Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04128
Subject:
XR_001747971.1
Aligned Length:
2815
Identities:
1823
Gaps:
970

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTGCCCCCGGGAGGGTCTTAGCTGTGGCGCGCGGGGCTCAGTCCGGCCTGGCCTCACCGCGGGAGGCCCGAGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCCTCTTCAGCTAGGTCCTATTGGTCTTCCTGGGCGGGTCAGCATTCAGTCTTCGCCCACCTTAGATCCCTCC  148

Query    1  --------------ATGGCTAGTCGAGGG------------GCTC----GGCAGCGCCTGAAGGGCAGCGGGGC  44
                          .||.||  |.|||.|            ||||    |.||| ||||  ||   ||.|||..
Sbjct  149  ACTGCGCTGTAAAACTGCCT--TGGAGTGCGGATCTGTGATGCTCCTGGGCCAG-GCCT--AG---AGTGGGCA  214

Query   45  CAG---CAGTGGG-GA----------------------------TACGGC------------------------  62
            |||   |.||||| ||                            ||||||                        
Sbjct  215  CAGCCTCTGTGGGAGATGTAGACAGGATCAAAGAGTATACCTTTTACGGCTGTTCCTCACAGCTCCTTTTATTC  288

Query   63  -CCC-------------------------------------------------------------GGCTGCGG-  73
             |||                                                             ||||||.| 
Sbjct  289  TCCCTCAAGTCCCGACCCTTTACTGGGCCCATCCAACCCGCCATCACCTCTTCCCAAACCCTGGAGGCTGCAGG  362

Query   74  --ACAAGCTGC-----GGGAGCTG-------CTGG-------GCAGCCGA-------------GAGGC------  107
              |.|| ||||     ||||||||       .|||       |.||.|.|             .||||      
Sbjct  363  TTAGAA-CTGCATTAAGGGAGCTGTCAACATATGGAATTGGAGTAGGCTATGTACCTTGCACCTAGGCTTCTAT  435

Query  108  ----------GGGCG----------GC--------GC----------------------------GGAG-----  120
                      |||.|          ||        ||                            ||||     
Sbjct  436  CTGAACATAAGGGGGAATGAATAAAGCCATCAAAAGCAATGACCTTGTTAAGAAAAGAAAGAAAAGGAGAATGA  509

Query  121  CACC-----GGAC--CGAGTTATCTGGGAACAAAGCAGGACAAGTCTGGGCACCTGAAGGATCTACTGCTTTCA  187
            ||.|     ||.|  |.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  510  CAGCTTTGTGGCCTTCAAGTTATCTGGGAACAAAGCAGGACAAGTCTGGGCACCTGAAGGATCTACTGCTTTCA  583

Query  188  AGTGTCTGCTTTCAGCAAGGTTATGTGCTGCTCTCCTGAGCAACATCTCTGACTGTGATGAAACATTCAACTAC  261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  584  AGTGTCTGCTTTCAGCAAGGTTATGTGCTGCTCTCCTGAGCAACATCTCTGACTGTGATGAAACATTCAACTAC  657

Query  262  TGGGAGCCAACACACTACCTCATCTATGGGGAAGGGTTTCAGACTTGGGAATATTCCCCAGCATATGCCATTCG  335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  658  TGGGAGCCAACACACTACCTCATCTATGGGGAAGGGTTTCAGACTTGGGAATATTCCCCAGCATATGCCATTCG  731

Query  336  CTCCTATGCTTACCTGTTGCTTCATGCCTGGCCAGCTGCATTTCATGCAAGAATTCTACAAACTAATAAGATTC  409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  732  CTCCTATGCTTACCTGTTGCTTCATGCCTGGCCAGCTGCATTTCATGCAAGAATTCTACAAACTAATAAGATTC  805

Query  410  TTGTGTTTTACTTTTTGCGATGTCTTCTGGCTTTTGTGAGCTGTATTTGTGAACTTTACTTTTACAAGGCTGTG  483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  806  TTGTGTTTTACTTTTTGCGATGTCTTCTGGCTTTTGTGAGCTGTATTTGTGAACTTTACTTTTACAAGGCTGTG  879

Query  484  TGCAAGAAGTTTGGGTTGCACGTGAGTCGAATGATGCTAGCCTTCTTGGTTCTCAGCACTGGCATGTTTTGCTC  557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  880  TGCAAGAAGTTTGGGTTGCACGTGAGTCGAATGATGCTAGCCTTCTTGGTTCTCAGCACTGGCATGTTTTGCTC  953

Query  558  ATCATCAGCATTCCTTCCTAGTAGCTTCTGTATGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACA  631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  954  ATCATCAGCATTCCTTCCTAGTAGCTTCTGTATGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACA  1027

Query  632  AGACTTCCATTGCTGTGCTGGGAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTA  705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028  AGACTTCCATTGCTGTGCTGGGAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTA  1101

Query  706  CCCATTGCCTTTGATTTGCTGGTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCAT  779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102  CCCATTGCCTTTGATTTGCTGGTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCAT  1175

Query  780  ACTATTTCTGGTGCCTGTGGTGGTCATTGACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTG  853
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176  ACTATTTCTGGTGCCTGTGGTGGTCATTGACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTG  1249

Query  854  TTTTGTATAATGTCTTTACTCCTCATGGACCTGATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAAT  927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250  TTTTGTATAATGTCTTTACTCCTCATGGACCTGATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAAT  1323

Query  928  GGATTTCTGAATTTCAATGTAGCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCT  1001
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324  GGATTTCTGAATTTCAATGTAGCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCT  1397

Query 1002  GCTGCAGAGATTTCATGTTCAGAATTTAGGCCACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTA  1075
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398  GCTGCAGAGATTTCATGTTCAGAATTTAGGCCACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTA  1471

Query 1076  TAATTTTCTTCATCCAGCCTCACAAAGAGGAGAGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGC  1149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472  TAATTTTCTTCATCCAGCCTCACAAAGAGGAGAGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGC  1545

Query 1150  GCTGTGGCTCTCTCTGCACTTCAGCACAGTTTTCTGTACTTCCAGAAATGTTACCACTTTGTGTTTCAACGATA  1223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546  GCTGTGGCTCTCTCTGCACTTCAGCACAGTTTTCTGTACTTCCAGAAATGTTACCACTTTGTGTTTCAACGATA  1619

Query 1224  TCGCCTGGAGCACTATACTGTGACATCGAATTGGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCAT  1297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620  TCGCCTGGAGCACTATACTGTGACATCGAATTGGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCAT  1693

Query 1298  TTTCTCGCTCTGTGGCACTGTTCAGAGGATATCACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCT  1371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694  TTTCTCGCTCTGTGGCACTGTTCAGAGGATATCACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCT  1767

Query 1372  ACAGACCCAACCATCCACACTGTCCCAGAAGGCAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATT  1445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768  ACAGACCCAACCATCCACACTGTCCCAGAAGGCAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATT  1841

Query 1446  TCCCAGCAGCTTCCTTCTTCCTGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAA  1519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842  TCCCAGCAGCTTCCTTCTTCCTGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAA  1915

Query 1520  AACCTTTTGCAGAAGGACCTCTGGCCACCCGGATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCA  1593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916  AACCTTTTGCAGAAGGACCTCTGGCCACCCGGATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCA  1989

Query 1594  TCCAGATATATTGATATCAGTAAATGCCATTATTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCC  1667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990  TCCAGATATATTGATATCAGTAAATGCCATTATTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCC  2063

Query 1668  AAAATATTCATCCAATAAAGAAGAATGGATCAGCTTGGCCTATAGACCATTCCTTGATGCTTCTAGATCTTCAA  1741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064  AAAATATTCATCCAATAAAGAAGAATGGATCAGCTTGGCCTATAGACCATTCCTTGATGCTTCTAGATCTTCAA  2137

Query 1742  AGCTGCTGCGGGCATTCTATGTCCCCTTCCTGTCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAA  1815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2138  AGCTGCTGCGGGCATTCTATGTCCCCTTCCTGTCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAA  2211

Query 1816  CCCCGGAAAGCAAAGCAAATCAGGAAGAAAAGTGGAGGT-----------------------------------  1854
            |||||||||||||||||||||||||||||||||||||..                                   
Sbjct 2212  CCCCGGAAAGCAAAGCAAATCAGGAAGAAAAGTGGAGACCGGAGAAGAGCAGAACCAACTTACAGGAAGAATTG  2285

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2286  AAAATCCTGGTACTGGATGGCTGTGATAAGCTGTTCTCCACACTCTGGCCTGGCATCTGAGAACTAGCAAGCCT  2359

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2360  CTCTTAGGCCATATGGGCTTCTCCACCAAAGCTGTTTGGCAGCTCCTAGCAGACCTTCTTATTGAAATCCTCAT  2433

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2434  GCTGAAAATGAACACAGCCTAGTTGCCAACCCACATGTCCTTTTCACCTCCAGCAAGACTAAGCTTCTTTAAAG  2507

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2508  CACTTCACAGGACTAGGACCCTGTCCTGGAGCTATCTCAGGAAAAAGGTGATCTAGCTAACAGGTAGCTAGAGT  2581

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2582  TGAACACCACTGCTCTGGATAAAGACTGAGAGACTAACAATCACACCAAAAAATCAAAGGTAATTAAACAGGCA  2655

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2656  ACATATTTGGTGTCCTTTTCTAATTGTGACTCCTGGTTACCCAGGCCTTCATCTAGGCCTCTTCCCCACCACAG  2729

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2730  ACCTATTTCTCTGTCTACTCCAGCCCATCAAACCTTACCTGCCCTCTCTCCCATTCCCTCTGGGCCCTGCTTTC  2803

Query 1855  ---  1854
               
Sbjct 2804  TGG  2806

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