Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04128
Subject:
XR_001747974.1
Aligned Length:
2635
Identities:
1815
Gaps:
790

Alignment

Query    1  ------ATGGCTAGTCGAGGGGCT-----CGGCAGCGCCTGAAGGGCAGCGG--GGCCAG-----------CAG  50
                  .||||   .||.||||||     ||||...||||.|    |.||||  ||||.|           |||
Sbjct    1  TTAGCTGTGGC---GCGCGGGGCTCAGTCCGGCCTGGCCTCA----CCGCGGGAGGCCCGAGCTCCCTCTTCAG  67

Query   51  --------------------TGGG------------------------------GATACGGCCCCGGCTGCGGA  74
                                ||||                              |||.|..||.|.|| ||.|.
Sbjct   68  CTAGGTCCTATTGGTCTTCCTGGGCGGGTCAGCATTCAGTCTTCGCCCACCTTAGATCCCTCCACTGC-GCTGT  140

Query   75  CAAGCTGC--GGGA---------------GCTGCTGGGC--AGCCGAGAGGCGGGCGGCGC-------GGAG--  120
            .||.||||  .|||               |||.||||||  .|||.||| |.||||...||       ||||  
Sbjct  141  AAAACTGCCTTGGAGTGCGGATCTGTGATGCTCCTGGGCCAGGCCTAGA-GTGGGCACAGCCTCTGTGGGAGAT  213

Query  121  ---CACCGGA----------------------------------------------------------CCGA--  131
               .||.|||                                                          ||||  
Sbjct  214  GTAGACAGGATCAAAGAGTATACCTTTTACGGCTGTTCCTCACAGCTCCTTTTATTCTCCCTCAAGTCCCGACC  287

Query  132  --------------------------------------------------------GTTATCTGGGAACAAAGC  149
                                                                    ||||||||||||||||||
Sbjct  288  CTTTACTGGGCCCATCCAACCCGCCATCACCTCTTCCCAAACCCTGGAGGCTGCAGGTTATCTGGGAACAAAGC  361

Query  150  AGGACAAGTCTGGGCACCTGAAGGATCTACTGCTTTCAAGTGTCTGCTTTCAGCAAGGTTATGTGCTGCTCTCC  223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  362  AGGACAAGTCTGGGCACCTGAAGGATCTACTGCTTTCAAGTGTCTGCTTTCAGCAAGGTTATGTGCTGCTCTCC  435

Query  224  TGAGCAACATCTCTGACTGTGATGAAACATTCAACTACTGGGAGCCA----ACACACTACCTCATCTATGGGGA  293
            |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||
Sbjct  436  TGAGCAACATCTCTGACTGTGATGAAACATTCAACTACTGGGAGCCAGTAGACACACTACCTCATCTATGGGGA  509

Query  294  AGGGTTTCAGACTTGGGAATATTCCCCAGCATATGCCATTCGCTCCTATGCTTACCTGTTGCTTCATGCCTGGC  367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  510  AGGGTTTCAGACTTGGGAATATTCCCCAGCATATGCCATTCGCTCCTATGCTTACCTGTTGCTTCATGCCTGGC  583

Query  368  CAGCTGCATTTCATGCAAGAATTCTACAAACTAATAAGATTCTTGTGTTTTACTTTTTGCGATGTCTTCTGGCT  441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  584  CAGCTGCATTTCATGCAAGAATTCTACAAACTAATAAGATTCTTGTGTTTTACTTTTTGCGATGTCTTCTGGCT  657

Query  442  TTTGTGAGCTGTATTTGTGAACTTTACTTTTACAAGGCTGTGTGCAAGAAGTTTGGGTTGCACGTGAGTCGAAT  515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  658  TTTGTGAGCTGTATTTGTGAACTTTACTTTTACAAGGCTGTGTGCAAGAAGTTTGGGTTGCACGTGAGTCGAAT  731

Query  516  GATGCTAGCCTTCTTGGTTCTCAGCACTGGCATGTTTTGCTCATCATCAGCATTCCTTCCTAGTAGCTTCTGTA  589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  732  GATGCTAGCCTTCTTGGTTCTCAGCACTGGCATGTTTTGCTCATCATCAGCATTCCTTCCTAGTAGCTTCTGTA  805

Query  590  TGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACAAGACTTCCATTGCTGTGCTGGGAGTAGCAGCT  663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  806  TGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACAAGACTTCCATTGCTGTGCTGGGAGTAGCAGCT  879

Query  664  GGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTACCCATTGCCTTTGATTTGCTGGTCATGAAACA  737
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  880  GGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTACCCATTGCCTTTGATTTGCTGGTCATGAAACA  953

Query  738  CAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCATACTATTTCTGGTGCCTGTGGTGGTCATTGACA  811
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  954  CAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCATACTATTTCTGGTGCCTGTGGTGGTCATTGACA  1027

Query  812  GCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTGTTTTGTATAATGTCTTTACTCCTCATGGACCT  885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028  GCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTGTTTTGTATAATGTCTTTACTCCTCATGGACCT  1101

Query  886  GATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAATGGATTTCTGAATTTCAATGTAGCCTTTGCTTT  959
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102  GATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAATGGATTTCTGAATTTCAATGTAGCCTTTGCTTT  1175

Query  960  GGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCTGCTGCAGAGATTTCATGTTCAGAATTTAGGCC  1033
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176  GGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCTGCTGCAGAGATTTCATGTTCAGAATTTAGGCC  1249

Query 1034  ACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTATAATTTTCTTCATCCAGCCTCACAAAGAGGAG  1107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250  ACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTATAATTTTCTTCATCCAGCCTCACAAAGAGGAG  1323

Query 1108  AGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGCGCTGTGGCTCTCTCTGCACTTCAGCACAGTTT  1181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324  AGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGCGCTGTGGCTCTCTCTGCACTTCAGCACAGTTT  1397

Query 1182  TCTGTACTTCCAGAAATGTTACCACTTTGTGTTTCAACGATATCGCCTGGAGCACTATACTGTGACATCGAATT  1255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398  TCTGTACTTCCAGAAATGTTACCACTTTGTGTTTCAACGATATCGCCTGGAGCACTATACTGTGACATCGAATT  1471

Query 1256  GGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCATTTTCTCGCTCTGTGGCACTGTTCAGAGGATAT  1329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472  GGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCATTTTCTCGCTCTGTGGCACTGTTCAGAGGATAT  1545

Query 1330  CACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCTACAGACCCAACCATCCACACTGTCCCAGAAGG  1403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546  CACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCTACAGACCCAACCATCCACACTGTCCCAGAAGG  1619

Query 1404  CAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATTTCCCAGCAGCTTCCTTCTTCCTGACAATTGGC  1477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620  CAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATTTCCCAGCAGCTTCCTTCTTCCTGACAATTGGC  1693

Query 1478  AGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAAAACCTTTTGCAGAAGGACCTCTGGCCACCCGG  1551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694  AGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAAAACCTTTTGCAGAAGGACCTCTGGCCACCCGG  1767

Query 1552  ATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCATCCAGATATATTGATATCAGTAAATGCCATTA  1625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768  ATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCATCCAGATATATTGATATCAGTAAATGCCATTA  1841

Query 1626  TTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCCAAAATATTCATCCAATAAAGAAGAATGGATCA  1699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842  TTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCCAAAATATTCATCCAATAAAGAAGAATGGATCA  1915

Query 1700  GCTTGGCCTATAGACCATTCCTTGATGCTTCTAGATCTTCAAAGCTGCTGCGGGCATTCTATGTCCCCTTCCTG  1773
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916  GCTTGGCCTATAGACCATTCCTTGATGCTTCTAGATCTTCAAAGCTGCTGCGGGCATTCTATGTCCCCTTCCTG  1989

Query 1774  TCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAACCCCGGAAAGCAAAGCAAATCAGGAAGAAAAG  1847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990  TCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAACCCCGGAAAGCAAAGCAAATCAGGAAGAAAAG  2063

Query 1848  TGGAGGT-------------------------------------------------------------------  1854
            |||||..                                                                   
Sbjct 2064  TGGAGACCGGAGAAGAGCAGAACCAACTTACAGGAAGAATTGAAAATCCTGGTACTGGATGGCTGTGATAAGCT  2137

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2138  GTTCTCCACACTCTGGCCTGGCATCTGAGAACTAGCAAGCCTCTCTTAGGCCATATGGGCTTCTCCACCAAAGC  2211

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2212  TGTTTGGCAGCTCCTAGCAGACCTTCTTATTGAAATCCTCATGCTGAAAATGAACACAGCCTAGTTGCCAACCC  2285

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2286  ACATGTCCTTTTCACCTCCAGCAAGACTAAGCTTCTTTAAAGCACTTCACAGGACTAGGACCCTGTCCTGGAGC  2359

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2360  TATCTCAGGAAAAAGGTGATCTAGCTAACAGGTAGCTAGAGTTGAACACCACTGCTCTGGATAAAGACTGAGAG  2433

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2434  ACTAACAATCACACCAAAAAATCAAAGGTAATTAAACAGGCAACATATTTGGTGTCCTTTTCTAATTGTGACTC  2507

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2508  CTGGTTACCCAGGCCTTCATCTAGGCCTCTTCCCCACCACAGACCTATTTCTCTGTCTACTCCAGCCCATCAAA  2581

Query 1855  ---------------------------------------------  1854
                                                         
Sbjct 2582  CCTTACCTGCCCTCTCTCCCATTCCCTCTGGGCCCTGCTTTCTGG  2626

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