Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04128
Subject:
XR_001747975.1
Aligned Length:
2814
Identities:
1802
Gaps:
990

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTGCCCCCGGGAGGGTCTTAGCTGTGGCGCGCGGGGCTCAGTCCGGCCTGGCCTCACCGCGGGAGGCCCGAGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCCTCTTCAGCTAGGTCCTATTGGTCTTCCTGGGCGGGTCAGCATTCAGTCTTCGCCCACCTTAGATCCCTCC  148

Query    1  --------------ATGGCTAGTCGAGGG------------GCTC----GGCAGCGCCTGAAGGGCAGCGGGGC  44
                          .||.||  |.|||.|            ||||    |.||| ||||  ||   ||.|||..
Sbjct  149  ACTGCGCTGTAAAACTGCCT--TGGAGTGCGGATCTGTGATGCTCCTGGGCCAG-GCCT--AG---AGTGGGCA  214

Query   45  CAG---CAGTGGG-GA----------------------------TACGGC------------------------  62
            |||   |.||||| ||                            ||||||                        
Sbjct  215  CAGCCTCTGTGGGAGATGTAGACAGGATCAAAGAGTATACCTTTTACGGCTGTTCCTCACAGCTCCTTTTATTC  288

Query   63  -CCC-------------------------------------------------------------GGCTGCGG-  73
             |||                                                             ||||||.| 
Sbjct  289  TCCCTCAAGTCCCGACCCTTTACTGGGCCCATCCAACCCGCCATCACCTCTTCCCAAACCCTGGAGGCTGCAGG  362

Query   74  --ACAAGCTGC-----GGGAGCTG-------CTGG-------GCAGCCGA-------------GAGGC------  107
              |.|| ||||     ||||||||       .|||       |.||.|.|             .||||      
Sbjct  363  TTAGAA-CTGCATTAAGGGAGCTGTCAACATATGGAATTGGAGTAGGCTATGTACCTTGCACCTAGGCTTCTAT  435

Query  108  ----------GGGCG----------GC--------GC----------------------------GGAG-----  120
                      |||.|          ||        ||                            ||||     
Sbjct  436  CTGAACATAAGGGGGAATGAATAAAGCCATCAAAAGCAATGACCTTGTTAAGAAAAGAAAGAAAAGGAGAATGA  509

Query  121  CACC-----GGAC--CGAGTTATCTGGGAACAAAGCAGGACAAGTCTGGGCACCTGAAGGATCTACTGCTTTCA  187
            ||.|     ||.|  |.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  510  CAGCTTTGTGGCCTTCAAGTTATCTGGGAACAAAGCAGGACAAGTCTGGGCACCTGAAGGATCTACTGCTTTCA  583

Query  188  AGTGTCTGCTTTCAGCAAGGTTATGTGCTGCTCTCCTGAGCAACATCTCTGACTGTGATGAAACATTCAACTAC  261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  584  AGTGTCTGCTTTCAGCAAGGTTATGTGCTGCTCTCCTGAGCAACATCTCTGACTGTGATGAAACATTCAACTAC  657

Query  262  TGGGAGCCAACACACTACCTCATCTATGGGGAAGGGTTTCAGACTTGGGAATATTCCCCAGCATATGCCATTCG  335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  658  TGGGAGCCAACACACTACCTCATCTATGGGGAAGGGTTTCAGACTTGGGAATATTCCCCAGCATATGCCATTCG  731

Query  336  CTCCTATGCTTACCTGTTGCTTCATGCCTGGCCAGCTGCATTTCATGCAAGAATTCTACAAACTAATAAGATTC  409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  732  CTCCTATGCTTACCTGTTGCTTCATGCCTGGCCAGCTGCATTTCATGCAAGAATTCTACAAACTAATAAGATTC  805

Query  410  TTGTGTTTTACTTTTTGCGATGTCTTCTGGCTTTTGTGAGCTGTATTTGTGAACTTTACTTTTACAAGGCTGTG  483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  806  TTGTGTTTTACTTTTTGCGATGTCTTCTGGCTTTTGTGAGCTGTATTTGTGAACTTTACTTTTACAAGGCTGTG  879

Query  484  TGCAAGAAGTTTGGGTTGCACGTGAGTCGAATGATGCTAGCCTTCTTGGTTCTCAGCACTGGCATGTTTTGCTC  557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  880  TGCAAGAAGTTTGGGTTGCACGTGAGTCGAATGATGCTAGCCTTCTTGGTTCTCAGCACTGGCATGTTTTGCTC  953

Query  558  ATCATCAGCATTCCTTCCTAGTAGCTTCTGTATGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACA  631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  954  ATCATCAGCATTCCTTCCTAGTAGCTTCTGTATGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACA  1027

Query  632  AGACTTCCATTGCTGTGCTGGGAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTA  705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028  AGACTTCCATTGCTGTGCTGGGAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTA  1101

Query  706  CCCATTGCCTTTGATTTGCTGGTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCAT  779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102  CCCATTGCCTTTGATTTGCTGGTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCAT  1175

Query  780  ACTATTTCTGGTGCCTGTGGTGGTCATTGACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTG  853
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176  ACTATTTCTGGTGCCTGTGGTGGTCATTGACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTG  1249

Query  854  TTTTGTATAATGTCTTTACTCCTCATGGACCTGATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAAT  927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250  TTTTGTATAATGTCTTTACTCCTCATGGACCTGATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAAT  1323

Query  928  GGATTTCTGAATTTCAATGTAGCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCT  1001
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324  GGATTTCTGAATTTCAATGTAGCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCT  1397

Query 1002  GCTGCAGAGATTTCATGTTCAGAATTTAGGCCACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTA  1075
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398  GCTGCAGAGATTTCATGTTCAGAATTTAGGCCACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTTTA  1471

Query 1076  TAATTTTCTTCATCCAGCCTCACAAAGAGGAGAGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGC  1149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472  TAATTTTCTTCATCCAGCCTCACAAAGAGGAGAGATTTCTTTTCCCTGTGTATCCACTTATATGTCTCTGTGGC  1545

Query 1150  GCTGTGGCTCTCTCTGCACTTCAGCACAGTTTTCTGTACTTCCAGAAATGTTACCACTTTGTGTTTCAACGATA  1223
            |||||||||||||||||||||                     ||||||||||||||||||||||||||||||||
Sbjct 1546  GCTGTGGCTCTCTCTGCACTT---------------------CAGAAATGTTACCACTTTGTGTTTCAACGATA  1598

Query 1224  TCGCCTGGAGCACTATACTGTGACATCGAATTGGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCAT  1297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599  TCGCCTGGAGCACTATACTGTGACATCGAATTGGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCAT  1672

Query 1298  TTTCTCGCTCTGTGGCACTGTTCAGAGGATATCACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCT  1371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673  TTTCTCGCTCTGTGGCACTGTTCAGAGGATATCACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCT  1746

Query 1372  ACAGACCCAACCATCCACACTGTCCCAGAAGGCAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATT  1445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747  ACAGACCCAACCATCCACACTGTCCCAGAAGGCAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGATT  1820

Query 1446  TCCCAGCAGCTTCCTTCTTCCTGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAA  1519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821  TCCCAGCAGCTTCCTTCTTCCTGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTTACCAA  1894

Query 1520  AACCTTTTGCAGAAGGACCTCTGGCCACCCGGATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCA  1593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895  AACCTTTTGCAGAAGGACCTCTGGCCACCCGGATTGTTCCTACTGACATGAATGACCAGAATCTAGAAGAGCCA  1968

Query 1594  TCCAGATATATTGATATCAGTAAATGCCATTATTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCC  1667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969  TCCAGATATATTGATATCAGTAAATGCCATTATTTAGTGGATTTGGACACCATGAGAGAAACACCCCGGGAGCC  2042

Query 1668  AAAATATTCATCCAATAAAGAAGAATGGATCAGCTTGGCCTATAGACCATTCCTTGATGCTTCTAGATCTTCAA  1741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043  AAAATATTCATCCAATAAAGAAGAATGGATCAGCTTGGCCTATAGACCATTCCTTGATGCTTCTAGATCTTCAA  2116

Query 1742  AGCTGCTGCGGGCATTCTATGTCCCCTTCCTGTCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAA  1815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117  AGCTGCTGCGGGCATTCTATGTCCCCTTCCTGTCAGATCAGTATACAGTGTACGTAAACTACACCATCCTCAAA  2190

Query 1816  CCCCGGAAAGCAAAGCAAATCAGGAAGAAAAGTGGAGGT-----------------------------------  1854
            |||||||||||||||||||||||||||||||||||||..                                   
Sbjct 2191  CCCCGGAAAGCAAAGCAAATCAGGAAGAAAAGTGGAGACCGGAGAAGAGCAGAACCAACTTACAGGAAGAATTG  2264

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2265  AAAATCCTGGTACTGGATGGCTGTGATAAGCTGTTCTCCACACTCTGGCCTGGCATCTGAGAACTAGCAAGCCT  2338

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2339  CTCTTAGGCCATATGGGCTTCTCCACCAAAGCTGTTTGGCAGCTCCTAGCAGACCTTCTTATTGAAATCCTCAT  2412

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2413  GCTGAAAATGAACACAGCCTAGTTGCCAACCCACATGTCCTTTTCACCTCCAGCAAGACTAAGCTTCTTTAAAG  2486

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2487  CACTTCACAGGACTAGGACCCTGTCCTGGAGCTATCTCAGGAAAAAGGTGATCTAGCTAACAGGTAGCTAGAGT  2560

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2561  TGAACACCACTGCTCTGGATAAAGACTGAGAGACTAACAATCACACCAAAAAATCAAAGGTAATTAAACAGGCA  2634

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2635  ACATATTTGGTGTCCTTTTCTAATTGTGACTCCTGGTTACCCAGGCCTTCATCTAGGCCTCTTCCCCACCACAG  2708

Query 1855  --------------------------------------------------------------------------  1854
                                                                                      
Sbjct 2709  ACCTATTTCTCTGTCTACTCCAGCCCATCAAACCTTACCTGCCCTCTCTCCCATTCCCTCTGGGCCCTGCTTTC  2782

Query 1855  --  1854
              
Sbjct 2783  TG  2784

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.