||||
Sbjct 1251  TCTGCACTT---------------------CAGAAATGCTACCACTTTGTGTTTCAACGATACCGCCTGGAGCA  1303

Query 1236  CTATACTGTGACATCGAATTGGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCATTTTCTCGCTCTG  1309
            .||.||.|||||.||.||.||||||||..|.||.||.||.||||||||||||||||||||.||.||.|||||||
Sbjct 1304  TTACACGGTGACGTCCAACTGGCTGGCGCTGGGCACAGTTTTCCTGTTTGGGCTCTTGTCGTTCTCCCGCTCTG  1377

Query 1310  TGGCACTGTTCAGAGGATATCACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCTACAGACCCAACC  1383
            ||||.||||||||||||||.|||||||||||||||||.|||||||||||||||.|||||||.||||||||||||
Sbjct 1378  TGGCTCTGTTCAGAGGATACCACGGGCCCCTTGATTTATATCCAGAATTTTACAGAATTGCCACAGACCCAACC  1451

Query 1384  ATCCACACTGTCCCAGAAGGCAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATTTCCCAGCAGCTT  1457
            |||||||||||||||||||||||.||.|||||.|||||||||||||||||||||||||||||||||||.|||||
Sbjct 1452  ATCCACACTGTCCCAGAAGGCAGGCCCGTGAACGTCTGTGTGGGAAAAGAGTGGTATCGATTTCCCAGTAGCTT  1525

Query 1458  CCTTCTTCCTGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAAAACCTTTTGCAG  1531
            ||||||.||||||||||||||||||||||||||||||||||||||||||||||||.|||||||.|||||.||||
Sbjct 1526  CCTTCTGCCTGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGCTACCAAAGCCTTTCGCAG  1599

Query 1532  AAGGACCTCTGGCCACCCGGATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCATCCAGATATATT  1605
            |.|||||.|||||||||.|||.||||||.|||.|||||||.||||||||.|.|||.|||||.||||||||.|||
Sbjct 1600  AGGGACCACTGGCCACCAGGACTGTTCCCACTCACATGAACGACCAGAACCGAGAGGAGCCTTCCAGATACATT  1673

Query 1606  GATATCAGTAAATGCCATTATTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCCAAAATATTCATC  1679
            ||.|||||.|||||||||||.||||||||||||||.|||||||||||||||||.|||||||||||.||.|||||
Sbjct 1674  GACATCAGCAAATGCCATTACTTAGTGGATTTGGATACCATGAGAGAAACACCTCGGGAGCCAAACTACTCATC  1747

Query 1680  CAATAAAGAAGAATGGATCAGCTTGGCCTATAGACCATTCCTTGATGCTTCTAGATCTTCAAAGCTGCTGCGGG  1753
            |.|.|.||||||.|||.|||||.||||..|.|||||||||||.|||||.|||||.|||||.|||.||||.||||
Sbjct 1748  CCACAGAGAAGAGTGGGTCAGCCTGGCTCACAGACCATTCCTGGATGCGTCTAGGTCTTCCAAGTTGCTTCGGG  1821

Query 1754  CATTCTATGTCCCCTTCCTGTCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAACCCCGGAAAGCA  1827
            ||||||||||.||||||||||||||||||||.||.|||||.||.||||||||||||||.||.||.|||||||||
Sbjct 1822  CATTCTATGTTCCCTTCCTGTCAGATCAGTACACGGTGTATGTGAACTACACCATCCTGAAGCCTCGGAAAGCA  1895

Query 1828  AAGCAAATCAGGAAGAAAAGTGGAGGT-----------------------------------------------  1854
            ||||..|.|||||||||||||||||||                                               
Sbjct 1896  AAGCCGAGCAGGAAGAAAAGTGGAGGTTAGCACCCCGGTGACTCCAGAGGACAGCCTGTGCTAACTAGGGCTTC  1969

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 1970  CACGGAGCCGACTTCCTCCAAGGCATCCTGTTAGAGCTGTAATAAAGGTCGTCCACCAAGAGTGCCAGAAGCTG  2043

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2044  GTGCTCTGAGCTCGTCATGGTCTATGTCAAAGTCTAATCAAAGTCACACACTTCCTGCTCCTGGGTCTGTTCTG  2117

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2118  CATGTGAGCTCTCTGCAGATAGGCACAGTCCTAACTCCTGGGGAAGTCCAGTGCTCCACTCCACCTTGTTCTCC  2191

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2192  ATGTAGGTACTCACTGGAGGGAGAAGAGTAGAACGTGCTTGCAGAAACTGCGAGAGGACCTAACTCGGTGTGGG  2265

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2266  CTAGCCTTCTCCACTCTCTGGCCAGCATCTGAGAACTACCAAGCCTCCCTTAGACTACAAGGTTTCTCTCTCAG  2339

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2340  AGCTGTTTGGCAACTTCTAGCAGGCCTTCTTCAAATCCTACTGCTGAAAAGCAGCTCAGCCTAGTTGCCAACCA  2413

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2414  GATATGGCCTTTTCCCGGCAGCAAGACGTGGCTTCTAAAGTGTTCCCAGGACTGACACTGTCCTGAAGCTCAGG  2487

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2488  AAAAAGGCGACCACTGAAGAACTGTGACCTAATCATATTATTTAATGATGCCTTTAACTTTCCTTTTATTTTCT  2561

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2562  TTAAAACTGGTCTTAATTATATGGCTTTTTGGGAAGTGTTTTAAGATTTTTTTAATGTTTCAGTCTGCTTTATT  2635

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2636  GAATTCTAGACTCTGTATATATAGGGCGTCTTTGGAGAAAAAGGTGTATCAATAGATTTGGGTGACAACACAAA  2709

Query 1855  -------------  1854
                         
Sbjct 2710  AAAAAAAAAAAAA  2722

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